Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichoderma_20parareesei_20[genbank_20GCA_5F001050175.1_202015-07-
08] 885 sequences; 32,070,663 total letters
Query= NC_026440.1
Length=2243109
Score E
Sequences producing significant alignments: (Bits) Value
seq804 248 1e-59
seq736 194 2e-43
seq162 113 6e-19
seq294 96.9 5e-14
>seq804
Length=175399
Score = 248 bits (274), Expect = 1e-59
Identities = 393/550 (71%), Gaps = 19/550 (3%)
Strand=Plus/Minus
Query 1455769 CCAGCGGATATGGGAAATGTACCAAAAAGGCCGAGGCCTCCTTTTGGACCGCCGAGGAGG 1455828
||| | ||| ||| |||||||| |||||||||||||| ||||| |||||||||||||||
Sbjct 35708 CCAACAGATCTGGCAAATGTAC-AAAAAGGCCGAGGCTTCCTTCTGGACCGCCGAGGAGA 35650
Query 1455829 TCGACCTCGGCGCCGACACGGTCCACTGG--GTGTCG-CTGAGCGACGACGAGCGCCATT 1455885
| ||||| | ||| | | ||||| || |||| ||| |||||| | |
Sbjct 35649 TTGACCTGTCCAAGGACCTGCACGACTGGAACAACCGCCTGAACGATGACGAGAAGTACT 35590
Query 1455886 TCATCAAGCACGTCCTCGCCTTTTTTCGCCGCCAGCGATGGCATCGTGGCCGAGAACCTG 1455945
||||| ||| |||| ||| || ||||||||| || ||||| || ||||||||||
Sbjct 35589 TCATCTCTCACATCCTGGCC-TTCTTCGCCGCCTCGGACGGCATTGTCAACGAGAACCTG 35531
Query 1455946 GCCGGCCGCTTTATGAAAGAGGTCCAATTGCCAGAGGCACGTTTGTTTTACGGGTTCCAG 1456005
| || ||||| | |||||||| | || ||||| || | |||||||| ||||||
Sbjct 35530 GTCGAGCGCTTCAGCGGCGAGGTCCAGATCCCCGAGGCTCGCTGCTTTTACGGCTTCCAG 35471
Query 1456006 ATCGCCATCGAAAACATCCACTCTGAAACCTACTCGCTCCTGATCGACACCTACGTCAAG 1456065
||| || || ||||||||||| || || ||||| || || |||||||| || |||||
Sbjct 35470 ATCATGATGGAGAACATCCACTCCGAGACGTACTCCCTGCTCATCGACACTTATATCAAG 35411
Query 1456066 GACCCGGTCGAGAAGGACCACCTCTTTCGCGCCATCGACACGGTGCCGTCGGTGAGGAAA 1456125
|| | | || || ||||||| |||||| || || | || | | | ||
Sbjct 35410 GAGCACAGCCAGCGCAACTACCTCTTCAACGCCATTGAGACCATTCCTTGCATTCGCAAG 35351
Query 1456126 AAGGCCGACTGGGCGATGAAGTGGATC---AACAAGGAGGGCCTCGACACTTTGCCGAGC 1456182
||||| ||||||||||| |||||| ||||| | |||| | ||||||| |||
Sbjct 35350 AAGGCTGACTGGGCGATTCGATGGATCCAGGACAAGAA----CTCGTC-CTTTGCCCAGC 35296
Query 1456183 GGCTCGTCGGCTTTGCCGC-GTCGAGGGCATCTTTTTC-TCGG-GCAGTTTCTGCGCCAT 1456239
| ||||| | ||||||||| |||||||| ||||| ||| ||| || || | | ||||
Sbjct 35295 GTCTCGTTGCCTTTGCCGCTGTCGAGGGTATCTTCTTCAGCGGTGCCTTTGC--CTCCAT 35238
