Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20parareesei_20[genbank_20GCA_5F001050175.1_202015-07- 08] 885 sequences; 32,070,663 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq804 154 4e-32 seq744 143 8e-29 seq510 114 4e-20 seq736 102 2e-16 >seq804 Length=175399 Score = 154 bits (170), Expect = 4e-32 Identities = 248/354 (70%), Gaps = 2/354 (1%) Strand=Plus/Minus Query 133305 CCGAAGCCCGTGCCTTTTATGGGCTACAGATTGCGATGGAAAATATCCATTCTATCACAT 133364 |||| || || |||||| || | ||||| |||||| || ||||| || || | Sbjct 35499 CCGAGGCTCGCTGCTTTTACGGCTTCCAGATCATGATGGAGAACATCCACTCCGAGACGT 35440 Query 133365 ATTCTACTCTAATTGATACTTACATCAAAGATACCGTCCAGAAGCACAAACTATTCAACG 133424 | || || || || ||||| ||||| || | |||| || | || ||||||| Sbjct 35439 ACTCCCTGCTCATCGACACTTATATCAAGGAGCACAGCCAGCGCAACTACCTCTTCAACG 35380 Query 133425 CCATTAGCGAAT-TTCCTTGTATTAAAAAGAAATCTGACTGGGCTATTAAATGGATCCAG 133483 ||||| | || ||||||| ||| ||||| |||||||||| ||| |||||||||| Sbjct 35379 CCATT-GAGACCATTCCTTGCATTCGCAAGAAGGCTGACTGGGCGATTCGATGGATCCAG 35321 Query 133484 GACAAGCGTGCGAGTTTTGCTACTCGTCTCGTTGCTTTTGCTGTAGTAGAGGGCAttttt 133543 |||||| || ||||| ||||||||||| ||||| | || ||||| || || Sbjct 35320 GACAAGAACTCGTCCTTTGCCCAGCGTCTCGTTGCCTTTGCCGCTGTCGAGGGTATCTTC 35261 Query 133544 ttCAGTGGTGCGTTCTGCTCTATTTTTTGGCTTAAAAAGCGTGGTATTCTACCTGGACTG 133603 ||||| ||||| || ||| ||||| ||||| || ||||| ||| | | || || ||| Sbjct 35260 TTCAGCGGTGCCTTTGCCTCCATTTTCTGGCTCAAGAAGCGAGGTCTCATGCCCGGCCTG 35201 Query 133604 TGTTTTTCTAACGAACTTATTTCAAGGGACGAGGCACTTCACACCGAATTTGCC 133657 ||||| ||||| || || || | ||||||| || ||||| || |||||| Sbjct 35200 ACCTTTTCCAACGAGCTCATCTCTCGTGACGAGGGTCTGCACACGGACTTTGCC 35147 >seq744 Length=46994 Score = 143 bits (158), Expect = 8e-29 Identities = 197/273 (72%), Gaps = 2/273 (1%) Strand=Plus/Minus Query 302572 TCTTCCATACTCTTGATTAAACGACGCTGAATATAACCAGTTGTAGATGTTTTTACAGCT 302631 ||||||| | ||||| | ||| |||||||| ||||| || || ||| || || || Sbjct 17720 TCTTCCAGAGCCTTGACCAGACGTCGCTGAATGTAACCTGTCTCAGCTGTCTTGACGGCC 17661 Query 302632 GTATCAATTAGACCAACACGACCACCCATAGCATGGAAGAATAGCTCTTCCGGTCGTA-G 302690 |||||||| ||||| |||||||| |||| || |||||||| | ||| ||| |||| | Sbjct 17660 GTATCAATGAGACCTTCACGACCAGCCATGGCGTGGAAGAAGAACTCGGTCGG-CGTAAG 17602 Query 302691 CCCCCCAATAAAGGAGCTCTCAACGAAACCACGCGCCTCGGGCGAATCGTCGAACTTGGT 302750 || | | | | ||| |||| || |||||||| |||||||| || | || |||||| Sbjct 17601 GCCACGCAGATACGAGTTCTCCACAAAACCACGAGCCTCGGGTGAGTAATCATCCTTGGT 17542 Query 302751 