Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20parareesei_20[genbank_20GCA_5F001050175.1_202015-07- 08] 885 sequences; 32,070,663 total letters Query= NC_013668.3 Length=248526 Score E Sequences producing significant alignments: (Bits) Value seq804 230 4e-55 seq736 145 1e-29 >seq804 Length=175399 Score = 230 bits (254), Expect = 4e-55 Identities = 565/841 (67%), Gaps = 23/841 (3%) Strand=Plus/Plus Query 159649 CTTCTCGAAAAAGTTGGTCTTGCCCTCCATGGATATTGATTCCATGAACCCGAATGGGTT 159708 |||||| || |||||||||||||| ||| ||| || ||||| || | || ||||| Sbjct 34874 CTTCTCAAAGAAGTTGGTCTTGCCGCCCAGGGAAATGTTCTCCATAAAGTCAAAGGGGTT 34933 Query 159709 CTTC-ACGTGATAGCGCTTCGGAAATCCGAGAGCCGCCAGCAACCTGTCTGCCACAAATT 159767 | || || || |||| |||||||| |||||| | ||| || ||||| | Sbjct 34934 GGACGACTTG-TACACCTTCTCGTTGCCGAGAGCTACCAGCAGGCGGTCGGCGACAAACT 34992 Query 159768 CGATGTAGCTACA-CATCTGCTCACAGTTGATCCCCAGCAG--CCTAACGGGGAGCGCTT 159824 | ||||| || | ||| | | |||| || |||||||| | || || || |||| Sbjct 34993 CAATGTA-CTGCTTCATGAGGTTGGAGTTCATGCCCAGCAGGGCGCAA--GGCAGAGCTT 35049 Query 159825 CCGACAGAAACTCCTTCTCAATCTCGACCGCTTCGGTCACAATCTG-CGAGACACGTTCG 159883 | | || |||||||| ||| || ||| || ||||| | || | ||| ||| | | Sbjct 35050 CGGTCAAAAACTCCTGCTCGATGCGGACGGCGTCGGTGATGATGTCACGAATCACCTCCT 35109 Query 159884 TAC---CCCGGCTTGCCCAAAATGTGGTCCTTAAACAGGAGGCACGCAAAGTCGCAGTGC 159940 | | | ||| | | | ||| | ||| ||||| |||||||| |||| Sbjct 35110 TGCTGGCGCGGTTCTTC----AGGTGAGAGTG---CAGCAGGCAGGCAAAGTCCGTGTGC 35162 Query 159941 AGTCCCTCGTCCCGAGAGATGAACTCGTTGGACATGATGAGGCCCGGCATGATCCCACGC 160000 || |||||||| |||||||||| ||||||||| | | | ||||| ||||||| || ||| Sbjct 35163 AGACCCTCGTCACGAGAGATGAGCTCGTTGGAAAAGGTCAGGCCGGGCATGAGACCTCGC 35222 Query 160001 GGTTTGAGCCAAAAAATGGCCGCAAAAGCACCGCTAAAAAAGATCCCCTCCACGGCCGCA 160060 |||||||| ||||||| ||||| |||||||| || ||||| ||||| || || ||| Sbjct 35223 TTCTTGAGCCAGAAAATGGAGGCAAAGGCACCGCTGAAGAAGATACCCTCGACAGCGGCA 35282 Query 160061 AACGCCACGAGCCTCTCACCAAAAGAGGCGTTGGTGTCATGGGTCCACCTTTTGGCCCAT 160120 || || ||||| | || |||| || | ||| |||| ||| |||| | | ||||| Sbjct 35283 AAGGCAACGAGACGCTGGGCAAAGGACGAGTTCTTGTCCTGGATCCATCGAATCGCCCAG 35342 Query 160121 TCAGCCTTCTTTGCG-ATGCACGGCATGCGCTCGACGGCGTTAAACAATCTGTCCTGCTC 160179 ||||||||| ||||| ||||| || ||| ||| | |||||| || | || ||| Sbjct 35343 TCAGCCTTC-TTGCGAATGCAAGGAATGGTCTCAATGGCGTTGAAGAGGTAGTTGCGCTG 35401 Query 160180 CTTCACATCCTTGATCAGAGTAGCAATCAGCTTCGAGTACATTTCTGCGTGCACATTTTC 160239 | |||||||| ||| | || ||| |||||| | || | ||| | || || Sbjct 35402 GCTGTGCTCCTTGATATAAGTGTCGATGAGCAGGGAGTACGTCTCGGAGTGGATGTTCTC 35461 Query 160240 GATGGCCATCTGAAAGTTGTAGAAATATGTCGCCTCCAGATACTGCACCTCCTGTGTGAA 160299 || ||||| ||| ||| || | ||||| | ||| ||||| |||| Sbjct 35462 CATCATGATCTGGAAGCCGTAAAAGCAGCGAGCCTCGGGGATCTGGACCTCGCCGCTGAA 35521 Query 160300 CCTTTGACCCAGATTGGCATTAACCAACCCGTCGGCGGCCGCAAAGAAAGCCAACACGTG 160359 | | |||| || | || || | ||||| | ||| || ||||| |||| | ||| Sbjct 35522 GCGCTCGACCAGGTTCTCGTTGACAATGCCGTCCGAGGCGGCGAAGAAGGCCAGGATGTG 35581 Query 160360 AGAGATGAAATGTCTCTCGTCTTTGTTGAGTCTCTTTTCCCAGT-GTGTCACGTCTTGGG 160418 ||||||||| | ||||||| | ||| || | || | ||||| ||| || ||| | || Sbjct 35582 AGAGATGAAGTACTTCTCGTCATCGTTCAGGCGGTTGTTCCAGTCGTG-CAGGTCCTTGG 35640 Query 160419 CCAAATCAACCTCTTCCGCGCTCCAATTGGCAGCCTGAGCAGTTTTGTACATGGCCCAGA 160478 || |||| ||| || ||| |||| || ||||| || |||||||||| ||||| Sbjct 35641 ACAGGTCAATCTCCTCGGCGGTCCAGAAGGAAGCCTCGGCCTTTTTGTACATTTGCCAGA 35700 Query 160479 T 160479 | Sbjct 35701 T 35701 >seq736 Length=134049 Score = 145 bits (160), Expect = 1e-29 Identities = 386/576 (67%), Gaps = 14/576 (2%) Strand=Plus/Minus Query 203843 TCCACCGTGAACTGAAT-GGCGTTCA-CGGCAGGCCTGCTT-CTCAGATAGTACATGCCG 203899 || || |||||||| || |||| || | || |||||| | | || |||||||||||| Sbjct 48370 TCGACGGTGAACTGGATAGGCG--CAGCTGC-GGCCTGGGTACGGAGGTAGTACATGCCG 48314 Query 203900 GTCTTTAGGCCCTTCTGCCACCCGTACATGTGCATGGAAGACAGTTTGCTCACGTTGGGG 203959 ||||| || || || ||| ||| | ||||||| | | |||| || ||||| Sbjct 48313 GTCTTGAGACCGAGCTTCCAGCCGGTGAAGTGCATGCTGGTGATCTTGCCCATCGTGGGG 48254 Query 203960 TCGGCCATGTGAATGTTCAGAGACTGGCTTTGGTCGATGAAAGGCGCCCGATCTGCGGCC 204019 || |||||| ||||| || |||||| ||||||||||||| | ||||| || ||| Sbjct 48253 TCCTTCATGTGGATGTTTAGGGACTGGGACTGGTCGATGAAAGCACCACGATCAGCCGCC 48194 Query 204020 ATATTGATAATGGTCTTCTGCGAAATCTCCCACACCGTCTTGAACACGTCTCTGGTGTGT 204079 || | || || ||| || |||||||| || |||||| ||| | | || ||| Sbjct 48193 ATCTGGACGATTTGACGCTGAGATATCTCCCAGACGGTCTTGTACAGGGCCTTGATGTCC 48134 Query 204080 TGAGGCACATCTTCCCACGTCCTG-ATCGAGCCGTTGTCGGCCATCAGTCTCATCCTCGT 204138 | || | | | | || ||| || |||||||| ||||| || | | || || | Sbjct 48133 TCGGGGATGT-TGGGAATGTTCTGGATGGAGCCGTTCTCGGCAATGATGCGGTTCTTCAT 48075 Query 204139 CTCCTCCCCCCACATGCCCAACCTGATCAGCTCCCGCACCAGGTGGGGGTTGATGATCTG 204198 | || ||||| ||| || ||| ||| | || ||||||| | ||| Sbjct 48074 GGCGTCAGACCACAGGCCGGTGTCGACCAGGTCCTTGAGAAGCCAAGGGTTGACAACCTG 48015 Query 204199 AAAGTCTCCGGACAGCACCCCTCGGGTGAACAGGTTGTTGGTGAATGGTTCGAACGCCTC 204258 || || || | || || | ||| | | | |||| |||| | || ||||| || Sbjct 48014 GAACTCACCAGCAAGGACACGTCGCTGGTAGATGTTGGAGGTGTAGGGCTCGAAGCATTC 47955 Query 204259 GTTGTTGCCGAAAATCTGAGCGGTGCTGGCCGTGGGCATGGGAGCCAGGAGCAGGGAGTT 204318 ||||||||| | |||||||| ||| ||||| |||||||| ||||| | ||||| | ||| Sbjct 47954 GTTGTTGCCCAGAATCTGAGAGGTACTGGCAGTGGGCATAGGAGCGACGAGCAAGCTGTT 47895 Query 204319 GCGCACACCGTATTTTTGGACCCTGC-GCTTCAGAGAGGTCCAGTCGTGCA--TCGCACT 204375 ||| ||||||| | | || |||| ||| || ||| ||| || || ||| | Sbjct 47894 GCGGACACCGTGCTCCTTGA-TCTGCTCCTTGAGGGAGTCCCACTCCCACAGGTCGGA-- 47838 Query 204376 GGGTTTCACGCCCCACATGTCGAACTGAAAGATGCC 204411 ||| || ||| ||||||||||| |||| | ||| || Sbjct 47837 GGGCTTGACGTCCCACATGTCGTACTGGAGGATACC 47802 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 795146403595600