Query 1456240 CTTTTGGCTCAAGAAGCGCGGCCTCATGCCCGGTCTTCTGCTTTAGCAACGAATTTATCA 1456299
|| |||||||||||||| || ||||||||||| | | |||| |||||| | |||
Sbjct 35237 TTTCTGGCTCAAGAAGCGAGGTCTCATGCCCGG-CCTGACCTTTTCCAACGAGCTCATCT 35179
Query 1456300 GTCGCGACGA 1456309
||| |||||
Sbjct 35178 CTCGTGACGA 35169
Score = 122 bits (134), Expect = 1e-21
Identities = 182/253 (72%), Gaps = 4/253 (2%)
Strand=Plus/Minus
Query 1456523 ATCATCGTCGAGGCCGTCGAGATCGAGAAAGAGTTTGTCAGCGAGTCGCTGCCGGTGGCG 1456582
|||||| ||| |||||| |||||| | |||||| | | ||| | ||||| ||
Sbjct 35092 ATCATCACCGACGCCGTCCGCATCGAGCAGGAGTTTTTGACCGAAGCTCTGCCTTGCGCC 35033
Query 1456583 CTCATCGGCATGAACGCCACCGCTCATGTGCCAGTACATTGAATTTTGTCGCCGACCGCC 1456642
|| | ||||||||| ||| | |||||| ||||||||||| ||| |||||||||||||
Sbjct 35032 CTGCTGGGCATGAACTCCAAC-CTCATGAAGCAGTACATTGAGTTT-GTCGCCGACCGCC 34975
Query 1456643 TGCTCGCGGCGCTCGGCTGCGGAGAAGCACTACCGGACGGCCAACCCGTTCCCATGGATG 1456702
|||| | || |||||| | |||||| ||| | || ||||||| || | |||
Sbjct 34974 TGCTGGTAGCTCTCGGCAAC-GAGAAGGTGTACAAGTCGTCCAACCCCTTTGACTTTATG 34916
Query 1456703 GAGTTGATCTCGCTCGAGGGCAAGACCAACTTTTTCGAGCGCCGCGT-GGCGAGTACGCC 1456761
||| || || || | |||||||||||||| || ||| ||||| | ||| |||
Sbjct 34915 GAGAACATTTCCCTGGGCGGCAAGACCAACTTCTTTGAGAAGCGCGTCGCCGACTACCAG 34856
Query 1456762 AAGGCCGGCGTCA 1456774
|||||||| ||||
Sbjct 34855 AAGGCCGGTGTCA 34843
>seq736
Length=134049
Score = 194 bits (214), Expect = 2e-43
Identities = 349/503 (69%), Gaps = 19/503 (4%)
Strand=Plus/Plus
Query 259682 CACAAGGAGGTCCTCGACGCTGCCATCTGCCACGGCCGAGACTTTGGCTACTCGTACTTT 259741
|||||||||| |||||| | |||||| | ||| ||||||||| |||| ||||||
Sbjct 46488 CACAAGGAGGAGCTCGACTCCGCCATCGTCTACGACCGAGACTTCAACTACCAATACTTT 46547
Query 259742 GGTCTGGCGACCTTGCGCCGGTCCTACCTGACCAAAGTGCG-CGATATTGTCGTCGAGCG 259800
|| | ||| || || || ||||| | ||| || || | | ||||||||
Sbjct 46548 GGCTTCAAGACGCTGGAGCGATCATACCTT-CTGAAGCTCGACGGCAAGATTGTCGAGCG 46606
Query 259801 GCCCCAGTATATGCTCATGCGTGTCGCCCTTGGCCATTATGGGTTTGCCGACGTCGACAA 259860
||| || | ||| | ||||| || ||| ||||| | |||| || | |||||
Sbjct 46607 GCCACAACACATGATTATGCGAGTGGCCGTTGGCA--TCTGGG------GA-GACGACAT 46657
Query 259861 TGCGCTGGAGCACGTGCTCGCCACCTACGAGGCCATGTCGCAGCA-GTTGTTCACCTCAG 259919
