Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20parareesei_20[genbank_20GCA_5F001050175.1_202015-07- 08] 885 sequences; 32,070,663 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value seq736 170 3e-36 seq804 168 1e-35 seq162 122 1e-21 seq247 116 6e-20 seq396 111 2e-18 seq294 98.7 2e-14 seq691 87.8 3e-11 >seq736 Length=134049 Score = 170 bits (188), Expect = 3e-36 Identities = 339/504 (67%), Gaps = 21/504 (4%) Strand=Plus/Minus Query 2073540 CTGGTCGACATAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACAAGGCCGTTGGA 2073599 ||||||||| || || || |||| ||| ||||| || |||||||| | || ||||||||| Sbjct 46973 CTGGTCGACGTATCGGGCAGTGTTGTTGAAGACTCGCAGCATGGGGATAATGCCGTTGGA 46914 Query 2073600 CTCGCCGTTGGTGCCCGCCACGTAGGCGCCCGAGGCGCGCACCTTGTGCGCGGCAAAGCC 2073659 |||||||||||| || | ||||| ||| | ||| || | ||| || | || Sbjct 46913 GGTGCCGTTGGTGCCGGCGATGTAGGAGCCAGTGGCACGGATGCGGTGGACGTTCAGACC 46854 Query 2073660 GATGCCGCCGGCCGCCTTGGAGATGAGCGCGCACTTTTTCAGCGTCTCGTAGATGCCCTC 2073719 |||||| || ||| |||||| || | || ||| | ||||| || || ||||| ||||| Sbjct 46853 GATGCCACCAGCCATCTTGGAAATCATGGCACACGTCTTCAGGGTGTCATAGATACCCTC 46794 Query 2073720 GATCGAGTCGGCCTTCATGTCCAACAGAAAGCACGACGAGTTTTGCGGGCGCGCCGTGCC 2073779 || |||| |||||||||||| ||| ||||| || || || | ||| ||||| Sbjct 46793 AATGCTGTCGTCCTTCATGTCCACCAGGAAGCATGAGGACAGCTGGGCTTGCGGGGTGCC 46734 Query 2073780 GGCATTGAAGAGCGTGGGCGTCGCCGCCGTGTACGACTGTTGGGACATGGCCTCGTAGGT 2073839 ||||||||||| || || | || ||| | ||| ||||||| | ||| || Sbjct 46733 AGCATTGAAGAGGGTAGGGGAGGCGTGGGTGAAGAACTTGCTGGACATGAGGTGGTATGT 46674 Query 2073840 GGCGAGCACGCGCGCCAGCGCGTCTTGGACGTCGGCAAACCCATAGTGGCCGATGGCGAC 2073899 |||| || ||| | | ||||| || || ||| | ||| || Sbjct 46673 CTCGAGGACACGCTCAATGTCGTCT---------------CCCCAGATGCCAACGGCCAC 46629 Query 2073900 GCGCATGATCATGTACTGGGGTCGCTCGACGA---CGGCGTCGCGCACCTTGGTCAGGTA 2073956 ||||| ||||||| || || |||||||| | | ||||| | ||| ||||| Sbjct 46628 TCGCATAATCATGTGTTGTGGCCGCTCGACAATCTTGCCGTCG---AGCTTCAGAAGGTA 46572 Query 2073957 GGACCGACGCAGGGTCGCCAGGCCAAAGTACGAGTAGGCCAGGTCGCGCTCGTGGCGGAT 2074016 || || ||| ||| | ||||||||| |||| | ||| || |||| | ||| Sbjct 46571 TGATCGCTCCAGCGTCTTGAAGCCAAAGTATTGGTAGTTGAAGTCTCGGTCGTAGACGAT 46512 Query 2074017 GGCGGCGTCGAGGGCCTCCTTGTG 2074040 ||||| |||||| |||||||||| Sbjct 46511 GGCGGAGTCGAGCTCCTCCTTGTG 46488 >seq804 Length=175399 Score = 168 bits (186), Expect = 1e-35 