Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20parareesei_20[genbank_20GCA_5F001050175.1_202015-07- 08] 885 sequences; 32,070,663 total letters Query= NC_024446.1 Length=306862 Score E Sequences producing significant alignments: (Bits) Value seq373 120 6e-22 >seq373 Length=44988 Score = 120 bits (132), Expect = 6e-22 Identities = 156/216 (72%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 82595 ACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACC 82654 ||| ||||| | ||||||||| || ||||| || || || || | | | ||| Sbjct 36816 ACGGAGAACCAGGTGCAGAGTGCTCTCCTTCTGGATGTTGTAGTCGCTCAAGGTACGACC 36757 Query 82655 GTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTT 82714 |||||| || || || ||||||||||| | | || || || || || || || ||||| Sbjct 36756 GTCTTCCAGCTGCTTACCAGCAAAGATCAAGCGCTGCTGGTCAGGCGGGATACCCTCCTT 36697 Query 82715 ATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTAT 82774 || |||||||| | || || || || || |||||| | ||| ||||||| ||| || Sbjct 36696 GTCCTGAATCTTCGACTTGACGTTGTCGATGGTATCAGATGATTCCACTTCCAGAGTAAT 36637 Query 82775 CGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 |||||| || |||| ||||| ||||| |||||||| Sbjct 36636 CGTCTTACCCGTCAGTGTCTTAACAAAGATCTGCAT 36601 Score = 105 bits (116), Expect = 1e-17 Identities = 154/218 (71%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 82596 CGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCG 82655 || ||||| | ||| || ||||| || ||||| || || || || || || ||| ||| Sbjct 36073 CGGAGAACCAGGTGGAGGGTAGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTTCGGCCG 36014 Query 82656 TCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTA 82715 || || || || || ||||||||||| || | || || || ||||| || || ||||| Sbjct 36013 TCCTCAAGCTGCTTGCCAGCAAAGATGAGACGCTGCTGGTCCGGAGGGATACCCTCCTTG 35954 Query 82716 TCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATC 82775 || || ||||| | || ||||| || || || || | || || || | || || Sbjct 35953 TCCTGGATCTTGGACTTCACATTGTCGATGGTGTCGGACGACTCGACCTCGAGGGTGATG 35894 Query 82776 GTCTTGCCTGTCAACGTCTTTACAAATATCTGCATTAT 82813 |||||||| || | ||||| || || |||||||| || Sbjct 35893 GTCTTGCCGGTGAGGGTCTTGACGAAGATCTGCATGAT 35856 Score = 104 bits (114), Expect = 5e-17 Identities = 153/217 (71%), Gaps = 0/217 (0%) Strand=Plus/Minus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 |||| || | | ||| || || | ||| || ||||| || ||||| || || || || | Sbjct 36373 TACCACCGCGAAGACGGAGGACAAGGTGGAGTGTAGACTCCTTCTGGATGTTGTAGTCGG 36314 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 | || ||| ||||| || || || || ||||||||||| || | || || || |||| Sbjct 36313 AGAGGGTTCGGCCGTCCTCAAGCTGCTTGCCAGCAAAGATGAGACGCTGCTGGTCCGGAG 36254 Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761 | || || ||||| || || ||||| | || || || || || || ||| | || | Sbjct 36253 GGATACCCTCCTTGTCCTGGATCTTGGACTTGACGTTGTCGATGGTGTCAGAGGACTCAA 36194 Query 82762 CTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTAC 82798 | || | ||| ||||||||||| |||| ||||| || Sbjct 36193 CCTCGAGAGTGATCGTCTTGCCGGTCAGGGTCTTGAC 36157 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 981816067000015