Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20parareesei_20[genbank_20GCA_5F001050175.1_202015-07- 08] 885 sequences; 32,070,663 total letters Query= NC_014765.1 Length=198519 Score E Sequences producing significant alignments: (Bits) Value seq474 241 2e-58 seq744 127 3e-24 >seq474 Length=61714 Score = 241 bits (266), Expect = 2e-58 Identities = 468/689 (68%), Gaps = 8/689 (1%) Strand=Plus/Minus Query 7457 TCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCT 7516 ||||| || |||||||||||||| || || || || || | ||||| || |||||||| Sbjct 41928 TCGAAGTCCTCACCACCCAAGTGAGTGTCACCGGCAGTGGACTTGACCTCGAAGATACCC 41869 Query 7517 CCTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTACG 7576 | |||||| | | | || ||||| || ||||||||||| || || || ||||| ||| Sbjct 41868 TCCTCAATGGTCAGGAGGGACACATCGAAGGTACCACCACCGAGATCGAAGATGAGCACG 41809 Query 7577 TTCGTATCGTCGTCTTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCA 7636 || ||| | || ||||| || || ||||| ||||| || || || || || || Sbjct 41808 TTGCGCTCGCCCTCGACCTTCTTGTCAAGGCCGTAGGCGATGGCAGCGGCGGTGGGCTCG 41749 Query 7637 TTAATAATACGAAGACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCGT 7696 || || ||||| || ||| ||||| ||||| | || || || || || || || Sbjct 41748 TTGATGATACGCAGGACGTTGAGGCCGGCAATGAGACCGGCGTCCTTGGTAGCCTGACGC 41689 Query 7697 TGCGAATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCGAGA 7756 || ||||| |||||||| ||||| || | ||| |||| |||| | |||| || Sbjct 41688 TGGCTGTCGTTGAAGTAGGCGGGGACGGTGATGACGGCGTTGTTGACGGTGGTACCAAGG 41629 Query 7757 TACGATTCCGCGATATCTTTCATTTTGGTAAGAACCATCGATGAAATCTCTTCAGCCGCA 7816 || | || ||| | || ||| ||||| || ||||| || || ||||| || | | Sbjct 41628 TAGGCCTCGGCGGTCTCACGCATCTTGGTCAGGACCATGGAGGAGATCTCCTCGGGGGTG 41569 Query 7817 AACTGTTTCGTTTCACCGTTAAAATCAACTTCAATCATGGGTTTATCCGCAGCAC-CGGG 7875 || ||| | || || || || ||||| || || | ||| || | || | | Sbjct 41568 AAGGTCTTCTTCTCGCCCTTGAACTCAACCTCGATGACGGGCTT----GGAGTTCTTGTC 41513 Query 7876 GATAACCTTATACGACCAATCTTTCATATCGTCTTGGACCTGTTGGTCCGAAAACTTTCT 7935 ||| ||||| | | | | ||||| ||| | ||||||| |||| | ||||| | Sbjct 41512 GATGACCTTGAAGGGGAAGTGCTTCATGTCGGCCTGGACCTCAGGGTCGGCGAACTTGCG 41453 Query 7936 TCCGATAAGACGCTTTGCATCAAAAACTGTGTTTTTGGGGTTCATGGCTGTTTGGTTCTT 7995 || || | ||||| || || || || ||||| | |||||||||||| |||||||| Sbjct 41452 GCCAATCAACCGCTTGGCGTCGAAGACGGTGTTCTGGGGGTTCATGGCGACCTGGTTCTT 41393 Query 7996 CGCCGCGTCCCCGATAAGACGTTCATTATTTTCCGTAAACGCGACGTACGATGGGGTCGT 8055 || ||||| || || ||||| || | || || || || ||| |||| || ||||| Sbjct 41392 GGCGGCGTCACCAATCAGACGCTC---GGTGTCGGTGAAGGCAACGAACGAGGGCGTCGT 