AAAGTGTGGCAGGGTCCTGTTCTCATAGCCGTATGGGATACGCTTTCCATCAACGTTCTG 302810 || || ||||| || | | | |||| | || ||||||||||| || || |||| Sbjct 17541 GAAATGAGGCAGAGTGCGATATTTGAAGCCAAACGGAATACGCTTTCCTTCGACAATCTG 17482 Query 302811 CTGTCCCAGGCACGAAATCATCTGCGAAATATT 302843 |||||||| | || ||||||| ||||| || Sbjct 17481 CTGTCCCACGAGCGCTGTCATCTGAGAAATGTT 17449 Score = 93.3 bits (102), Expect = 1e-13 Identities = 105/140 (75%), Gaps = 3/140 (2%) Strand=Plus/Minus Query 301813 AGAATTTCTTCAATACGGGGAACACCACGGGTTACGTTAGACTTGGACGCAACACCAGCA 301872 |||||||| | | |||||| ||||| | || ||||| |||||| | ||||||||| Sbjct 18497 AGAATTTCCTTGAGACGGGGCACACCGAGCGTGACGTT---CTTGGAAGACACACCAGCA 18441 Query 301873 AAGTGGAAAGTATTCAGAGTTAATTGAGTAGTTGGCTCACCAATACTTTGTGCCGCAATC 301932 |||||||| || |||||||| | || |||| |||||||| || || ||||||| Sbjct 18440 AAGTGGAAGGTGTTCAGAGTCATCTGCGTAGCAGGCTCACCGATGGACTGAGCCGCAAGG 18381 Query 301933 ATACCAACCATTTCTCCTGG 301952 | ||| |||||||| || || Sbjct 18380 ACACCCACCATTTCACCGGG 18361 >seq510 Length=17648 Score = 114 bits (126), Expect = 4e-20 Identities = 338/512 (66%), Gaps = 18/512 (4%) Strand=Plus/Plus Query 251485 GCACCGTGTGAAATCATACAATCACGCTCCATTTCACCGAAACGAAGACCACCATCGCGA 251544 || ||||||| |||||| ||||||||||||||||| ||||| || |||||||| || || Sbjct 13321 GCTCCGTGTGCAATCATGCAATCACGCTCCATTTCTCCGAATCGCAGACCACCGTCTCGG 13380 Query 251545 GCCCTACCCTCGGCAGGCTGACGAGTGAGATTAACCATAGGACCGATGGAGCGGCTATGT 251604 || | |||||| | ||||| || || | | || ||||| || ||| || Sbjct 13381 GCACGACCCTCCACCGGCTGTCGCGTCATGATCTGCACCGGACCACGGGCACGGGCGTGG 13440 Query 251605 TGCTTATCATTTACCATATGCTTGAGACGCTGGTAGAATGCGGGACCGATGAAGATGCTC 251664 ||| || | ||||| || ||| ||||||||| ||| || || | ||||| || Sbjct 13441 ATCTTGTCGTCCACCATGTGGCGGAGTCGCTGGTAGTATGTTGGTCCAAAGAAGAC-CTG 13499 Query 251665 GAAGGCATTTGCTCTC---CAGTTAGAGCGTTATACATAACTTCGTTTCCATTAGATTCA 251721 | | | | ||| | | || || | || ||||| | ||| || ||| | Sbjct 13500 G--GCCCTCAGCTTGCGGCCCGTGTGACCATTGTACATGATCTCGAAGCCTCGAGACTGG 13557 Query 251722 TAACCAAGTTT---CTGTAGCTCTGAAGCAATATCACCAATCTTGAATTTGCTAAAACTG 251778 || || | || | | ||||| ||| | || | | ||| | | |||| | Sbjct 13558 TAGCCGTGCTTTCGCAGCAGCTCCGAAACCGAGTCGAC---CGTGACATCGGTAAAGGGG 13614 Query 251779 GTGCCGTCTCCGTAAAGACCCATTTGAA--TCAACACTTTGCCTAAAAGTGTCTCTTTCA 251836 || | || || | | |||| | || | | || |||| || || ||| ||| Sbjct 13615 GTAGCATCACCCTCCATACCC--TCCAACGTAGAGACCTTGCTTAGGAGACACTCAATCA 13672 Query 251837 GTTGGGCGATAGTCATACGACTGGGAATAGCATGGGGATTGATGATGATGTCGGGTTTCA 251896 || ||||| ||||||||| ||||| || ||||| ||||||||||||||||| | | Sbjct 