Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20parareesei_20[genbank_20GCA_5F001050175.1_202015-07- 08] 885 sequences; 32,070,663 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq804 343 1e-89 seq373 127 2e-24 seq877 116 4e-21 seq764 102 8e-17 >seq804 Length=175399 Score = 343 bits (380), Expect = 1e-89 Identities = 579/826 (70%), Gaps = 19/826 (2%) Strand=Plus/Plus Query 132625 TTCTCaaaaaaaTTAGTTTTTCCCTCCAAGGAAATGAGCGTCATAAAATCCAAGGGGTTG 132684 |||||||| || || || || || ||| ||||||| | |||||| || ||||||||| Sbjct 34875 TTCTCAAAGAAGTTGGTCTTGCCGCCCAGGGAAATGTTCTCCATAAAGTCAAAGGGGTTG 34934 Query 132685 GCTGTGTTGTAGTGCTT---GGTGCCGATCAGGTCGACGAGCAGCCTGTCGGCCACGAAC 132741 | | ||||| ||| | |||||| || | || ||||| | |||||| || ||| Sbjct 34935 GACGACTTGTACACCTTCTCGTTGCCGAG-AGCT--ACCAGCAGGCGGTCGGCGACAAAC 34991 Query 132742 TCGATGTATTGCGACATGGTTTCGCAATTAAGTCCCAGCAGA-CGCACCGGCAGCGCTTC 132800 || ||||| ||| |||| | | | || | |||||||| |||| ||||| ||||| Sbjct 34992 TCAATGTACTGCTTCATGAGGTTGGAGTTCATGCCCAGCAGGGCGCAA-GGCAGAGCTTC 35050 Query 132801 GGTGAGAAAGCGTTGCTCGATGGCGACCGCGTCGGTGACGATTTCCCTAACGCGCGCCGC 132860 ||| | ||| ||||||||| ||| |||||||||| ||| || | || | || Sbjct 35051 GGTCAAAAACTCCTGCTCGATGCGGACGGCGTCGGTGATGATGTCACGAATCACCTCCTT 35110 Query 132861 GCTCGGCCGTTGCACCAAATGCTTGAACATCAAGCAAGCAAAGTCGCAATGCAAGCCCTC 132920 ||| | || | | || || | || || ||| |||||||| |||| ||||| Sbjct 35111 GCTGGCGCGGTTCTTCAGGTGAGAGTGCAGCAGGCAGGCAAAGTCCGTGTGCAGACCCTC 35170 Query 132921 GTCCCTGGAAATGAGTTCGTTGCTGAAAGTCAAGCCGGGCATGAGGCCGCGTTTTTTGAG 132980 ||| | || ||||| |||||| || |||| |||||||||||| || || || ||||| Sbjct 35171 GTCACGAGAGATGAGCTCGTTGGAAAAGGTCAGGCCGGGCATGAGACCTCGCTTCTTGAG 35230 Query 132981 CCAAAATATGGCGGCGAAACTGCCCGAAAAGAAGACGCCCTCGACGGCCGCGAAAGCCAC 133040 ||| || |||| ||| || || ||||||| |||||||| || || || || || Sbjct 35231 CCAGAAAATGGAGGCAAAGGCACCGCTGAAGAAGATACCCTCGACAGCGGCAAAGGCAAC 35290 Query 133041 CAGGCGCTCGCCGAACGTGGC-TTCTT-TGCTGGCGATCCAGCGCAGCGCCCATTCGGCC 133098 || |||| | | || | | ||||| | |||| ||||| || | |||||| || ||| Sbjct 35291 GAGACGCTGGGCAAAGGACGAGTTCTTGTCCTGG--ATCCATCGAATCGCCCAGTCAGCC 35348 Query 133099 TTTTCTTTGACGCACGGCATCGTTTCGATGGCGTTCAACAAACGGAGTTTCTCTTCCGAG 133158 || | | ||| || || || || |||||||| || | | |||| | || | Sbjct 35349 TTCTTGCGAATGCAAGGAATGGTCTCAATGGCGTTGAAGAG--GTAGTTGCGCTGGCTGT 35406 Query 133159 GAACGC--ACGTAGGTGTCGATGAGGGTCGAATACATTTCCGAGTGTACGTTCTCCATGG 133216 | | | || ||||||||||| || ||| | || ||||| | ||||||||| Sbjct 35407 GCTCCTTGATATAAGTGTCGATGAGCAGGGAGTACGTCTCGGAGTGGATGTTCTCCATCA 35466 Query 133217 CGATTTGAAAGCCGTAAAAGCACCGCGCCTCGACCACCTGCACTTCTTGAGCGAAACGCT 133276 ||| || |||||||||||||| || |||||| | ||| || || ||| |||| Sbjct 35467 TGATCTGGAAGCCGTAAAAGCAGCGAGCCTCGGGGATCTGGACCTCGCCGCTGAAGCGCT 