Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20parareesei_20[genbank_20GCA_5F001050175.1_202015-07- 08] 885 sequences; 32,070,663 total letters Query= NC_017940.1 Length=127732 Score E Sequences producing significant alignments: (Bits) Value seq371 120 2e-22 seq510 82.4 6e-11 >seq371 Length=49181 Score = 120 bits (132), Expect = 2e-22 Identities = 151/205 (74%), Gaps = 2/205 (1%) Strand=Plus/Plus Query 29766 GGGAAAGGGTCTGGGCTCCCTCTCGAGCTGAGTCTTCAGCGGTTCCACGTGATCCAGGTA 29825 ||| || || | ||||| | ||||||||| |||| ||| | || | ||| || | ||| Sbjct 9280 GGGGAACGGCCGCGGCTCGCGCTCGAGCTGTGTCTGCAGGGCCTCGATGTGGTCGATGTA 9339 Query 29826 GACGTGAGCGTCTCCCAGGGTGTGGACAAA-CTCTCCCGGTTCTAGCCCGGTGACGTGAG 29884 |||||| |||||||||| | |||| | ||| ||||| | || || ||||| | Sbjct 9340 GACGTGCGCGTCTCCCATGACGTGGGTGAGGCTC-CCCGGCACCAGATCGCACACGTGGG 9398 Query 29885 CCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGTACCCCGAGCCCCATGT 29944 | | ||||| |||||| || | |||||| || ||||| ||||| | ||||||||||||| Sbjct 9399 CGAGCATGTGCGTGAGCAGCGCGTAGCTCGCAATGTTGAAGGGGATGCCGAGCCCCATGT 9458 Query 29945 CCCCCGACCTCTGGTAGAGCTGACA 29969 | | |||| |||||| ||||| || Sbjct 9459 CGCAGGACCGCTGGTACAGCTGGCA 9483 Score = 100 bits (110), Expect = 2e-16 Identities = 190/274 (69%), Gaps = 8/274 (3%) Strand=Plus/Plus Query 30114 CAGCTGATCCACCCCCATCCCCGAGTAGTCTGCCCTCATGTCCGTGTACTCTGCTCCGAA 30173 |||||| || || ||| | || | |||||| | | ||| |||||| || || || Sbjct 9685 CAGCTGGTCGACGCCCTTGCCGGCGTAGTCGGTGTTGGCGTCGACGTACTCGGCGCCAAA 9744 Query 30174 ATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCTGTGCTCGAAGCC 30233 |||| ||||||||| ||||| || || |||||||| || | || | |||| | | ||| Sbjct 9745 GTGCCGCCACTGGAAGCCGTAGACGGGGCCCAGGTCGCCGACGTCGCGGTGCGCCAGGCC 9804 Query 30234 CCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTTTACCCC--CTTCTCG 30291 |||| | || || | ||| |||||| ||||||||||||| || || | || | Sbjct 9805 GACGCTGTCGAGGAACTCGCGGGAGCCGTTGCCGTCCCAGATCTTGACGCCGACGTCGCT 9864 Query 30292 GAGAGCTCTTTG--GAGTTTGTGGACCCTCTGACGAACCACAGCAGCTCCTCCACGACGG 30349 ||| || ||| | ||| | || ||||| || |||||| || ||||| | | ||||| Sbjct 9865 GAGGGC-CTTGGATGAGGTGTTG--CCCTC-GATGAACCAGAGGAGCTCGGCGATGACGG 9920 Query 30350 CCTTCCAAAAGACCCTCTTGGTCGTGAGGAGGGG 30383 | ||||| | ||| || ||||||||||| Sbjct 9921 CGCGGAGGAAGACGCGCTTCGTGGTGAGGAGGGG 9954 >seq510 Length=17648 Score = 82.4 bits (90), Expect = 6e-11 Identities = 108/145 (74%), Gaps = 6/145 (4%) Strand=Plus/Minus Query 52051 AGATGGGCGACAAGTTTGCGTCGT-TCACGGCGCAAAAGGGGACGTGCGGAGCCGTCCTG 52109 |||| || |||||||||||||| |||||| |||||||| || || | | || Sbjct 13825 AGATTGGTGACAAGTTTGCGTCTCGTCACGGA-CAAAAGGGCACTATTGGTGTCA--CTT 13769 Query 52110 ACC--CAGGAGGACATGCCCTTCGACAAGGACGGGGTGGTGCCCGACCTCATCATCAACC 52167 ||| |||||||||||||| ||| || || || | ||||||| |||||||||||| Sbjct 13768 ACCGGCAGGAGGACATGCCGTTCACCAGAGAGGGAATTACGCCCGACATCATCATCAACC 13709 Query 52168 CCCACGCCTTTCCATCCAGGATGAC 52192 |||||||| |||| || | ||||| Sbjct 13708 CCCACGCCATTCCGTCTCGTATGAC 13684 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 408613192676105