|| ||| || |||| || ||| | |||||| ||||| ||| |||||| |
Sbjct 46658 TG------AGCGTGTCCTCGAGACATACCACCTCATGTC-CAGCAAGTTCTTCACCCACG 46710
Query 259920 CGACGCCCACGCTCTTTAATGCCGGCACGCCGCGCCCGCAGAATTCGTCGTGCTTTCTGT 259979
| | || || ||||| ||||| ||||| |||| | ||| || || ||||| |||
Sbjct 46711 CCTCCCCTACCCTCTTCAATGCTGGCACCCCGCAAGCCCAGCTGTCCTCATGCTTCCTGG 46770
Query 259980 TGGACATGAAGGCCGATTCGATCGAGGGCATCTATGACACGCTCAAGCAGTGCGCGCTCA 260039
|||||||||||| ||| || ||||| ||||||||||| || ||| ||| || | |
Sbjct 46771 TGGACATGAAGGACGACAGCATTGAGGGTATCTATGACACCCTGAAGACGTGTGCCATGA 46830
Query 260040 TCTCCAAGGCGGCCGGCGGCATCGGTTTTGCCGCACACAAGGTGCGCGCCGCGGGCGCCT 260099
| |||||| ||| || ||||||||| | || ||| | || ||| | ||| |||
Sbjct 46831 TTTCCAAGATGGCTGGTGGCATCGGTCTGAACGTCCACCGCATCCGTGCCACTGGCTCCT 46890
Query 260100 ACGTGGCGGGCACCAACGGCCAGTCCAACGGCCTTGTGCCCATGCTTCGCGTTTTTAACG 260159
|| | || |||||||||||| ||||||||| || | |||||||| || || || |||
Sbjct 46891 ACATCGCCGGCACCAACGGCACCTCCAACGGCATTATCCCCATGCTGCGAGTCTTCAACA 46950
Query 260160 ACACGGCGCGCTACGTCGACCAG 260182
|||| || || ||||||||||||
Sbjct 46951 ACACTGCCCGATACGTCGACCAG 46973
>seq162
Length=159780
Score = 113 bits (124), Expect = 6e-19
Identities = 226/330 (68%), Gaps = 4/330 (1%)
Strand=Plus/Plus
Query 2133386 GCGCATGGCCGACGCCACGAGGACCATGCTGGTCTGCCTGGGCGAGGATGTGACGCGCGA 2133445
||||||| | |||| | ||| |||| | ||| ||||||||||| | || ||
Sbjct 54862 GCGCATGAAGGGCGCCGTCAAGACGCTGCTCGAGTGCGTGGGCGAGGATCCTGCCCGAGA 54921
Query 2133446 GGGCCTCCTGGACACACCCATGCGCGTGGCCAAGGCCATGGTGGAGCGCACGCGCGGCCA 2133505
|||||| ||| ||| ||| |||| |||||||||||| || ||||| ||| |
Sbjct 54922 GGGCCTGTTGGCCACGCCCGAGCGCTATGCCAAGGCCATGATGACCTTCACGCAGGGCTA 54981
Query 2133506 TC-GCATGACCCTGGCCGACGCCGTCGGCGGCGCCCTCTTTGACGAGGCGTCGGAC-GAG 2133563
||| || | | |||| |||| ||||||| ||||| | |||| | | | |||
Sbjct 54982 CGAGCA-GAACGTCTTCGACATCGTCAACGGCGCCATCTTTCAGGAGG-GCCACTCTGAG 55039
Query 2133564 ATGGTGACGGTGCGCGATATTGACTTTTTCTCCATGTGCGAGCACCACCTGCTGCCCTTT 2133623
||||| || | || ||| | |||||| | ||||||||||||||| |||||||
Sbjct 55040 ATGGTTGTCGTCAAGAACATCGACATCTTCTCCCTCTGCGAGCACCACCTGGTGCCCTTC 55099
Query 2133624 ATCGGCAAGGCCCACGTGGGCTACCTGCCCGCGGGCAAGATCATCGGTCTGAGCAAGATC 2133683