35526 Query 133277 CGACCAGATTTTCGTTGACGATGCCGTCGCTGGCGGCGAAAAAGGCCAGCACGTGCTTGA 133336 ||||||| || |||||||| |||||||| ||||||||| |||||||| | ||| || Sbjct 35527 CGACCAGGTTCTCGTTGACAATGCCGTCCGAGGCGGCGAAGAAGGCCAGGATGTGAGAGA 35586 Query 133337 TGAAATGGCGCTCGTTGTCGTTCAAGCG---CTCCCAGTCGCGCGTGTCCTTGGACAGGT 133393 |||| | ||||| ||||||| ||| | ||||||| || |||||||||||||| Sbjct 35587 TGAAGTACTTCTCGTCATCGTTCAGGCGGTTGTTCCAGTCGTGCAGGTCCTTGGACAGGT 35646 Query 133394 CCACCTCCTCGACGGTCCAAAACGACGCCTCGGCTTTTTTGTACAT 133439 | | ||||||| ||||||| || || |||||||| ||||||||||| Sbjct 35647 CAATCTCCTCGGCGGTCCAGAAGGAAGCCTCGGCCTTTTTGTACAT 35692 >seq373 Length=44988 Score = 127 bits (140), Expect = 2e-24 Identities = 157/215 (73%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || || ||||| ||||| ||||||||| |||| |||||| | || Sbjct 35859 ATGCAGATCTTCGTCAAGACCCTCACCGGCAAGACCATCACCCTCGAGGTCGAGTCGTCC 35918 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 |||| | | | | | || || |||| ||||| ||||| || || | ||||| Sbjct 35919 GACACCATCGACAATGTGAAGTCCAAGATCCAGGACAAGGAGGGTATCCCTCCGGACCAG 35978 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 ||||| ||||| | || ||||| ||||| || |||| || |||||| |||||||||| Sbjct 35979 CAGCGTCTCATCTTTGCTGGCAAGCAGCTTGAGGACGGCCGAACCCTCTCCGACTACAAC 36038 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCG 38458 ||||| ||||| | || || || |||| || || Sbjct 36039 ATCCAGAAGGAGTCTACCCTCCACCTGGTTCTCCG 36073 Score = 118 bits (130), Expect = 1e-21 Identities = 160/218 (73%), Gaps = 4/218 (2%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || || ||||| || || ||||||||| | || |||||| | | Sbjct 36373 ATGCAGATTTTCGTCAAGACCCTCACAGGAAAGACCATCACCCTGGAGGTCGAGTCATCT 36432 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 || | | | |||| | || || || | ||||| ||||| ||||| | ||||| Sbjct 36433 GATACTATTGACAACG-TCAAGTCCAAGATTCAGGACAAGGAGGGTATTCCTCCGGACCA 36491 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||||| || |||| ||| || || |||||||| |||| ||||| | | ||||||||| Sbjct 36492 GCAGCGCCTGATTTTCGCTGGTAAGCAGCTGGAAGACGGCCGCACTTTGAGCGACTACAA 36551 Query 38423 CATCCAAAAGGA-AGCGACGCTGCATTTGGTGCTGCGT 38459 |||||| ||||| ||| || ||||| ||||| || ||| Sbjct 36552 CATCCAGAAGGAGAGC-ACCCTGCACTTGGTCCTCCGT 36588 Score = 100 bits (110), Expect = 3e-16 Identities = 133/182 (73%), Gaps = 2/182 (1%) Strand=Plus/Plus Query 38254 TCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGACAGCGTGC 38313 |||| || || || || ||||| || ||||| |||| || ||| || | |||| | | Sbjct 36155 TCGTCAAGACCCTGACCGGCAAGACGATCACTCTCGAGGTTGAGTCCTCTGACACCATCG 36214 Query 38314 A-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTC 38372 | |||| | || || |||| ||||| ||||| || || | ||||| ||||| ||| Sbjct 36215 ACAACG-TCAAGTCCAAGATCCAGGACAAGGAGGGTATCCCTCCGGACCAGCAGCGTCTC 36273 