Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichoderma_20parareesei_20[genbank_20GCA_5F001050175.1_202015-07-
08] 885 sequences; 32,070,663 total letters
Query= NC_025960.1
Length=148981
Score E
Sequences producing significant alignments: (Bits) Value
seq804 109 5e-19
seq877 95.1 1e-14
>seq804
Length=175399
Score = 109 bits (120), Expect = 5e-19
Identities = 342/518 (66%), Gaps = 35/518 (7%)
Strand=Plus/Minus
Query 46761 CCATGCGTTCGCAAAAAGGCCCAGTGGGCCATGAAGTGGATCGAGAGCGAGACCGCCACG 46820
|| ||| ||||||| ||||| | ||||| || |||||| || | ||| | | |
Sbjct 35365 CCTTGCATTCGCAAGAAGGCTGACTGGGCGATTCGATGGATCCAGGACAAGAACTCGTCC 35306
Query 46821 CTGGCCGAGCGCATGGTGGCATTCGCGATAGTCGAAGGCGTGtttttttCGGGCAGT--- 46877
| ||| |||| | || || || || ||||| || | | || ||| | | ||
Sbjct 35305 TTTGCCCAGCGTCTCGTTGCCTTTGCCGCTGTCGAGGG--TATCTTCTTCAG-CGGTGCC 35249
Query 46878 TTTGCCGCCATTTTTTACATTAAAACCAAAGGCATAATGCCGGGCCTGACGTTCAGTAAC 46937
|||||| ||||||| | | || | ||| | ||||| |||||||| || |||
Sbjct 35248 TTTGCCTCCATTTTCTGGCTCAAGAAGCGAGGTCTCATGCCCGGCCTGACCTTTTCCAAC 35189
Query 46938 GAGTTGATCTCGCGCGACGAAGGACTACACACGGACTTTGCGTGTCT------CTATTAC 46991
||| | ||||| || ||||| || || |||||||||||||| || || || | ||
Sbjct 35188 GAGCTCATCTCTCGTGACGAGGGTCTGCACACGGACTTTGCCTGCCTGCTGCACTCTCAC 35129
Query 46992 ---AAGACGCGCGTGAATGAGAAATTAAACTCGGACACGATCC-TGAGCATGTTTAGGGA 47047
|||| |||| | | || ||| ||| | ||| ||| | | ||
Sbjct 35128 CTGAAGAACCGCGCCA----GCAA--------GGAGGTGATTCGTGA-CATCATCACCGA 35082
Query 47048 GGCGGTGAGCATCGAAAAGGAGTTTTTTACTGCGGCGCTGCCCGTCGCCTTGCTGGGCAT 47107
|| || ||||||| |||||||||| || | || ||||| |||| ||||||||||
Sbjct 35081 CGCCGTCCGCATCGAGCAGGAGTTTTTGACCGAAGCTCTGCCTTGCGCCCTGCTGGGCAT 35022
Query 47108 GAACGCACAGTCT-ATGTGCGAATATATTGAGTTTGTGGCGGATCGTCTGTTGGTGCAGC 47166
|||| | || || ||| | || ||||||||||| || || || ||| |||| |
Sbjct 35021 GAACTC-CAACCTCATGAAGCAGTACATTGAGTTTGTCGCCGACCGCCTGCTGGTAGCTC 34963
Query 47167 TCGGACAACCGAAATATTTTAATGCTCGT--AATCCGTTTGAGTTTATGAACAACATTTC 47224
|||| ||| ||| | | || |||| || || ||||| |||||| | ||||||||
Sbjct 34962 TCGG-CAA-CGAGAAGGTGTACAAGTCGTCCAACCCCTTTGACTTTATGGAGAACATTTC 34905
Query 47225 GCTCGAGGGCAAAACCAATTTTTTCGAGAAACGAGTCG 47262
|| | ||||| ||||| || || ||||| || ||||
Sbjct 34904 CCTGGGCGGCAAGACCAACTTCTTTGAGAAGCGCGTCG 34867
>seq877
Length=50207
Score = 95.1 bits (104), Expect = 1e-14
Identities = 154/222 (69%), Gaps = 0/222 (0%)
Strand=Plus/Minus
Query 131902 ACGCAAGCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGT 131961
||||| ||||| |||| || | | | ||| || || |||||||||||||||| |||
Sbjct 31695 ACGCAGGCGCAGGACCAGGTGGAGGGTGCTCTCCTTCTGGATGTTGTAGTCGCTCAGGGT 31636
Query 131962 ACGCGAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCC 132021
|| ||| |||||||| || |||| | |||| || ||||| || || || || |||||
Sbjct 31635 GCGGCCATCCTCGAGCTGCTTGCCGGCAAAGATCAGGCGCTGCTGGTCCGGGGGGATGCC 31576
Query 132022 TTCTTTATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGAC 132081
|| || || ||| || || | | || | || |||| | |||||| || |
Sbjct 31575 CTCCTTGTCCTGAATCTTGGACTTGACGTTGTCGATGGTGTCGGAAGACTCCACCTCAAG 31516
Query 132082 CGTCAGCGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123
|| | ||| || || || || || || | ||||||||||||
Sbjct 31515 GGTGATCGTCTTCCCCGTGAGGGTCTTGACGAAAATCTGCAT 31474
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 476605927488600
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |