Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20parareesei_20[genbank_20GCA_5F001050175.1_202015-07- 08] 885 sequences; 32,070,663 total letters Query= NC_013772.1 Length=176677 Score E Sequences producing significant alignments: (Bits) Value seq373 138 1e-27 seq877 134 2e-26 seq764 125 8e-24 >seq373 Length=44988 Score = 138 bits (152), Expect = 1e-27 Identities = 158/210 (75%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 46385 ACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCG 46444 ||||| |||| || |||||||| ||||| ||||||||| | || || |||| || Sbjct 36809 ACCAGGTGCAGAGTGCTCTCCTTCTGGATGTTGTAGTCGCTCAAGGTACGACCGTCTTCC 36750 Query 46445 AGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATG 46504 |||||||| || || || ||||||||||||||||| | ||| | | |||||||||| Sbjct 36749 AGCTGCTTACCAGCAAAGATCAAGCGCTGCTGGTCAGGCGGGATACCCTCCTTGTCCTGA 36690 Query 46505 ATCTTCTTCTTGAGCGTCG-CCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTT 46563 |||||| ||||| ||| | | | || || |||||||| |||| || || || || Sbjct 36689 ATCTTCGACTTGA-CGTTGTCGATGGTATCAGATGATTCCACTTCCAGAGTAATCGTCTT 36631 Query 46564 GCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 |||||||| || ||||||||||| ||||| Sbjct 36630 ACCCGTCAGTGTCTTAACAAAGATCTGCAT 36601 Score = 116 bits (128), Expect = 4e-21 Identities = 151/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 46385 ACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCG 46444 ||||| || | ||| |||||| ||||| ||||||||||| || || || |||| || Sbjct 36067 ACCAGGTGGAGGGTAGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTTCGGCCGTCCTCA 36008 Query 46445 AGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATG 46504 ||||||||||| || || || | ||||||||||| | || | | |||||||||| | Sbjct 36007 AGCTGCTTGCCAGCAAAGATGAGACGCTGCTGGTCCGGAGGGATACCCTCCTTGTCCTGG 35948 Query 46505 ATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTG 46564 ||||| ||| | | | | |||||| ||| || || || | |||||||| ||| Sbjct 35947 ATCTTGGACTTCACATTGTCGATGGTGTCGGACGACTCGACCTCGAGGGTGATGGTCTTG 35888 Query 46565 CCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 || || || || || || ||||| ||||| Sbjct 35887 CCGGTGAGGGTCTTGACGAAGATCTGCAT 35859 Score = 111 bits (122), Expect = 2e-19 Identities = 152/210 (72%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 46385 ACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCG 46444 |||| |||| || |||||||| ||||| ||||||||| | |||||| |||| || Sbjct 36581 ACCAAGTGCAGGGTGCTCTCCTTCTGGATGTTGTAGTCGCTCAAAGTGCGGCCGTCTTCC 36522 Query 46445 AGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATG 46504 |||||||| || ||||| |||| |||||||||||| | || | | |||||||||| Sbjct 36521 AGCTGCTTACCAGCGAAAATCAGGCGCTGCTGGTCCGGAGGAATACCCTCCTTGTCCTGA 36462 Query 46505 ATCTTCTTCTTGAGCGTCG-CCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTT 46563 ||||| ||||| ||| | | | || || || || || |||| |||||||| || Sbjct 36461 ATCTTGGACTTGA-CGTTGTCAATAGTATCAGATGACTCGACCTCCAGGGTGATGGTCTT 36403 Query 46564 GCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 || || || || || || || || ||||| Sbjct 36402 TCCTGTGAGGGTCTTGACGAAAATCTGCAT 36373 Score = 102 bits (112), Expect = 9e-17 Identities = 143/198 (72%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 46385 ACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCG 46444 || || || | |||| |||||| ||||| ||||||||||| || || || |||| || Sbjct 36353 ACAAGGTGGAGTGTAGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTTCGGCCGTCCTCA 36294 Query 46445 AGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATG 46504 ||||||||||| || || || | ||||||||||| | || | | |||||||||| | Sbjct 36293 AGCTGCTTGCCAGCAAAGATGAGACGCTGCTGGTCCGGAGGGATACCCTCCTTGTCCTGG 36234 Query 46505 ATCTTCTTCTTGAGCGTCG-CCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTT 46563 ||||| ||||| ||| | | | ||||| || || || || | ||||| || || Sbjct 36233 ATCTTGGACTTGA-CGTTGTCGATGGTGTCAGAGGACTCAACCTCGAGAGTGATCGTCTT 36175 Query 46564 GCCCGTCAGCGTTTTAAC 46581 ||| ||||| || || || Sbjct 36174 GCCGGTCAGGGTCTTGAC 36157 >seq877 Length=50207 Score = 134 bits (148), Expect = 2e-26 Identities = 164/221 (74%), Gaps = 2/221 (1%) Strand=Plus/Minus Query 46379 CGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCG 46438 |||| ||||| || | || |||||||| ||||| ||||||||| || ||||| | Sbjct 31688 CGCAGGACCAGGTGGAGGGTGCTCTCCTTCTGGATGTTGTAGTCGCTCAGGGTGCGGCCA 31629 Query 46439 TCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTG 46498 || ||||||||||||||||| || |||| |||||||||||| | || | || ||||||| Sbjct 31628 TCCTCGAGCTGCTTGCCGGCAAAGATCAGGCGCTGCTGGTCCGGGGGGATGCCCTCCTTG 31569 Query 46499 TCCATGATCTTCTTCTTGAGCGTCG-CCACCGTGTCGCTCGATTCCACATCCACCGTGAT 46557 ||| ||||| ||||| ||| | | | |||||| || ||||| || | ||||| Sbjct 31568 TCCTGAATCTTGGACTTGA-CGTTGTCGATGGTGTCGGAAGACTCCACCTCAAGGGTGAT 31510 Query 46558 GGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCATTTTGC 46598 || || ||||| || || || || || || ||||| |||| Sbjct 31509 CGTCTTCCCCGTGAGGGTCTTGACGAAAATCTGCATCTTGC 31469 >seq764 Length=87966 Score = 125 bits (138), Expect = 8e-24 Identities = 137/182 (75%), Gaps = 0/182 (0%) Strand=Plus/Plus Query 46404 CCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATA 46463 |||| ||||| ||||||||||| || || || | || ||||||||||| || ||||| | Sbjct 48336 CCTTCTGGATGTTGTAGTCGGACAGGGTTCGGCCATCCTCGAGCTGCTTACCAGCGAAGA 48395 Query 46464 TCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCG 46523 |||| ||||||||||| | || | || |||||||||| |||||| ||||| | Sbjct 48396 TCAATCGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGT 48455 Query 46524 CCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAA 46583 | | ||||||| || || || || | |||||||| ||||||||||| || || || | Sbjct 48456 CGATCGTGTCGGAGGACTCGACCTCAAGGGTGATGGTCTTGCCCGTCAGGGTCTTCACGA 48515 Query 46584 AG 46585 || Sbjct 48516 AG 48517 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 565232147050200