Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20parareesei_20[genbank_20GCA_5F001050175.1_202015-07- 08] 885 sequences; 32,070,663 total letters Query= NC_025960.1 Length=148981 Score E Sequences producing significant alignments: (Bits) Value seq804 109 5e-19 seq877 95.1 1e-14 >seq804 Length=175399 Score = 109 bits (120), Expect = 5e-19 Identities = 342/518 (66%), Gaps = 35/518 (7%) Strand=Plus/Minus Query 46761 CCATGCGTTCGCAAAAAGGCCCAGTGGGCCATGAAGTGGATCGAGAGCGAGACCGCCACG 46820 || ||| ||||||| ||||| | ||||| || |||||| || | ||| | | | Sbjct 35365 CCTTGCATTCGCAAGAAGGCTGACTGGGCGATTCGATGGATCCAGGACAAGAACTCGTCC 35306 Query 46821 CTGGCCGAGCGCATGGTGGCATTCGCGATAGTCGAAGGCGTGtttttttCGGGCAGT--- 46877 | ||| |||| | || || || || ||||| || | | || ||| | | || Sbjct 35305 TTTGCCCAGCGTCTCGTTGCCTTTGCCGCTGTCGAGGG--TATCTTCTTCAG-CGGTGCC 35249 Query 46878 TTTGCCGCCATTTTTTACATTAAAACCAAAGGCATAATGCCGGGCCTGACGTTCAGTAAC 46937 |||||| ||||||| | | || | ||| | ||||| |||||||| || ||| Sbjct 35248 TTTGCCTCCATTTTCTGGCTCAAGAAGCGAGGTCTCATGCCCGGCCTGACCTTTTCCAAC 35189 Query 46938 GAGTTGATCTCGCGCGACGAAGGACTACACACGGACTTTGCGTGTCT------CTATTAC 46991 ||| | ||||| || ||||| || || |||||||||||||| || || || | || Sbjct 35188 GAGCTCATCTCTCGTGACGAGGGTCTGCACACGGACTTTGCCTGCCTGCTGCACTCTCAC 35129 Query 46992 ---AAGACGCGCGTGAATGAGAAATTAAACTCGGACACGATCC-TGAGCATGTTTAGGGA 47047 |||| |||| | | || ||| ||| | ||| ||| | | || Sbjct 35128 CTGAAGAACCGCGCCA----GCAA--------GGAGGTGATTCGTGA-CATCATCACCGA 35082 Query 47048 GGCGGTGAGCATCGAAAAGGAGTTTTTTACTGCGGCGCTGCCCGTCGCCTTGCTGGGCAT 47107 || || ||||||| |||||||||| || | || ||||| |||| |||||||||| Sbjct 35081 CGCCGTCCGCATCGAGCAGGAGTTTTTGACCGAAGCTCTGCCTTGCGCCCTGCTGGGCAT 35022 Query 47108 GAACGCACAGTCT-ATGTGCGAATATATTGAGTTTGTGGCGGATCGTCTGTTGGTGCAGC 47166 |||| | || || ||| | || ||||||||||| || || || ||| |||| | Sbjct 35021 GAACTC-CAACCTCATGAAGCAGTACATTGAGTTTGTCGCCGACCGCCTGCTGGTAGCTC 34963 Query 47167 TCGGACAACCGAAATATTTTAATGCTCGT--AATCCGTTTGAGTTTATGAACAACATTTC 47224 |||| ||| ||| | | || |||| || || ||||| |||||| | |||||||| Sbjct 34962 TCGG-CAA-CGAGAAGGTGTACAAGTCGTCCAACCCCTTTGACTTTATGGAGAACATTTC 34905 Query 47225 GCTCGAGGGCAAAACCAATTTTTTCGAGAAACGAGTCG 47262 || | ||||| ||||| || || ||||| || |||| Sbjct 34904 CCTGGGCGGCAAGACCAACTTCTTTGAGAAGCGCGTCG 34867 >seq877 Length=50207 Score = 95.1 bits (104), Expect = 1e-14 Identities = 154/222 (69%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 131902 ACGCAAGCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGT 131961 ||||| ||||| |||| || | | | ||| || || |||||||||||||||| ||| Sbjct 31695 ACGCAGGCGCAGGACCAGGTGGAGGGTGCTCTCCTTCTGGATGTTGTAGTCGCTCAGGGT 31636 Query 131962 ACGCGAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCC 132021 || ||| |||||||| || |||| | |||| || ||||| || || || || ||||| Sbjct 31635 GCGGCCATCCTCGAGCTGCTTGCCGGCAAAGATCAGGCGCTGCTGGTCCGGGGGGATGCC 31576 Query 132022 TTCTTTATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGAC 132081 || || || ||| || || | | || | || |||| | |||||| || | Sbjct 31575 CTCCTTGTCCTGAATCTTGGACTTGACGTTGTCGATGGTGTCGGAAGACTCCACCTCAAG 31516 Query 132082 CGTCAGCGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 || | ||| || || || || || || | |||||||||||| Sbjct 31515 GGTGATCGTCTTCCCCGTGAGGGTCTTGACGAAAATCTGCAT 31474 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476605927488600