Query 38373 ATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAG 38432 || | || ||||| ||||| || |||| || |||||| ||||||||||||||| ||| Sbjct 36274 ATCTTTGCTGGCAAGCAGCTTGAGGACGGCCGAACCCTCTCCGACTACAACATCCAGAAG 36333 Query 38433 GA 38434 || Sbjct 36334 GA 36335 Score = 82.4 bits (90), Expect = 8e-11 Identities = 104/138 (75%), Gaps = 4/138 (3%) Strand=Plus/Plus Query 38337 GACAAAGAGGGAATTCCCGCC-GACCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGA 38395 ||||| ||||| || |||||| ||||| ||||| | || | || || || |||||||| Sbjct 36694 GACAAGGAGGGTAT-CCCGCCTGACCAGCAGCGCTTGATCTTTGCTGGTAAGCAGCTGGA 36752 Query 38396 CGACGAGCGCACCCTCAACGACTACAACATCCAAAAGGA-AGCGACGCTGCATTTGGTGC 38454 |||| || ||| | | ||||||||||||||| ||||| ||| || ||||| |||| | Sbjct 36753 AGACGGTCGTACCTTGAGCGACTACAACATCCAGAAGGAGAGC-ACTCTGCACCTGGTTC 36811 Query 38455 TGCGTTTGAGAGGCGGCC 38472 | ||| | | || |||| Sbjct 36812 TCCGTCTCCGTGGTGGCC 36829 >seq877 Length=50207 Score = 116 bits (128), Expect = 4e-21 Identities = 161/220 (73%), Gaps = 4/220 (2%) Strand=Plus/Plus Query 38241 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCC 38300 || ||||| || ||||| || || |||||||| || || |||||| | || || ||| | Sbjct 31471 AAGATGCAGATTTTCGTCAAGACCCTCACGGGGAAGACGATCACCCTTGAGGTGGAGTCT 31530 Query 38301 ACCGACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGA 38359 |||||| | | | |||| | || || || | ||||| ||||| || ||| | || Sbjct 31531 TCCGACACCATCGACAACG-TCAAGTCCAAGATTCAGGACAAGGAGGGCATCCCCCCGGA 31589 Query 38360 CCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTA 38419 ||| ||||| || || | || ||||| ||||| || || | |||||||| | |||||| Sbjct 31590 CCAGCAGCGCCTGATCTTTGCCGGCAAGCAGCTCGAGGATGGCCGCACCCTGAGCGACTA 31649 Query 38420 CAACATCCAAAAGGA-AGCGACGCTGCATTTGGTGCTGCG 38458 ||||||||| ||||| ||| || || || |||| ||||| Sbjct 31650 CAACATCCAGAAGGAGAGC-ACCCTCCACCTGGTCCTGCG 31688 >seq764 Length=87966 Score = 102 bits (112), Expect = 8e-17 Identities = 131/181 (72%), Gaps = 0/181 (0%) Strand=Plus/Minus Query 38253 TTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGACAGCGTG 38312 ||||| || || || |||||||| ||||||||| | || |||||| || |||||| | Sbjct 48516 TTCGTGAAGACCCTGACGGGCAAGACCATCACCCTTGAGGTCGAGTCCTCCGACACGATC 48457 Query 38313 CAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTC 38372 | | | || || |||| ||||| ||||| |||||| | ||||| ||||| | Sbjct 48456 GACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGCATTCCCCCGGACCAGCAGCGATTG 48397 Query 38373 ATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAG 38432 || | ||| || || ||||| || || | || ||||| ||||||||||||||| ||| Sbjct 48396 ATCTTCGCTGGTAAGCAGCTCGAGGATGGCCGAACCCTGTCCGACTACAACATCCAGAAG 48337 Query 38433 G 38433 | Sbjct 48336 G 48336 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500167266838400