Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20parareesei_20[genbank_20GCA_5F001050175.1_202015-07- 08] 885 sequences; 32,070,663 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq804 248 1e-59 seq736 194 2e-43 seq162 113 6e-19 seq294 96.9 5e-14 >seq804 Length=175399 Score = 248 bits (274), Expect = 1e-59 Identities = 393/550 (71%), Gaps = 19/550 (3%) Strand=Plus/Minus Query 1455769 CCAGCGGATATGGGAAATGTACCAAAAAGGCCGAGGCCTCCTTTTGGACCGCCGAGGAGG 1455828 ||| | ||| ||| |||||||| |||||||||||||| ||||| ||||||||||||||| Sbjct 35708 CCAACAGATCTGGCAAATGTAC-AAAAAGGCCGAGGCTTCCTTCTGGACCGCCGAGGAGA 35650 Query 1455829 TCGACCTCGGCGCCGACACGGTCCACTGG--GTGTCG-CTGAGCGACGACGAGCGCCATT 1455885 | ||||| | ||| | | ||||| || |||| ||| |||||| | | Sbjct 35649 TTGACCTGTCCAAGGACCTGCACGACTGGAACAACCGCCTGAACGATGACGAGAAGTACT 35590 Query 1455886 TCATCAAGCACGTCCTCGCCTTTTTTCGCCGCCAGCGATGGCATCGTGGCCGAGAACCTG 1455945 ||||| ||| |||| ||| || ||||||||| || ||||| || |||||||||| Sbjct 35589 TCATCTCTCACATCCTGGCC-TTCTTCGCCGCCTCGGACGGCATTGTCAACGAGAACCTG 35531 Query 1455946 GCCGGCCGCTTTATGAAAGAGGTCCAATTGCCAGAGGCACGTTTGTTTTACGGGTTCCAG 1456005 | || ||||| | |||||||| | || ||||| || | |||||||| |||||| Sbjct 35530 GTCGAGCGCTTCAGCGGCGAGGTCCAGATCCCCGAGGCTCGCTGCTTTTACGGCTTCCAG 35471 Query 1456006 ATCGCCATCGAAAACATCCACTCTGAAACCTACTCGCTCCTGATCGACACCTACGTCAAG 1456065 ||| || || ||||||||||| || || ||||| || || |||||||| || ||||| Sbjct 35470 ATCATGATGGAGAACATCCACTCCGAGACGTACTCCCTGCTCATCGACACTTATATCAAG 35411 Query 1456066 GACCCGGTCGAGAAGGACCACCTCTTTCGCGCCATCGACACGGTGCCGTCGGTGAGGAAA 1456125 || | | || || ||||||| |||||| || || | || | | | || Sbjct 35410 GAGCACAGCCAGCGCAACTACCTCTTCAACGCCATTGAGACCATTCCTTGCATTCGCAAG 35351 Query 1456126 AAGGCCGACTGGGCGATGAAGTGGATC---AACAAGGAGGGCCTCGACACTTTGCCGAGC 1456182 ||||| ||||||||||| |||||| ||||| | |||| | ||||||| ||| Sbjct 35350 AAGGCTGACTGGGCGATTCGATGGATCCAGGACAAGAA----CTCGTC-CTTTGCCCAGC 35296 Query 1456183 GGCTCGTCGGCTTTGCCGC-GTCGAGGGCATCTTTTTC-TCGG-GCAGTTTCTGCGCCAT 1456239 | ||||| | ||||||||| |||||||| ||||| ||| ||| || || | | |||| Sbjct 35295 GTCTCGTTGCCTTTGCCGCTGTCGAGGGTATCTTCTTCAGCGGTGCCTTTGC--CTCCAT 35238 Query 1456240 CTTTTGGCTCAAGAAGCGCGGCCTCATGCCCGGTCTTCTGCTTTAGCAACGAATTTATCA 1456299 || |||||||||||||| || ||||||||||| | | |||| |||||| | ||| Sbjct 35237 TTTCTGGCTCAAGAAGCGAGGTCTCATGCCCGG-CCTGACCTTTTCCAACGAGCTCATCT 35179 Query 1456300 GTCGCGACGA 1456309 ||| ||||| Sbjct 35178 CTCGTGACGA 35169 Score = 122 bits (134), Expect = 1e-21 