Identities = 237/331 (72%), Gaps = 9/331 (3%) Strand=Plus/Plus Query 794340 ACCTTCGTCGCGACTGATCAATTCGTTGCTAAAGCAGAGGCCGGGCATGAGGCCGCGCTT 794399 ||| ||||| ||| ||| | |||||| |||| |||||||||||||| || ||||| Sbjct 35165 ACCCTCGTCACGAGAGATGAGCTCGTTGGAAAAGGTCAGGCCGGGCATGAGACCTCGCTT 35224 Query 794400 CTTGAGCCAAAAGATGG---CACAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGC 794456 ||||||||| || |||| || || || || ||| ||||| |||||||| ||||| Sbjct 35225 CTTGAGCCAGAAAATGGAGGCAAAGGCACCGCT---GAAGAAGATACCCTCGACAGCGGC 35281 Query 794457 AAAGCCGACGAGCCGCTCGGCAAAAGTGTCCAGGCCCTCTTTGTTGATCCACTTCATCGC 794516 |||| | ||||| |||| |||||| | | | || | | |||||| ||||| Sbjct 35282 AAAGGCAACGAGACGCTGGGCAAAGGA---CGAGTTCTTGTCCTGGATCCATCGAATCGC 35338 Query 794517 CCACTCTGCCTTTTTCCTCACCGAGGGCACCGTGTCGATGGCGCGAAAGAGGTGGTCCTT 794576 ||| || ||||| || | | | || | || || |||||| ||||||| || Sbjct 35339 CCAGTCAGCCTTCTTGCGAATGCAAGGAATGGTCTCAATGGCGTTGAAGAGGTAGTTGCG 35398 Query 794577 CTCGACCGGGTCCTTGACGTAGGTGTCGATGAGGAGCGAGTAGGTCTCTGAGTGGATGTT 794636 || | | ||||||| || ||||||||||| || ||||| ||||| ||||||||||| Sbjct 35399 CTGGCTGTGCTCCTTGATATAAGTGTCGATGAGCAGGGAGTACGTCTCGGAGTGGATGTT 35458 Query 794637 TTCGATGGCGATCTGGAAGCCATAAAAGCAG 794667 || || |||||||||||| ||||||||| Sbjct 35459 CTCCATCATGATCTGGAAGCCGTAAAAGCAG 35489 Score = 127 bits (140), Expect = 3e-23 Identities = 178/250 (71%), Gaps = 0/250 (0%) Strand=Plus/Plus Query 793891 TGACGCCCGCCTTGGCATACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGA 793950 |||| || ||||| || ||| | |||||| ||| || |||||||||||||| | | Sbjct 34843 TGACACCGGCCTTCTGGTAGTCGGCGACGCGCTTCTCAAAGAAGTTGGTCTTGCCGCCCA 34902 Query 793951 GCGAGATCAACTCCATCCACGGGAACGGGTTGGCCGTCAGGTAGTGCTTCTCGCACCCGA 794010 | || || |||||| | || ||||||| || | ||| ||||||| |||| Sbjct 34903 GGGAAATGTTCTCCATAAAGTCAAAGGGGTTGGACGACTTGTACACCTTCTCGTTGCCGA 34962 Query 794011 GCGACGCAAGCAGGCGGTCGGCGACGAATTCAATGTACTGGCACATGAGGGCGGCGTTCA 794070 | | | ||||||||||||||||| || ||||||||||| ||||||| || ||||| Sbjct 34963 GAGCTACCAGCAGGCGGTCGGCGACAAACTCAATGTACTGCTTCATGAGGTTGGAGTTCA 35022 Query 794071 TGCCGATGAGCGCCACGGGCAGCGACTCGCTGACAAACTCTTTCTCGATCTCGACGGCCT 794130 |||| | || || ||||| | ||| | | |||||| | |||||| |||||| | Sbjct 35023 TGCCCAGCAGGGCGCAAGGCAGAGCTTCGGTCAAAAACTCCTGCTCGATGCGGACGGCGT 35082 Query 794131 CGATGATGAT 794140 || ||||||| Sbjct 35083 CGGTGATGAT 35092 Score = 122 bits (134), Expect = 1e-21 Identities = 158/216 (73%), Gaps = 3/216 (1%) Strand=Plus/Plus Query 796150 GCCTCGGGTACTTGGACCTCCTTCATGAAGCGGCCGGCCAGGTTCTCAGCCACGATGCCG 796209 |||||||| | |||||||| ||||||| || |||||||||| || |||||| Sbjct 35493 GCCTCGGGGATCTGGACCTCGCCGCTGAAGCGCTCGACCAGGTTCTCGTTGACAATGCCG 35552 Query 796210 TCGCTGGCGGCGAAAAAGGCGAGGACGTGCTTGATAAAGTGACGCTCGTCGTCGCTGAG- 796268 || ||||||||| ||||| |||| ||| ||| |||| |||||| ||| | || Sbjct 35553 TCCGAGGCGGCGAAGAAGGCCAGGATGTGAGAGATGAAGTACTTCTCGTCATCGTTCAGG 35612 Query 796269 CGA--GACCCAGTGGACCGTGTCGGCGCCGAGGTCGACCTCCTCGGCGGTCCAAAAGGAG 796326 || | ||||| | | ||| | ||||| | ||||||||||||||| ||||| Sbjct 35613 CGGTTGTTCCAGTCGTGCAGGTCCTTGGACAGGTCAATCTCCTCGGCGGTCCAGAAGGAA 35672 Query 796327 GCCTCGGCCTTTTTGTACATCTCCCATATCCGTTGG 796362 |||||||||||||||||||| | ||| ||| ||||| Sbjct 35673 GCCTCGGCCTTTTTGTACATTTGCCAGATCTGTTGG 35708 >seq162 Length=159780 Score = 122 bits (134), Expect = 1e-21 Identities = 302/456 (66%), Gaps = 2/456 (0%) Strand=Plus/Minus Query 118618 TCTTGCGCACGCCGCGCATGCACACGCACATGTGGAGGCCCTCGAGCACGACGCCGACGC 118677 |||| |||| |||||||| || ||||| |||| | ||| | ||||| |||| | Sbjct 55316 TCTTCTGCACACCGCGCATCACCATGCACAGGTGGCTGGACTCTATGACGACAGCGACTC 55257 Query 118678 CGCGCGCGCCCGTGACCTCGCTGATGCTCTCGGCGATCTGGCGCGTGAGCGCCTCCTGCA 118737 | | | | | ||| ||| ||| | |||||| | || || ||| || | Sbjct 55256 CCTGGGGCCGCAGGACGTCGAAGATTGCGTTGGCGATTTCCTTGGTAAGGCGCTCTTGAA 55197 Query 118738 CCTGGAAGCGGTCCGAGAGCATGTCGACGATGCGCGGGATCTTGCTCAGGCCGATGATCC 118797 ||| | |||| |||| ||||||| |||||||||| | |||| | |||||||| Sbjct 55196 TCTGTAGGCGGCGGGAGAACATGTCGGCGATGCGCGGCAGCTTGGAGATGCCGATGACGG 55137 Query 118798 TGCCCGCGGGCAGGTAGCCCACGTGCGCCTTGCCGATAAAGGGCAGCAGATGGTGCTCGC 118857 | ||| | |||||| | |||| |||||||| | ||||||| ||| |||||||||| Sbjct 55136 CGTTGTTGGGGATGTAGCCGATGTGCACCTTGCCGGTGAAGGGCACCAGGTGGTGCTCGC 55077 Query 118858 ACATGGAGAAAAAGTCAATGTCGCGCACGGTCACCATCTC-GCCCGACGTCTCGGCAAAG 118916 | | |||||| | ||| |||| ||| |||||||| | | | ||| |||| Sbjct 55076 AGAGGGAGAAGATGTCGATGTTCTTGACGACAACCATCTCAGAGTGGCC-CTCCTGAAAG 55018 Query 118917 AGGGCGTCGCCGACGGCCTCGGCCAGGGTCAGGCGGTGGCCGCGCGTGCGCTCCACCATG 118976 | |||| || |||| ||| | | || | || ||| ||||| || |||| Sbjct 55017 ATGGCGCCGTTGACGATGTCGAAGACGTTCTGCTCGTAGCCCTGCGTGAAGGTCATCATG 54958 Query 118977 GCCTTGGCCACGCGCATGGGCGTGTCCAAGAGGCCCTCGCGCGCCACGTCCTCGCCCAGA 119036 |||||||| |||| ||||||| |||| |||||||| || || |||||||||| Sbjct 54957 GCCTTGGCATAGCGCTCGGGCGTGGCCAACAGGCCCTCTCGGGCAGGATCCTCGCCCACG 54898 Query 119037 CAGACCAGCATGGTCCTCGTGGCGTCGGCCATGCGC 119072 || | |||| ||| | |||| | ||||||| Sbjct 54897 CACTCGAGCAGCGTCTTGACGGCGCCCTTCATGCGC 54862 >seq247 Length=67129 Score = 116 bits (128), Expect = 6e-20 Identities = 91/109 (83%), Gaps = 0/109 (0%) Strand=Plus/Plus Query 2035647 GCCGCCAACTACCTCGACATCAAGCCCCTCCTCGATTTGGGGTGCAAGACCGTGGCCAAC 2035706 ||| |||| | ||| || ||||||||||| || ||| | || |||||||||||||||||| Sbjct 37590 GCCTCCAATTTCCTGGATATCAAGCCCCTTCTTGATGTTGGCTGCAAGACCGTGGCCAAC 37649 Query 2035707 CTTATCAAGGGCAAGTCGCCCGAGGACATCCGCAAGACCTTTAACATCA 2035755 | |||||||| ||||| |||||||| || |||||||| || ||||||| Sbjct 37650 ATGATCAAGGGTAAGTCTCCCGAGGAGATTCGCAAGACTTTCAACATCA 37698 >seq396 Length=75936 Score = 111 bits (122), Expect = 2e-18 Identities = 124/163 (76%), Gaps = 2/163 (1%) Strand=Plus/Plus Query 1485471 GTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCAT 1485530 ||||||||||||||||||||| ||||| |||||||||||| ||||||| || || ||| Sbjct 53211 GTACTTGGTGACGGCCTTGGTGCCCTCAGAGACGGCGTGCTTGGCCAGCTCACCCGGCAG 53270 Query 1485531 GATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGCG 1485590 |||||| || |||| ||||||||||| |||| ||| ||| |||||| || | Sbjct 53271 GATCAGTCGGACGGATGTCTGGATCTCTCGGGAAGAGATTGTGGACTTCTTGTT-GTAGG 53329 Query 1485591 C-GCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTC 1485632 | ||||| | ||||||||| | | ||| |||| ||||| Sbjct 53330 CGGCCAGCTTGGAAGCCTCGGTGGCAACGCGCTCGAAGATGTC 53372 >seq294 Length=36417 Score = 98.7 bits (108), Expect = 2e-14 Identities = 319/478 (67%), Gaps = 22/478 (5%) Strand=Plus/Plus Query 2175026 GGTGTGTGGCTGCGCGGCGGTGCGCACGGCATCGAGCGCCGTTGCC-ACGCTGCCGTCGG 2175084 |||| |||| |||||| | || | |||||||| || | ||| | ||||||||||| Sbjct 22416 GGTGCTTGGC--CGCGGCAGCGCCAATGGCATCGATGGC-GACGCCGAGGCTGCCGTCGG 22472 Query 2175085 TGCCGTTTTTAAACCCGACCGGCAACGGCAGCGCCGACGCCATTTCGCGGTGCACCTGGC 2175144 | ||||| || || || || || || | ||| | || || | || ||||||| |||| Sbjct 22473 TTCCGTTCTTGAAGCCCACGGGGAAGGACAGGCCGGAAGCGAGCTCACGGTGCAGCTGGG 22532 Query 2175145 TCTCGGTGGTGCGCGCGCCCACGGCGCCCCACGCCACGAGGTCTGCCA--AATAGGGCGC 2175202 |||||| || |||||||| | |||||| | | | ||| || | || ||| | Sbjct 22533 ACTCGGTCGTTCGCGCGCCAATGGCGCCGACGGAGATGCAGTCGGCGAGGAACTGGGGGG 22592 Query 2175203 