Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20parareesei_20[genbank_20GCA_5F001050175.1_202015-07- 08] 885 sequences; 32,070,663 total letters Query= NC_021923.1 Length=140633 Score E Sequences producing significant alignments: (Bits) Value seq736 248 8e-61 seq373 102 7e-17 >seq736 Length=134049 Score = 248 bits (274), Expect = 8e-61 Identities = 1108/1729 (64%), Gaps = 56/1729 (3%) Strand=Plus/Minus Query 138303 CTGATCGATGAAAGCGCCTCGATCAATGGCCATGTTAATTAAATTTTTACTTTTC---AT 138359 ||| ||||||||||| || |||||| ||||| | | | ||| || | || Sbjct 48224 CTGGTCGATGAAAGCACCACGATCAGCCGCCATCTGGACGA---TTTGACGCTGAGATAT 48168 Query 138360 CTCCCACACGGTCTTGTATAGATCACGAATATGTCGCGGTATTGTTGC-AATATTTTGAA 138418 |||||| ||||||||||| || | || | | ||| ||||| ||| || || | Sbjct 48167 CTCCCAGACGGTCTTGTACAGGGCCTTGATGTC-CTCGGGGATGTTGGGAATGTTCTGGA 48109 Query 138419 TGCTCCCGTTGGCCGCAATGATGCGATTTCTCATGTCATCGTTGTACAGATTCAACTTGA 138478 || ||||| | ||||||||||| || ||||| | || |||| | || Sbjct 48108 TGGAGCCGTTCTCGGCAATGATGCGGTTCTTCATGGCGTCAGACCACAGGCCGGTGTCGA 48049 Query 138479 TCAAGTCGTTTATCAGATATCTGTTTATGACCTGAAATTCACCGGCCAATACTCGACGAA 138538 || ||| || | || | ||| | ||||| || ||||| || | || || || Sbjct 48048 CCAGGTCCTTGAGAAGCCAAGGGTTGACAACCTGGAACTCACCAGCAAGGACACGTCGCT 47989 Query 138539 CGTAAATGTTGTTGGTGAAAGGCTCAAACGATTCGTTGTTTCCCAGAATCTGAGCCGTGG 138598 ||| |||||| |||| | ||||| || |||||||||| ||||||||||||| || Sbjct 47988 GGTAGATGTTGGAGGTGTAGGGCTCGAAGCATTCGTTGTTGCCCAGAATCTGAGAGGTAC 47929 Query 138599 TCGCGGTCGGCATGTACGCCACCAAAAGAGAATTCCGTAAACCGTGAAGCTTGATTCGTT 138658 | || || ||||| || || | | || || | |||||| |||||| | | Sbjct 47928 TGGCAGTGGGCATAGGAGCGACGAGCAAGCTGTTGCGGACACCGTGCTCCTTGATCTGCT 47869 Query 138659 CCTTGAGCGACGACCAGTCCCACAAATCGCTAGGTTTTTTGTTCCACATATCGTACTGTA 138718 ||||||| || ||| ||||||| ||| || || || |||||| |||||||| | Sbjct 47868 CCTTGAGGGAGTCCCACTCCCACAGGTCGGAGGGCTTGACGTCCCACATGTCGTACTGGA 47809 Query 138719 ACATTCCCAAACTTGCGGGACTGCCTTCGTACGAATCGTA--TACACCAAACTCTTGCGC 138776 || ||| | ||| || || | | |||| || || | | || |||| || Sbjct 47808 GGATACCCTCAGATGCAGGCGATCCCTTGAACGATTCATAGGGGCCCTCGAC-CTTG-GC 47751 Query 138777 CAACTCGTTGCTCGCCTCGAGCGCACCATAGTAAATAGTTTCGGCAATCTGCTGATTGAG 138836 | ||| || || || || || ||| |||||| || ||| ||||||| || || Sbjct 47750 AATCTCCATGGAAGCTTCAAGGGCGGCATGGTAAATGGTCTCGAAGATCTGCTTGTTCAG 47691 Query 138837 CAATCGGGCCTCGGCGCTCTCGTACGGCATGCGGAGCATCG-TGAACGCGTCGGCCAGCC 138895 | || ||||||| ||| | |||| || || | || ||||||||| || || | Sbjct 47690 CTCGCGAGCCTCGGGAGACTCAAAGGGCAGACGCAG-AGCGAGGAACGCGTCAGCAAGAC 47632 Query 138896 CTTGCACGCCCACTCCGACAGGGCGATGGCGCAGATTTGACGCTTTTGCG----GCTTCG 138951 | || || || || |||| ||| || ||||||| || ||| ||||| | ||| Sbjct 