Identities = 182/253 (72%), Gaps = 4/253 (2%) Strand=Plus/Minus Query 1456523 ATCATCGTCGAGGCCGTCGAGATCGAGAAAGAGTTTGTCAGCGAGTCGCTGCCGGTGGCG 1456582 |||||| ||| |||||| |||||| | |||||| | | ||| | ||||| || Sbjct 35092 ATCATCACCGACGCCGTCCGCATCGAGCAGGAGTTTTTGACCGAAGCTCTGCCTTGCGCC 35033 Query 1456583 CTCATCGGCATGAACGCCACCGCTCATGTGCCAGTACATTGAATTTTGTCGCCGACCGCC 1456642 || | ||||||||| ||| | |||||| ||||||||||| ||| ||||||||||||| Sbjct 35032 CTGCTGGGCATGAACTCCAAC-CTCATGAAGCAGTACATTGAGTTT-GTCGCCGACCGCC 34975 Query 1456643 TGCTCGCGGCGCTCGGCTGCGGAGAAGCACTACCGGACGGCCAACCCGTTCCCATGGATG 1456702 |||| | || |||||| | |||||| ||| | || ||||||| || | ||| Sbjct 34974 TGCTGGTAGCTCTCGGCAAC-GAGAAGGTGTACAAGTCGTCCAACCCCTTTGACTTTATG 34916 Query 1456703 GAGTTGATCTCGCTCGAGGGCAAGACCAACTTTTTCGAGCGCCGCGT-GGCGAGTACGCC 1456761 ||| || || || | |||||||||||||| || ||| ||||| | ||| ||| Sbjct 34915 GAGAACATTTCCCTGGGCGGCAAGACCAACTTCTTTGAGAAGCGCGTCGCCGACTACCAG 34856 Query 1456762 AAGGCCGGCGTCA 1456774 |||||||| |||| Sbjct 34855 AAGGCCGGTGTCA 34843 >seq736 Length=134049 Score = 194 bits (214), Expect = 2e-43 Identities = 349/503 (69%), Gaps = 19/503 (4%) Strand=Plus/Plus Query 259682 CACAAGGAGGTCCTCGACGCTGCCATCTGCCACGGCCGAGACTTTGGCTACTCGTACTTT 259741 |||||||||| |||||| | |||||| | ||| ||||||||| |||| |||||| Sbjct 46488 CACAAGGAGGAGCTCGACTCCGCCATCGTCTACGACCGAGACTTCAACTACCAATACTTT 46547 Query 259742 GGTCTGGCGACCTTGCGCCGGTCCTACCTGACCAAAGTGCG-CGATATTGTCGTCGAGCG 259800 || | ||| || || || ||||| | ||| || || | | |||||||| Sbjct 46548 GGCTTCAAGACGCTGGAGCGATCATACCTT-CTGAAGCTCGACGGCAAGATTGTCGAGCG 46606 Query 259801 GCCCCAGTATATGCTCATGCGTGTCGCCCTTGGCCATTATGGGTTTGCCGACGTCGACAA 259860 ||| || | ||| | ||||| || ||| ||||| | |||| || | ||||| Sbjct 46607 GCCACAACACATGATTATGCGAGTGGCCGTTGGCA--TCTGGG------GA-GACGACAT 46657 Query 259861 TGCGCTGGAGCACGTGCTCGCCACCTACGAGGCCATGTCGCAGCA-GTTGTTCACCTCAG 259919 || ||| || |||| || ||| | |||||| ||||| ||| |||||| | Sbjct 46658 TG------AGCGTGTCCTCGAGACATACCACCTCATGTC-CAGCAAGTTCTTCACCCACG 46710 Query 259920 CGACGCCCACGCTCTTTAATGCCGGCACGCCGCGCCCGCAGAATTCGTCGTGCTTTCTGT 259979 | | || || ||||| ||||| ||||| |||| | ||| || || ||||| ||| Sbjct 46711 CCTCCCCTACCCTCTTCAATGCTGGCACCCCGCAAGCCCAGCTGTCCTCATGCTTCCTGG 46770 Query 259980 TGGACATGAAGGCCGATTCGATCGAGGGCATCTATGACACGCTCAAGCAGTGCGCGCTCA 260039 |||||||||||| ||| || ||||| ||||||||||| || ||| ||| || | | Sbjct 46771 TGGACATGAAGGACGACAGCATTGAGGGTATCTATGACACCCTGAAGACGTGTGCCATGA 46830 Query 260040 