CACCAAAGGGCTGAGAAACTCGACAGCCACGGGCTGGCCGACGTCGACGACCAGGTCG-C 2175261 | | | ||| | |||| || | |||| |||| | || | | |||||| | Sbjct 22593 AG--ATGGTGTCGAGCATCTCGGTGGCAATGGGCATGCCGTTG--GAGGTC-AGGTCGAC 22647 Query 2175262 GCAGCAGTCGACGCGATGTGGCG-AGGCCGGCGGCCAGGCGGCACGACCCGTCGAGGTCG 2175320 | || || || || || | || ||||| | | || | ||| ||||| ||| Sbjct 22648 GAAG-AGCCGGCGGGA-GACACGCAGGCCCTTGTTGATCTGGAAGGACGAGTCGATATCG 22705 Query 2175321 GGGTCGCTGGCCAGGCCCTTCCACCCGACGGTCGTGCGCGGCTTTTCGACATAGGCGCGC 2175380 || ||| || |||||||||||| |||||||||||||| ||||| || | ||||||||| Sbjct 22706 GGATCGTTGATCAGGCCCTTCCAGCCGACGGTCGTGCGAGGCTTCTCCAGGTAGGCGCGC 22765 Query 2175381 ATGACCACCAGGAGAGCGTCGCCGACCTCTGTCTCGGCAAAGGTGCGCA--GCCGTCGGC 2175438 || || | ||| ||||| ||| || |||||| | || ||| | || | ||| Sbjct 22766 ATCACGATGCAGAGGTCGTCGGCGAGCT---TCTCGG-AGAGCTGCTTAAGGCGGGCGG- 22820 Query 2175439 CATACTCGACGATGGCCTGGGGATCGTGCGCCGAACACGGACCGACGACCACCAAGAG 2175496 | |||||| | ||| | ||| ||||| || || || |||||||| || || || Sbjct 22821 CGTACTCGTGGGCGGCTTCGGGGTCGTGGATGGAGCAGGGGCCGACGACGACTAATAG 22878 >seq691 Length=50580 Score = 87.8 bits (96), Expect = 3e-11 Identities = 201/301 (67%), Gaps = 4/301 (1%) Strand=Plus/Plus Query 2019141 GGCGTGGACGTCGTGCGTAGAATCATCAAG--CATCACGCTTCGAAAAGAATCGACCTGC 2019198 ||| | ||||| || |||| ||||||| | || ||| ||| | | || | ||| Sbjct 13796 GGCATTGACGTTGTTCGTAACCGCATCAAGGGCTTCGCGCA--GAAGAAAGTCACCTTGC 13853 Query 2019199 CGCCCGGCCGCCACAAGGTGATCATCCTCGATGAGGCCGACTGCCTTACGTCGGCGGCCC 2019258 | ||||| | |||||| | ||||||| || || ||||| || | || || | |||| Sbjct 13854 CTCCCGGTAGGCACAAGCTCGTCATCCTTGACGAAGCCGATAGCATGACCTCTGGTGCCC 13913 Query 2019259 AGCAGGCCCTCCGATCGACCATGGAAAAGTACACCAACACGACGCGGTTTGCGCTGGCCT 2019318 ||||||| || || || ||||||| ||| |||| || || || ||||| | || | Sbjct 13914 AGCAGGCTCTGCGGAGAACGATGGAAATCTACTCCAATACCACTCGATTTGCATTCGCTT 13973 Query 2019319 GCAACACGTCGTCGATGGTCATCGAAGCCCTCCAGAGCCGTTGCGCCATCTTGCGCTTTG 2019378 ||||| ||| | | ||||||| | || ||| || ||||| ||| | || | | Sbjct 13974 GCAACCAGTCCAACAAGATCATCGAGCCGCTGCAGTCACGATGCGCAATCCTTCGATACG 14033 Query 2019379 CGCGCCTCACCGACGCCCAGATCGCCGCGCGTCTGCGCGAGATTATCGACGCCGAAAAGG 2019438 | | || |||| || ||| ||| |||| |||||||||| || ||||||| Sbjct 14034 CCAAGTTGACGGACGAACAAGTCGTGAAGCGGCTGCTGCAGATTATCGAGGCGGAAAAGG 14093 Query 2019439 T 2019439 | Sbjct 14094 T 14094 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7916152258513515