Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20parareesei_20[genbank_20GCA_5F001050175.1_202015-07- 08] 885 sequences; 32,070,663 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq736 264 2e-65 seq804 224 2e-53 >seq736 Length=134049 Score = 264 bits (292), Expect = 2e-65 Identities = 952/1453 (66%), Gaps = 67/1453 (5%) Strand=Plus/Minus Query 221420 AGGGCAGCGTGGTAGATGGTCTCAAAGATCATCTTGTTGAGTCTCTTG-GCCTCGGGAGA 221478 ||||| || ||||| |||||||| |||||| |||||| || ||| | ||||||||||| Sbjct 47731 AGGGCGGCATGGTAAATGGTCTCGAAGATCTGCTTGTTCAG-CTCGCGAGCCTCGGGAGA 47673 Query 221479 AGTGAAGGGCATACGCAGCATCTGAAAGACGTCGGCCAGTCCCTGTACTCCGATACCGAT 221538 ||||||| |||||| | || |||| || || ||||| || |||| |||||| Sbjct 47672 CTCAAAGGGCAGACGCAGAGCGAGGAACGCGTCAGCAAGACCCTGGACACCGACACCGAT 47613 Query 221539 GGGCCTGTGTCTCCTGTTG--GAAGCGGCCGCTTCTGGCACGGGATAAAAGTTGACGTCG 221596 || | ||| | | ||||| | ||| | || || | ||||| || ||| || ||| Sbjct 47612 AGGTCGGTGGCGCATGTTGCTGTTGCGAGC-CTCCTCG-ACGGGGTAGTGGTTCACATCG 47555 Query 221597 ATCAGATTGTTGAGGTTCAGAGTGATGACTTTAACCACCTCGGTCAGCTTCTGGTGATTG 221656 || | ||||||||| | || || || || ||| ||||||| || Sbjct 47554 ATGATGCGGTTGAGGTTGCGGACGACCACCTTGGTGACTTCGTGAAGCTTCT------TG 47501 Query 221657 AACACCAACTCGCCGCCGTCGTGGAGGGGTTCCACAAAAGCGTTTAGGGCAACGCTGGCC 221716 || | | || ||| |||| | | || ||||| ||| ||||| | |||| Sbjct 47500 AAGTCGTA---GCAGCCCTCGTTGTAG---TCGACAAAGGCGGGAAGGGCCAGAGAGGCC 47447 Query 221717 AGGTTACACACGGCCACCTCGTCCTTGTTGGTA---TACTGTATGATCTCTGTACAGAGG 221773 | ||| || || || |||||||| | || | |||| |||||||| || |||||| Sbjct 47446 AAGTTGCAGACAGCGACCTCGTC---GGGGGCACAGTACTCAATGATCTCAGTGCAGAGG 47390 Query 221774 TT---GCTGCACTTGATGGTCCCCAGGTGATTGTGATTAGACTTGCGATTGGCAGCG-TC 221829 || ||||| |||||| |||| || || || || |||||| ||| ||| | || Sbjct 47389 TTAGAGCTGCG---GATGGTGCCCAAGTTCTTCTGGTTGCTCTTGCGGTTG-CAGTGGTC 47334 Query 221830 CTTGTAGAGCATAAAGGGACCGCCAGTCTCCAGCTGAGCCACCAGAATCTTGTCCCAGAG 221889 |||||| ||||| ||||| |||||||| ||| ||| |||| || || ||| || Sbjct 47333 CTTGTAAAGCATGAAGGGGTTACCAGTCTCGGTCTGGGCCTCCAGGATGGAGTACCACAG 47274 Query 221890 TTCTCTG-GCGCTCACCGTCCTCTTGACTGCA-CCCTCGGTCTTTTCATACCCGGTATAG 221947 | |||| || | | ||| | ||| | ||||| ||| | | || || || Sbjct 47273 CT-TCTGAGCACGGATGGTCTTAC-GACCACGTCCCTCCCTCTCGTACTTTTCG-TACAG 47217 Query 221948 AGCATGTCAAACTTTTCACCGTACGCCTCGTCCAGGCCTGGACACCTGGCGGGACACATC 222007 ||| | |||||| || ||||| || | || || || || | ||| ||||| Sbjct 47216 AGCCT--CAAACTCCTCGCCGTAGCAGTCAGCAAGACCAGGGCATTCGTTGGGGCACATG 47159 Query 222008 AGACTCCAGTGCTTGTTGTCTTTGACCCTCTGCATGAAGAGGTCCGGGATCCACAGCGCC 222067 || |||||| | ||| | | ||| | || ||||||||| || ||||||||||| || Sbjct 47158 AGCGTCCAGTCCAAGTTCTTCTCGACACGCTTCATGAAGAGATCGGGGATCCACAGAGCA 47099 Query 222068 TGAAAGAGATCTCTGGTCCGCTGCTCCTCCACGCCGTTGTTTTTCCTCAGATCCAAAAAC 222127 | || | || | || || ||||||| ||||| ||| || | ||||| | || Sbjct 47098 AGGAACAAGTCGCGGGCGCGAACCTCCTCCTTGCCGTGGTTCTTGCGGAGATCAAGGAAG 47039 Query 222128 TCAAAAATGTCAGCGTGCCACGGCTCCAGATAGACGGCCAGAGCGCCGGGTCGCTTGTTG 222187 ||||| | ||| |||||||| ||||| || |||| ||| | || || || ||||||||| Sbjct 47038 TCAAAGACGTCGGCGTGCCAGGGCTCGAGGTAGATGGCAAAGGCACCAGGACGCTTGTTG 46979 Query 222188 CCACCCTGATCCAC-CATCCTCTCCAGAG-CGTTGAAGATGCGAAGGGTCGGTACCAGTC 222245 |||||||| || || ||| ||| | |||||||| || || | || | | | Sbjct 46978 CCACCCTGGTCGACGTATC--GGGCAGTGTTGTTGAAGACTCGCAGCATGGGGATAATGC 46921 Query 222246 CGTTGGATCGACCGTTGGTGCCCTTAATGTACGCACCGCCGGCCCTCAGGTTAC--TGG- 222302 ||||||| ||||||||||| ||||| | || ||| | || | | ||| Sbjct 46920 CGTTGGAGGTGCCGTTGGTGCCGGCGATGTAGGAGCCAGTGGCAC---GGATGCGGTGGA 46864 Query 222303 CAGACATGCCGATACCACCGGCGTGTTTCGAGATCATGGCGCAGCTCTTGAGAGTGTCCA 222362 | || ||||| ||||| || || || |||||||| || |||| || ||||| Sbjct 46863 CGTTCAGACCGATGCCACCAGCCATCTTGGAAATCATGGCACACGTCTTCAGGGTGTCAT 46804 Query 222363 TGATGCCCTCCATAGAGTCCTCCTTGACGTTCAGCAGAAAACAAGACGACATCTGAGATT 222422 ||| ||||| || ||| ||||| | || || ||| || || || |||| ||| | || Sbjct 46803 AGATACCCTCAATGCTGTCGTCCTTCATGTCCACCAGGAAGCATGAGGACAGCTGGGCTT 46744 Query 222423 TGGTGGAACAGGCGTTAAACAGCGTGGGACTGGCGTGTGTAAAGTAGCCCCTAGACATCA 222482 | || | || || || || || || |||||| || ||| | || ||||| | Sbjct 46743 GCGGGGTGCCAGCATTGAAGAGGGTAGGGGAGGCGTGGGTGAAGAACTTGCTGGACATGA 46684 Query 222483 GATCGTACGTCTCTACGACTCTGGCGATGTTGTC-CCCGTGAATCTGC--ATGGCGCATC 222539 | | ||| ||||| | ||| | | |||| ||| ||| || ||| | ||| || Sbjct 46683 GGTGGTATGTCTCGAGGACACGCTCAATGTCGTCTCCCCAGA---TGCCAACGGCCACTC 46627 Query 222540 TCATGTACATGTACTGGGGCCTCTCCACA--GGACCCTTGGAGCTGGAGAGCAGGTACGA 222597 ||| ||||| || |||| ||| ||| || | ||||| ||| ||||| || Sbjct 46626 GCATAATCATGTGTTGTGGCCGCTCGACAATCTTGCCGTCGAGCTTCAGA--AGGTATGA 46569 Query 222598 TTTTTCCAGAGTCTTGAACCCAAAGTAGTTGAGGTCAAAGTCTCTGCCGTGAACCACGGC 222657 | ||||| |||||||| |||||||| | | || ||||||| | ||| || | ||| Sbjct 46568 TCGCTCCAGCGTCTTGAAGCCAAAGTATTGGTAGTTGAAGTCTCGGTCGTAGACGATGGC 46509 Query 222658 GGCGTCCAGCTCCGACTTGT---GCTTTACGCTCAACTCGAAAAAGCGCTCAGACACGAG 222714 || ||| |||||| ||||| || | || | | || | | || || | | Sbjct 46508 GGAGTCGAGCTCCTCCTTGTGGCGCATGACAC---ATTCATACGTGTCCTTGGAGATCAT 46452 Query 222715 GGGAGCGTTCTCTTTGGTGTCGGGGTTAACGTTGTGGTACAGCTGCCACATGGCATCAGA 222774 ||| | | | ||| | | |||||| || | |||||| || | | | | || | || Sbjct 46451 GGGCGAGGCCCTGTTGTTCTTGGGGTTGACATAGTGGTAGAGGTCGCTGACGACAGCTGA 46392 Query 222775 GAAC-GTGTCGGGAGTCTGCTTGTGCAGATTCGACACGGCGATCCGAGACGCCAAGATAC 222833 || | || | ||||||||||| || || || |||||||| || | |||| ||| Sbjct 46391 CCACTGCTTCTTG-GTCTGCTTGTGGAGGTTGGAGACGGCGATGCGGGCGGCCAGGATGG 46333 Query 222834 CATAGTCAGGGTG 222846 ||||||| ||||| Sbjct 46332 CATAGTCGGGGTG 46320 Score = 91.5 bits (100), Expect = 3e-13 Identities = 101/135 (75%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 221116 GTTCACCACTTGGAAATCTCCCGAGAGCACCCTCCTCTGGTACAGGTTAGAAGTGAACGG 221175 ||| || || ||||| || || | || || | | |||||| | ||| || ||| | || Sbjct 48026 GTTGACAACCTGGAACTCACCAGCAAGGACACGTCGCTGGTAGATGTTGGAGGTGTAGGG 47967 Query 221176 TTCGATGCTCTCGTTGTTGCCCAGGATCTGAGCCGTGCTGGCGGTGGGCATGGGTGCCAC 221235 |||| || |||||||||||||| ||||||| || ||||| |||||||| || || || Sbjct 47966 CTCGAAGCATTCGTTGTTGCCCAGAATCTGAGAGGTACTGGCAGTGGGCATAGGAGCGAC 47907 Query 221236 CAGCAGACTGTTGCG 221250 |||| |||||||| Sbjct 47906 GAGCAAGCTGTTGCG 47892 >seq804 Length=175399 Score = 224 bits (248), Expect = 2e-53 Identities = 560/854 (66%), Gaps = 18/854 (2%) Strand=Plus/Minus Query 25477 ATATGGGAGATGTACAAGAAGGCTCAAAACTCAAACTGGACCGCCGAAGAGATTGATCTG 25536 || ||| | |||||||| ||||| | || |||||||||||| |||||||| ||| Sbjct 35701 ATCTGGCAAATGTACAAAAAGGCCGAGGCTTCCTTCTGGACCGCCGAGGAGATTGACCTG 35642 Query 25537 GCCAAGGACATGGACGGCTGGTAC----GCTCTATCCAAAGACGAGCAGCATTTTCTCAA 25592 |||||||| || ||| |||| || || || | | |||||| || | || || Sbjct 35641 TCCAAGGACCTGCACGACTGGAACAACCGC-CTGAACGATGACGAGAAGTACTTCATCTC 35583 Query 25593 GTACGTGTTGGCATTCTTTGCAGCCTCTGATGGTATAGTGAACGAGAATCTGTGCGAGAG 25652 || | |||| ||||| || ||||| || || || || |||||||| ||| |||| | Sbjct 35582 TCACATCCTGGCCTTCTTCGCCGCCTCGGACGGCATTGTCAACGAGAACCTGGTCGAGCG 35523 Query 25653 ATTCACCAGGGAAGTGCAGTACGTGGAGGCCAAGTGTTTCTACGGTTTCCAGATGGCCAT 25712 |||| | | || || ||| | ||||| || || ||||| |||||||| || Sbjct 35522 CTTCAGCGGCGAGGTCCAGATCCCCGAGGCTCGCTGCTTTTACGGCTTCCAGATCATGAT 35463 Query 25713 CGAAAATGTGCACTCTGAGGTGTATGCCAAGCTTCTGATGACGTACATTACAGACGTCGC 25772 || || | ||||| ||| ||| || ||| | || || || | || | Sbjct 35462 GGAGAACATCCACTCCGAGACGTACTCCCTGCTCATCGACACTTATATCAAGGAGCACAG 35403 Query 25773 CGAGAGAGATCGGCTGTTTGGTGCCATCGAGCACATACCCAGCATCAAGAGGAAGGCGCG 25832 | || | | || || ||||| ||| ||| || |||| | |||||| Sbjct 35402 CCAGCGCAACTACCTCTTCAACGCCATTGAGACCATTCCTTGCATTCGCAAGAAGGCTGA 35343 Query 25833 GTGGGCCATGAAGTGGATCAACAGCCAGAGCGCTACGTTTGGCGAGCGGCTGGTAGCCTT 25892 ||||| || |||||| | | ||| | | | |||| | |||| || || ||||| Sbjct 35342 CTGGGCGATTCGATGGATCCAGGACAAGAACTCGTCCTTTGCCCAGCGTCTCGTTGCCTT 35283 Query 25893 TGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTTGCGGCCATCTTCTGGCTCAAGCA 25952 ||| ||||| ||||| ||||| ||||||||| | ||||| |||| |||||||||||| | Sbjct 35282 TGCCGCTGTCGAGGGTATCTTCTTCAGCGGTGCCTTTGCCTCCATTTTCTGGCTCAAGAA 35223 Query 25953 GAAGGGGACCATGCCCGGGCTGTACTTTTCCAACGAGCTCATCAGCAGGGACGAGGGTCT 26012 | || ||||||||| ||| ||||||||||||||||||| | ||||||||||| Sbjct 35222 GCGAGGTCTCATGCCCGGCCTGACCTTTTCCAACGAGCTCATCTCTCGTGACGAGGGTCT 35163 Query 26013 CCACAGAGATTTTGCCTGCCTGCTCTACACGGGCCACTTGCTCCACAAACCTTCTCAAG- 26071 |||| || |||||||||||||| || | ||| || | |||| | | || Sbjct 35162 GCACACGGACTTTGCCTGCCTGCTGCACTC---TCACCTG----AAGAACC-GCGCCAGC 35111 Query 26072 -AGACCGTCTACAGT---ATCATCAAAGAGGCTGTGGAGATCGAGAAGGAGTTTCNNNNN 26127 || || || ||||||| || || || |||||| |||||||| Sbjct 35110 AAGGAGGTGATTCGTGACATCATCACCGACGCCGTCCGCATCGAGCAGGAGTTTTTGACC 35051 Query 26128 NNNNNNNNNNNNNNNNNNNNNNTGGGCATGAACAACAGACTCATGAGCCAATACATTGAG 26187 ||||||||||| || ||||||| || ||||||||| Sbjct 35050 GAAGCTCTGCCTTGCGCCCTGCTGGGCATGAACTCCAACCTCATGAAGCAGTACATTGAG 34991 Query 26188 TATGTGGCCGACCATCTGCTGTGCCAGCTGGGACTCGCCAGACTCTACAGTACGCCTAAC 26247 | ||| ||||||| |||||| || || || | | |||| || | ||| Sbjct 34990 TTTGTCGCCGACCGCCTGCTGGTAGCTCTCGGCAACGAGAAGGTGTACAAGTCGTCCAAC 34931 Query 26248 CCGTTCGACTTTATGGAAAACATATCGTTGGAAGGGAAGACCAACTTCTTTGAAAAGAGG 26307 || || ||||||||||| ||||| || ||| || ||||||||||||||||| ||| | Sbjct 34930 CCCTTTGACTTTATGGAGAACATTTCCCTGGGCGGCAAGACCAACTTCTTTGAGAAGCGC 34871 Query 26308 GTCGGCGACTATCA 26321 |||| |||||| || Sbjct 34870 GTCGCCGACTACCA 34857 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 928834524654400