13673 AGTGAGCGATTGTCATACGAGACGGAATGGCGTGGGGGTTGATGATGATGTCGGGCGTAA 13732 Query 251897 GTCCATCAGCAGTGAAGGGCATATCCTTTTCCTCAATAA-TGTTTCCAATAGTTCCCTTT 251955 ||| || ||||| ||||| |||| | | | ||| || |||||||| |||||| Sbjct 13733 TTCCCTCTCTGGTGAACGGCATGTCCTCCTGC-CGGTAAGTGACACCAATAGTGCCCTTT 13791 Query 251956 TGTCCGTGACGAGAACTGAACTTATCACCAAT 251987 |||||||||||||| ||||| |||||||| Sbjct 13792 TGTCCGTGACGAGACGCAAACTTGTCACCAAT 13823 >seq736 Length=134049 Score = 102 bits (112), Expect = 2e-16 Identities = 332/512 (65%), Gaps = 13/512 (3%) Strand=Plus/Minus Query 155640 ATCTCACAGCACAGGTTAGAACTCTTGATGGTGCCTAAATTCTTCTGGTTAGATTTACTG 155699 |||||| ||| |||||||| || ||||||||| || ||||||||||| || | | Sbjct 47404 ATCTCAGTGCAGAGGTTAGAGCTGCGGATGGTGCCCAAGTTCTTCTGGTTGCTCTTGCGG 47345 Query 155700 TTACAAGCATCCTTGTATAGAATGTATGGGGTTCCTGTCTCCATCTGTGCGTCCAGAATC 155759 || || |||||||| || ||| | ||| | || ||||| |||| || ||||| || Sbjct 47344 TTGCAGTGGTCCTTGTAAAGCATGAAGGGGTTACCAGTCTCGGTCTGGGCCTCCAGGATG 47285 Query 155760 TTTAGCCAGAGGTCACGGGCATTAATTTGCTTGTTGTATCTGCCTTCCGACTCATA--TT 155817 ||| || | | ||| || ||| | || ||| ||| || || Sbjct 47284 GAGTACCACAGCTTCTGAGCACGGATGGTCTTACGACCACGTCCCTCCCTCTCGTACTTT 47225 Query 155818 TCATATACAGCGTTCGGTAATCCTCACCGTAACAATCACTCAGTCCAGGGCACTTATCGG 155877 || || | ||| | | ||||| ||||| || ||| || |||||||| | | || Sbjct 47224 TCGTACAGAGCCTCAA--ACTCCTCGCCGTAGCAGTCAGCAAGACCAGGGCATTCGTTGG 47167 Query 155878 GGCAAAACAGCGACCAA---ATTTTATTACCGATTACACGCTCCATAAATACATCACTCG 155934 |||| | |||| ||| | || || ||| |||||| ||| || | ||| Sbjct 47166 GGCACATGAGCGTCCAGTCCAAGTTCTTCTCGA---CACGCTTCATGAAGAGATCGGGGA 47110 Query 155935 CCCAAATAGCATAGAAAAGGTCCCTTGCCTTTGACTCCTCATCGCCGTGATTCTTCCGTA 155994 ||| | |||| ||| | ||| | || |||||| | |||||| ||||| || | Sbjct 47109 TCCACAGAGCAAGGAACAAGTCGCGGGCGCGAACCTCCTCCTTGCCGTGGTTCTTGCGGA 47050 Query 155995 GCTCTAAGAATTCCTCAATATCAGGATGGTGTGGCTCCAGATACATAGCAAAACTACCAT 156054 | || | ||| || | || | || ||||| || || || ||||| |||| Sbjct 47049 GATCAAGGAAGTCAAAGACGTCGGCGTGCCAGGGCTCGAGGTAGATGGCAAAGGCACCAG 46990 Query 156055 TCCTCTTG---CCACCCTGATCTACATACCGAGCAGTCTTATTGAAGACACCTAGCATAG 156111 | |||| |||||||| || || || || ||||| || |||||||| | ||||| | Sbjct 46989 GACGCTTGTTGCCACCCTGGTCGACGTATCGGGCAGTGTTGTTGAAGACTCGCAGCATGG 46930 Query 156112 GAATAATACCATTGGAAGTGCCATTGGTTCCG 156143 | ||||| || ||||| ||||| ||||| ||| Sbjct 46929 GGATAATGCCGTTGGAGGTGCCGTTGGTGCCG 46898 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471800910968245