47631 CCTGGACACCGACACCGATAGGTCGGTGGCGCA----TGTTGCTGTTGCGAGCCTCCTCG 47576 Query 138952 ATAGGATAATAGTTTACATCGATGATTTTGTTTAAATTTCGCACGACCACCTTAGTCGTA 139011 | || || | ||| ||||||||||| ||| | || || ||||||||||| || | Sbjct 47575 ACGGGGTAGTGGTTCACATCGATGATGCGGTTGAGGTTGCGGACGACCACCTTGGT-GAC 47517 Query 139012 TGCTTTAATCGT-TCAAAATCGTATGTGCCCCCGTTGTCGTCGACGACGTCGACAAATTT 139070 | | | || | | | || ||||| |||| |||||| |||||| | | || || Sbjct 47516 TTCGTGAAGCTTCTTGAAGTCGTAGCAGCCCTCGTTGTAGTCGACAAAGGCGGGAA---- 47461 Query 139071 GTTGACACAAATCGAGGCTATGTTGCACACCGCCACTTCGTCGGGGTCGCTGTATTCGAC 139130 | || | ||||| | |||||| || || || ||||||||| | | ||| || | Sbjct 47460 -GGGCCAGA----GAGGCCAAGTTGCAGACAGCGACCTCGTCGGGGGCACAGTACTCAAT 47406 Query 139131 AATTTCGGCACACAAATTACTACACTTGATCGTACCTAAATTTTGTTGATTGCTTTTTCG 139190 || || | || | ||| | ||| || || || || | || ||||| || || Sbjct 47405 GATCTCAGTGCAGAGGTTAGAGCTGCGGATGGTGCCCAAGTTCTTCTGGTTGCTCTTGCG 47346 Query 139191 GTTACAAGCATCTTTGTAAAGCATATACGGTGTGCCAGTTTCCACTTGTGTCTCTATAAT 139250 ||| || || ||||||||||| | || | ||||| || || | ||| | || Sbjct 47345 GTTGCAGTGGTCCTTGTAAAGCATGAAGGGGTTACCAGTCTCGGTCTGGGCCTCCAGGAT 47286 Query 139251 GAATTTGAACAAGTCCCTAGCTTGTATTTGACGCACG-TAAAGTTCGTCGCGCTCGTACT 139309 | | | ||| | | ||| | | | | | ||| | || | || | |||||||| Sbjct 47285 GGAGTACCACAGCTTCTGAGCACGGA-TGGTCTTACGACCACGTCCCTCCCTCTCGTACT 47227 Query 139310 TTTCGTAGAGTTCGTCGAATCGTTCACCGTAGGCGTCAGAAAGATCGCGACACTTGTCAG 139369 ||||||| || | || || || |||||| ||||| |||| | | || | || | Sbjct 47226 TTTCGTACAGAGCCTCAAACTCCTCGCCGTAGCAGTCAGCAAGACCAGGGCATTCGTTGG 47167 Query 139370 GACACATGAGCGACCATACGCCGTTCGCCTTGACGCGCCTCATGAACAGATCCGGAATCC 139429 | |||||||||| ||| | |||| || ||| ||| ||||||| ||||| || |||| Sbjct 47166 GGCACATGAGCGTCCAGTCCAAGTTCTTCTCGACACGCTTCATGAAGAGATCGGGGATCC 47107 Query 139430 ACAAAGCGAACAGCAAATCGCGCGCCTTCTTATCTTCCGAACCCATGTTACGTTTC--AT 139487 ||| ||| | | ||| ||||| || || ||| || ||| || | | Sbjct 47106 ACAGAGCAAGGAACAAGTCGCGGGCGCGAACCTCCTCCTTGCCGTGGTT--CTTGCGGAG 47049 Query 139488 GTTAAGGAAATCAAAAACGTCAGCGTGCCATGGTTCCAGATAGATGGCCATTGCGCCTTT 139547 | |||||| ||||| ||||| |||||||| || || || |||||||| | || || Sbjct 47048 ATCAAGGAAGTCAAAGACGTCGGCGTGCCAGGGCTCGAGGTAGATGGCAAAGGCACCAGG 46989 Query 139548 CCG---TTTGCCACCTTGATCGACGTGTCGTACAGCATTATTGAATACGCGCAACATCGG 139604 || |||||||| || ||||||| ||| ||| || ||||| || |||| ||| || Sbjct 46988 ACGCTTGTTGCCACCCTGGTCGACGTATCGGGCAGTGTTGTTGAAGACTCGCAGCATGGG 46929 Query 139605 CTCCAGACCGCTCGCTGTTCCGTTGGTGCTACGGATG--GGA-CTGTTGCGAGCTCGGAC 139661 | ||| | | || |||||||||| |||| ||| | || || |||| Sbjct 46928 GATAATGCCGTTGGAGGTGCCGTTGGTGCCGGCGATGTAGGAGCCAGTG---GCACGGAT 46872 Query 139662 GTCATGTACATTGATGCCGATTCCGCCGCCAAATTTGGATATTAAAACGCAATCGCGT-- 139719 | || || || | ||||| || || | | ||||| || | ||| || | Sbjct 46871 GCGGTGGACGTTCAGACCGATGCCACCAGCCATCTTGGAAAT--CATGGCACACGTCTTC 46814 Query 139720 AATGTCTCGTATATACCTCTTATGCTGTCGTCCTGCATCGTGACCAGAAAGCATGACGAA 139779 | || || || ||||| ||||||||||||| ||| ||||| |||||||| || Sbjct 46813 AGGGTGTCATAGATACCCTCAATGCTGTCGTCCTTCATGTCCACCAGGAAGCATGAGGAC 46754 Query 139780 AGTTGCGGTAGTTTCGTGCCGGCTGCAAACAGAGTAGGACTCGCGTGCGTGAACATTTGT 139839 || || | | | ||||| || || || ||||| ||||| ||||| | | Sbjct 46753 AGCTGGGCTTGCGGGGTGCCAGCATTGAAGAGGGTAGGGGAGGCGTGGGTGAAGAACTTG 46694 Query 139840 TTCGACATCAATTCGTACGTTTCGATGGCGCTCACAATATCCCTTCCGTGGATACCGACA 139899 | ||||| | | ||| || |||| | | | | |||| || ||| ||| || || Sbjct 46693 CTGGACATGAGGTGGTATGTCTCGAGGACACGCTCAATGTCGTCTCCCCAGATGCCAACG 46634 Query 139900 GAGACTCGCATCAGCATATGTTGGATCCGTTCGGCCACCGCGCCCTCGAtttttttCAG- 139958 | |||||||| | ||| ||||| ||| ||| | | | ||| |||| || || Sbjct 46633 GCCACTCGCATAATCATGTGTTGTGGCCGCTCGACAATCTTGCCGTCGAGCTTCAGAAGG 46574 Query 139959 -ATAACCGTTCTCTAGGGTCTTGTAGCCAAAGTACCTATAGTTGAAATC 140006 || | || ||| || |||||| |||||||||| |||||||| || Sbjct 46573 TATGATCG--CTCCAGCGTCTTGAAGCCAAAGTATTGGTAGTTGAAGTC 46527 >seq373 Length=44988 Score = 102 bits (112), Expect = 7e-17 Identities = 148/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||||||||| | || || || ||||| || || || || ||||| || || | || Sbjct 35859 ATGCAGATCTTCGTCAAGACCCTCACCGGCAAGACCATCACCCTCGAGGTCGAGTCGTCC 35918 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || || |||||||| ||||| || || || ||||| || || Sbjct 35919 GACACCATCGACAATGTGAAGTCCAAGATCCAGGACAAGGAGGGTATCCCTCCGGACCAG 35978 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || ||| | |||||||| || || ||||| ||||| ||| | | || || || ||| Sbjct 35979 CAGCGTCTCATCTTTGCTGGCAAGCAGCTTGAGGACGGCCGAACCCTCTCCGACTACAAC 36038 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGT 24912 || || ||||| || || || ||| |||| Sbjct 36039 ATCCAGAAGGAGTCTACCCTCCACCTGGT 36067 Score = 91.5 bits (100), Expect = 1e-13 Identities = 113/155 (73%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||||||| |||| || || || ||||| || ||||| || ||||| ||| | | Sbjct 36601 ATGCAGATCTTTGTTAAGACACTGACGGGTAAGACGATTACTCTGGAAGTGGAATCATCT 36660 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 || || | || | || || ||||| || ||||| || || || || || || || Sbjct 36661 GATACCATCGACAACGTCAAGTCGAAGATTCAGGACAAGGAGGGTATCCCGCCTGACCAG 36720 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGA 24858 || || ||||||||||| || || |||||||| || Sbjct 36721 CAGCGCTTGATCTTTGCTGGTAAGCAGCTGGAAGA 36755 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 449892623007800