| |||||||| ||| | |||||| | ||| | ||||||| | |||| |
Sbjct 55100 ACCGGCAAGGTGCACATCGGCTACATCCCCAACAACGCCGTCATCGGCATCTCCAAGCTG 55159
Query 2133684 CCGCGCATCGTCGACATGTTTTCCGACCGC 2133713
|||||||||| ||||||||| ||| ||||
Sbjct 55160 CCGCGCATCGCCGACATGTTCTCCCGCCGC 55189
>seq294
Length=36417
Score = 96.9 bits (106), Expect = 5e-14
Identities = 316/474 (67%), Gaps = 38/474 (8%)
Strand=Plus/Minus
Query 165444 CTGTTGGTCGTCGTCGGTCCGTGTTCGGCACACGACCCGGACGCCGTTGTCGAGTATGGT 165503
|| || ||||||||||| || || || |||||||| || |||| |||||| |
Sbjct 22878 CTATTAGTCGTCGTCGGCCCCTGCTCCATCCACGACCCCGAAGCCGCCCACGAGTACGC- 22820
Query 165504 CGGCGG--TTGCGC-GCCCTCGTACGGGCCGAGGTCGACGACGCCCTTTGTGTGGTCATG 165560
|| | | || || || ||| || | || ||| ||||| ||| || | || |||
Sbjct 22819 CGCCCGCCTTAAGCAGCTCTC---CGAGA--AGCTCGCCGACGACCTCTGCATCGTGATG 22765
Query 165561 CGCGCCTATGTCGAAAAGCCGCGCACGACCGTTGGATGGAAGGGCCTGGCCAGTGACCCC 165620
|||||||| | || ||||| ||||||||||| || |||||||||||| || || |||
Sbjct 22764 CGCGCCTACCTGGAGAAGCCTCGCACGACCGTCGGCTGGAAGGGCCTGATCAACGATCCC 22705
Query 165621 GATCTTGATGGCTCGTGCCGCCTGGCTGAT-------GGCCTTGATACATCGCGCCGCCT 165673
||| | || ||||| ||| | ||| ||||| | || ||||| ||
Sbjct 22704 GATATCGA---CTCGT----CCTTCCAGATCAACAAGGGCCTGCGTGTCTCCCGCCGGCT 22652
Query 165674 GCTGCGT-GATCTCGTCGTCGACGTCGACCAACCCGTGGCCGTCGAGTTTCTC-AGTCC- 165730
|| ||| || || | | || | || | ||| | ||| |||| | ||| | ||
Sbjct 22651 -CTTCGTCGACCT-GACCTCCAA--CGGCATGCCCATTGCCACCGAGATGCTCGACACCA 22596
Query 165731 TCTGGTGGCCCCCTATT--TGGCAGACCTGGTCACGTGGGGCGCCGTCGGTGCGCGCACC 165788
||| ||||| || | || ||| || | |||||| | || ||||| ||
Sbjct 22595 TCTC----CCCCCAGTTCCTCGCCGACTGCATCTCCGTCGGCGCCATTGGCGCGCGAACG 22540
Query 165789 ACCGAGAGCCAGGTGCACCGCGAGATGGCGTCGGCGCTGCCGCTGCCCATTGGCTTCAAA 165848
|||||| |||| ||||||| ||| | || || | ||| | | ||| | ||||||||
Sbjct 22539 ACCGAGTCCCAGCTGCACCGTGAGCTCGCTTCCGGCCTGTCCTTCCCCGTGGGCTTCAAG 22480
Query 165849 AACAGCACCGACGGCAGCGT-GGCGACGGCCCTCGATGCCGTGCGCACTGCCGC 165901
||| | |||||||||||| | |||| | ||| |||||||| | || |||||||
Sbjct 22479 AACGGAACCGACGGCAGCCTCGGCGTC-GCCATCGATGCCATTGGCGCTGCCGC 22427
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 7177725840123370
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