Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20parareesei_20[genbank_20GCA_5F001050175.1_202015-07- 08] 885 sequences; 32,070,663 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq736 224 1e-53 seq804 143 3e-29 seq710 100 4e-16 >seq736 Length=134049 Score = 224 bits (248), Expect = 1e-53 Identities = 925/1437 (64%), Gaps = 39/1437 (3%) Strand=Plus/Plus Query 111612 CCACAGTACATGTTCATGCGGGTCGCGATCGGTATCCATGGGGAAGATATTGATTCTGTT 111671 ||||| ||||| | ||||| || || | || ||| || || || ||||| ||| Sbjct 46608 CCACAACACATGATTATGCGAGTGGCCGTTGGCATCTGGGGAGACGACATTGAGCGTGTC 46667 Query 111672 TTGGAGACATACGACAAGATGTCCCGTGGTATGTTCATCCACGCAACACCAACCCTCTTC 111731 | ||||||||| || |||||| | | |||| |||||| | || ||||||||| Sbjct 46668 CTCGAGACATACCACCTCATGTCCAGCAAGTTCTTCACCCACGCCTCCCCTACCCTCTTC 46727 Query 111732 AACGCTGGTACACCAAGACCCCAAATGTCCAGTTGTTTCCTTATTGCAAACAAGGAGGAT 111791 || ||||| || || | |||| ||||| || ||||| | | | ||||| || Sbjct 46728 AATGCTGGCACCCCGCAAGCCCAGCTGTCCTCATGCTTCCTGGTGGACATGAAGGACGAC 46787 Query 111792 TCAATCAATGGCATTTACGGCACTCTCACTGAATGTGCCCAAATCTCAAAGTGGGCTGGT 111851 || | || || || | ||| || | |||||| || || ||| ||||||| Sbjct 46788 AGCATTGAGGGTATCTATGACACCCTGAAGACGTGTGCCATGATTTCCAAGATGGCTGGT 46847 Query 111852 GGTATCGGGATGCACATCCATGATGTCAGAGCCAACAAGTCTCGTAT-TAGA-GGTACAA 111909 || ||||| || || |||| || | |||| | ||| || | | || || | Sbjct 46848 GGCATCGGTCTGAACGTCCACCGCATCCGTGCCACT--GGCTCCTACATCGCCGGCACCA 46905 Query 111910 ATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTATG 111969 | || || | || ||||| || ||||| || || || ||| ||| || || || | Sbjct 46906 ACGGCACCTCCAACGGCATTATCCCCATGCTGCGAGTCTTCAACAACACTGCCCGATACG 46965 Query 111970 TAAACCAAGCTGG------GCGTCGCAAGGGATCTATCGCAGTCTATCTTGAGCCATGGC 112023 | |||| | ||| ||||| || | | || |||| || ||||| |||| Sbjct 46966 TCGACCAGGGTGGCAACAAGCGTCCT---GGTGCCTTTGCCATCTACCTCGAGCCCTGGC 47022 Query 112024 ACGCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGATGAGGAGGCGCGGT 112083 |||| || || | || |||||||| | || ||||| || | ||||||| || Sbjct 47023 ACGCCGACGTCTTTGACTTCCTTGATCTCCGCAAGAACCACGGCAAGGAGGAGGTTCGCG 47082 Query 112084 GCCGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGAGGAGA 112143 |||||| | ||| ||||| ||||| || ||||||||||||||| | || ||| ||| Sbjct 47083 CCCGCGACTTGTTCCTTGCTCTGTGGATCCCCGATCTCTTCATGAAGCGTGTCGAGAAGA 47142 Query 112144 G--TGGCAATTGGTCTCTCTTTTGTCCAGAC-AAGGCACCCGGTCTCTCCGATGCCGTGG 112200 ||| | ||| | ||| | || || || || || || ||||| | || | | Sbjct 47143 ACTTGG--ACTGGACGCTCATGTGCCCCAACGAATGC-CCTGGTCTTGCTGACTGCTACG 47199 Query 112201 GTGAGGAGTTTGAAGCCCTCTACACAAAGTACGAG---GAAGAAAGTCGGGCGACTGCGA 112257 | ||||||||||| || || ||| |||||||||| || | | || || || | || Sbjct 47200 GCGAGGAGTTTGAGGCTCTGTACGAAAAGTACGAGAGGGAGGGACGT-GGTCG--TAAGA 47256 Query 112258 CGGTGCCAGCTGCCGATG-TGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACTGGTACA 112316 | | | ||| | || | ||||| | | || || || | || ||||||||||||| Sbjct 47257 CCATCCGTGCT-CAGAAGCTGTGGTACTCCATCCTGGAGGCCCAGACCGAGACTGGTAAC 47315 Query 112317 CCATATATGCTTTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAGAATTTGGGTGTG 112376 || | ||||||||||| ||| ||| |||| ||||| || || ||||| ||||| Sbjct 47316 CCCTTCATGCTTTACAAGGACCACTGCAACCGCAAGAGCAACCAGAAGAACTTGGGCACC 47375 Query 112377 ATCAAGAGTTCCAACCTCTGTACAGAAATCTTGGAATTTACAGACAAAGATGAGACGGCT 112436 ||| || || |||||||| || || ||| | || | | | || ||| ||| Sbjct 47376 ATCCGCAGCTCTAACCTCTGCACTGAGATCATTGAGTACTGTGCCCCCGACGAGGTCGCT 47435 Query 112437 GTGTGTAACCTCGCATCAATCGCTCTCCCCAAGTATGTGGATCCAGAGACAAAGAC--AT 112494 || || ||| | || || | || || ||| | ||| || | | | || | | | | Sbjct 47436 GTCTGCAACTTGGCCTCTCTGGCCCTTCCCGCCTTTGTCGA-CTACA-ACGAGGGCTGCT 47493 Query 112495 TTGATTATGAAAAACTCCACGAAGTTACGAAAACTGTCACAAAAAACCTAAACAGAGTTA 112554 || | | || || |||||||| || || ||| ||||| ||| | | | Sbjct 47494 ACGACTTCAAGAAGCTTCACGAAGTCACCAAGGTGGTCGTCCGCAACCTCAACCGCATCA 47553 Query 112555 TTGATAGAAATTTTTACCCCGTTGAGACTGCTCGTAAATCTAATATGAGACACCGTCCAA 112614 | ||| || |||||||| ||| ||||| || || ||| | ||||| || | Sbjct 47554 TCGATGTGAACCACTACCCCGTCGAGGAGGCTCGCAACAGCAACATGCGCCACCGACCTA 47613 Query 112615 TTGGTCTCGGTGTCCAAGGTCTCGCGGATGTATTCAT-TCTTTGTCGCCACGCATTTGAT 112673 | ||| |||||||||| ||||| || || | ||| | || || || | | ||||| Sbjct 47614 TCGGTGTCGGTGTCCAGGGTCTTGCTGACGCGTTCCTCGCTCTG-CGTCTGCCCTTTGAG 47672 Query 112674 TCCGACGAAGCGAAGGAAATCAATGCGCGTATATTTGAGACAATGTATCACGCCGCTCTT 112733 || ||| || || | || || || || ||||| || || || ||||| ||| Sbjct 47673 TCTCCCGAGGCTCGCGAGCTGAACAAGCAGATCTTCGAGACCATTTACCATGCCGCCCTT 47732 Query 112734 GAGGCGAGTTC---GGAGTTGGCAGAGGTTGATGGTCCATATGAAACCTTTGAGGGTTCT 112790 || || ||| |||| | || |||| || || || |||||| | || |||| || Sbjct 47733 GAAGC---TTCCATGGAGATTGCCAAGGTCGAGGGCCCCTATGAATCGTTCAAGGGATCG 47789 Query 112791 CCAGCTTCACAAGGGGTGCTTCAATTTGATATGTGGGAAGGTGAGACCAAGCTTCACTAC 112850 || || || | || | || || | || |||||||| | || || | | Sbjct 47790 CCTGCATCTGAGGGTATCCTCCAGTACGACATGTGGGACGTCAAGCCCTCCGACCTGTGG 47849 Query 112851 GACTGGGACGCTCTCAAGGAACGCATCAAGGAGAAGGGTCTTCGTAACAGTCTTTTGATG 112910 || |||||| | |||||||| | ||||||||| | ||| | || ||||| | | | Sbjct 47850 GAGTGGGACTCCCTCAAGGAGCAGATCAAGGAGCACGGTGTCCGCAACAGCTTGCTCGTC 47909 Query 112911 GCACCAATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAATGAATGCTTTGAACCC 112970 || || ||||| || ||| ||| | || || |||| || || |||||||| || ||| Sbjct 47910 GCTCCTATGCCCACTGCCAGTACCTCTCAGATTCTGGGCAACAACGAATGCTTCGAGCCC 47969 Query 112971 TACACGACGAACATCTATCTGAGAAGAACCCTCGCGGGAGAGTTTGTGATTGTCAAC 113027 ||||| | |||||||| | | || | ||| || || ||||| | |||||||| Sbjct 47970 TACACCTCCAACATCTACCAGCGACGTGTCCTTGCTGGTGAGTTCCAGGTTGTCAAC 48026 >seq804 Length=175399 Score = 143 bits (158), Expect = 3e-29 Identities = 179/243 (74%), Gaps = 2/243 (1%) Strand=Plus/Minus Query 102090 CTCTTTGAAGCCATCCAAACAGTTCCATGTATTCAAAAGAAAGCGGATTGGGCTATGAAG 102149 ||||| | ||||| | || |||| || |||| ||||| || || ||||| || Sbjct 35389 CTCTTCAACGCCATTGAGACCATTCCTTGCATTCGCAAGAAGGCTGACTGGGCGATTCGA 35330 Query 102150 TGGTTTGAT-ACAAAGTCGCGTTCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGA 102208 ||| | | |||| | ||| ||||||| |||| ||| | || ||||| ||| || Sbjct 35329 TGGATCCAGGACAAGAACTCGT-CCTTTGCCCAGCGTCTCGTTGCCTTTGCCGCTGTCGA 35271 Query 102209 GGGTATCTTCTTCTCTGGTTCCTTCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCAT 102268 ||||||||||||| ||| |||| | | |||| ||||||||||||||||||||||| Sbjct 35270 GGGTATCTTCTTCAGCGGTGCCTTTGCCTCCATTTTCTGGCTCAAGAAGCGAGGTCTCAT 35211 Query 102269 GCCAGGTCTCTGCTTCTCCAACGAGCTTATCTCTCGTGACGAGGGACTCCACCAAGAGTT 102328 ||| || || ||| ||||||||||| ||||||||||||||||| || ||| || || Sbjct 35210 GCCCGGCCTGACCTTTTCCAACGAGCTCATCTCTCGTGACGAGGGTCTGCACACGGACTT 35151 Query 102329 TGC 102331 ||| Sbjct 35150 TGC 35148 >seq710 Length=40501 Score = 100 bits (110), Expect = 4e-16 Identities = 190/274 (69%), Gaps = 8/274 (3%) Strand=Plus/Plus Query 16064 GGCATCAATCTCATCAATGAAGACGATGCATGGTTGATTTTCGCGAGCGACTTCAAAGAG 16123 ||| || || || |||||||||| |||||| || ||| | || | | | || | Sbjct 23836 GGCGTCGATTTCGTCAATGAAGATGATGCAGGGCGCATTCTTTCGGCCTTCCGCGAACAA 23895 Query 16124 ATCCCGTACACGCTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGCGGCG-GAAC 16182 || || ||||| | |||||| |||||||||||||||||||| | | || || Sbjct 23896 GTCTCGCACACGAGAAGGGCCCACGCCAACAAACATCTCCACAAACTCAGAACCGCTCAC 23955 Query 16183 ATTGGATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTACCCG 16242 | || |||||| || ||| || || ||| |||| ||||||||| ||||| || | Sbjct 23956 GCT-GAAGAAGGGCACGCCAGACTCTCCGGCAGTGGCCTTGGCGAGAAGCGTCTTTCCTG 24014 Query 16243 TACCTGGCTTACCCGCGAGGAGGGCACCTCGTGGAATCTTGGCGCC--ACTTC-CAAAGT 16299 | ||||| || ||||| | |||||| || || |||||||| || |||| |||| | Sbjct 24015 TTCCTGGAGGGCCGGCGAGAATGGCACCGCGAGGGATCTTGGCACCCAGCTTCTCAAACT 24074 Query 16300 ATCTCTCAGGTTGCTTAAGAAAATCCACAATCTC 16333 |||| |||||||| || ||| |||| ||| Sbjct 24075 ---TCTCGGGTTGCTTCAGGAAACTAACAAACTC 24105 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 620735533037200