41336 Query 8056 TCGATTCCCTTGGTCGTTCGCAATAATTTCTACGCGGTCGTTTTGCCAGACGCCGACGCA 8115 ||| || || |||||||| || || || || ||||| | | ||| |||||||| Sbjct 41335 TCGGTTACCCTGGTCGTTGGCGATGATATCACATCGGTCCTCACGGAAGATACCGACGCA 41276 Query 8116 CGAATACGTTGTTCCTAAATCAATACCGA 8144 || || || || || | || ||||||| Sbjct 41275 TGAGTAGGTAGTACCCAGGTCGATACCGA 41247 >seq744 Length=46994 Score = 127 bits (140), Expect = 3e-24 Identities = 359/545 (66%), Gaps = 15/545 (3%) Strand=Plus/Minus Query 7244 AGTTCCTCAAAACGTGCACGGGTAATGGATGTATAGAAATCAACGCCGTCGTATAACGAA 7303 || ||||| ||||| |||||||| |||| | ||| || | || ||| | | || Sbjct 5195 AGCTCCTCGAAACGAGCACGGGTGATGGTCATGGTGAAGTCCTCACCCTCGAAAAGAGAG 5136 Query 7304 TCAATTTCAATGGTTGTTTGTGC--CGTCGAAGATAACGTTCGCTTTGCGCGCTCACACG 7361 || || |||||||| | || || || | ||| || ||||| || ||||| || | Sbjct 5135 TCGATCTCAATGGTGGCCTGGGCACCGCTGGAGAGG--GTACGCTTGGCACGCTCGCAAG 5078 Query 7362 CCGTTCGTAAACGACGAAGGGCACGCGGGT---TACCGGAAATATCTTTCTTATGTTTAC 7418 | || || | | || || ||||| |||| | | || || ||||| || | Sbjct 5077 CAGTGCGGAGTCTTCGCAGAGCACGGGGGTCGTTGCTGGGG---TCCTTCTTGGTCTTGC 5021 Query 7419 GTTTAAACTCTTCAGAGAAGTG-TCGAAGGAGTCTCGAATCGAAATCTTCACCACCCAAG 7477 | | ||||| | | |||| |||| | || | | ||||| || | ||||||||| Sbjct 5020 GAGTGAACTCCTTCTTGCAGTGGTCGA-GCAGGTTGGTGTCGAAGTCCTGGCCACCCAAG 4962 Query 7478 TGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCTCCTTCAATGTTTAACAACGAA 7537 || || || || ||||| || ||||| |||| ||| || | ||||| | | || Sbjct 4961 TGGGTGTCACCAGCGGTAGCCTTGACAGTGAAGACACCACCCTGGATGTTCAGGAGGGAG 4902 Query 7538 ACATCAAACGTACCACCACCCAGGTCAAAAATGAGTACGTTCGTATCGTCGTCTTTGTTC 7597 ||||| || |||||||||||||| || | || || ||||| || | ||| | || Sbjct 4901 ACATCGAAGGTACCACCACCCAGATCGTAGATCAGGACGTTGCGCTCCTTGTCAGTCTTG 4842 Query 7598 TTATCG---AGACCGTACGCGATAGCCGCCGCCGTTGGTTCATTAATAATACGAAGACAG 7654 | | |||||||| ||||| || || || || || || || || ||||| || | Sbjct 4841 CCAGCACCCAGACCGTAGGCGATGGCAGCAGCGGTAGGCTCGTTGATGATACGGAGGACG 4782 Query 7655 TTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCGTTGCGAATCGTTAAAGTAG 7714 || ||||||||||| | | ||||| || || || || || || ||||| |||||| Sbjct 4781 TTGAGGCCAGCAATGGCACCAGCATCCTTGGTAGCCTGACGCTGGTTGTCGTTGAAGTAG 4722 Query 7715 GCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCGAGATACGATTCCGCGATATCT 7774 || ||||| || | ||| || | | || ||||| || || | | || || || || Sbjct 4721 GCAGGGACGGTGATGACAGCCTTCTCAACCTTCTTGCCAAGCTTGGTCTCGGCAATCTCC 4662 Query 7775 TTCAT 7779 ||||| Sbjct 4661 TTCAT 4657 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 635125773843400