TCTCCAAGGCGGCCGGCGGCATCGGTTTTGCCGCACACAAGGTGCGCGCCGCGGGCGCCT 260099 | |||||| ||| || ||||||||| | || ||| | || ||| | ||| ||| Sbjct 46831 TTTCCAAGATGGCTGGTGGCATCGGTCTGAACGTCCACCGCATCCGTGCCACTGGCTCCT 46890 Query 260100 ACGTGGCGGGCACCAACGGCCAGTCCAACGGCCTTGTGCCCATGCTTCGCGTTTTTAACG 260159 || | || |||||||||||| ||||||||| || | |||||||| || || || ||| Sbjct 46891 ACATCGCCGGCACCAACGGCACCTCCAACGGCATTATCCCCATGCTGCGAGTCTTCAACA 46950 Query 260160 ACACGGCGCGCTACGTCGACCAG 260182 |||| || || |||||||||||| Sbjct 46951 ACACTGCCCGATACGTCGACCAG 46973 >seq162 Length=159780 Score = 113 bits (124), Expect = 6e-19 Identities = 226/330 (68%), Gaps = 4/330 (1%) Strand=Plus/Plus Query 2133386 GCGCATGGCCGACGCCACGAGGACCATGCTGGTCTGCCTGGGCGAGGATGTGACGCGCGA 2133445 ||||||| | |||| | ||| |||| | ||| ||||||||||| | || || Sbjct 54862 GCGCATGAAGGGCGCCGTCAAGACGCTGCTCGAGTGCGTGGGCGAGGATCCTGCCCGAGA 54921 Query 2133446 GGGCCTCCTGGACACACCCATGCGCGTGGCCAAGGCCATGGTGGAGCGCACGCGCGGCCA 2133505 |||||| ||| ||| ||| |||| |||||||||||| || ||||| ||| | Sbjct 54922 GGGCCTGTTGGCCACGCCCGAGCGCTATGCCAAGGCCATGATGACCTTCACGCAGGGCTA 54981 Query 2133506 TC-GCATGACCCTGGCCGACGCCGTCGGCGGCGCCCTCTTTGACGAGGCGTCGGAC-GAG 2133563 ||| || | | |||| |||| ||||||| ||||| | |||| | | | ||| Sbjct 54982 CGAGCA-GAACGTCTTCGACATCGTCAACGGCGCCATCTTTCAGGAGG-GCCACTCTGAG 55039 Query 2133564 ATGGTGACGGTGCGCGATATTGACTTTTTCTCCATGTGCGAGCACCACCTGCTGCCCTTT 2133623 ||||| || | || ||| | |||||| | ||||||||||||||| ||||||| Sbjct 55040 ATGGTTGTCGTCAAGAACATCGACATCTTCTCCCTCTGCGAGCACCACCTGGTGCCCTTC 55099 Query 2133624 ATCGGCAAGGCCCACGTGGGCTACCTGCCCGCGGGCAAGATCATCGGTCTGAGCAAGATC 2133683 | |||||||| ||| | |||||| | ||| | ||||||| | |||| | Sbjct 55100 ACCGGCAAGGTGCACATCGGCTACATCCCCAACAACGCCGTCATCGGCATCTCCAAGCTG 55159 Query 2133684 CCGCGCATCGTCGACATGTTTTCCGACCGC 2133713 |||||||||| ||||||||| ||| |||| Sbjct 55160 CCGCGCATCGCCGACATGTTCTCCCGCCGC 55189 >seq294 Length=36417 Score = 96.9 bits (106), Expect = 5e-14 Identities = 316/474 (67%), Gaps = 38/474 (8%) Strand=Plus/Minus Query 165444 CTGTTGGTCGTCGTCGGTCCGTGTTCGGCACACGACCCGGACGCCGTTGTCGAGTATGGT 165503 || || ||||||||||| || || || |||||||| || |||| |||||| | Sbjct 22878 CTATTAGTCGTCGTCGGCCCCTGCTCCATCCACGACCCCGAAGCCGCCCACGAGTACGC- 22820 Query 165504 CGGCGG--TTGCGC-GCCCTCGTACGGGCCGAGGTCGACGACGCCCTTTGTGTGGTCATG 165560 || | | || || || ||| || | || ||| ||||| ||| || | || ||| Sbjct 22819 CGCCCGCCTTAAGCAGCTCTC---CGAGA--AGCTCGCCGACGACCTCTGCATCGTGATG 22765 Query 165561 CGCGCCTATGTCGAAAAGCCGCGCACGACCGTTGGATGGAAGGGCCTGGCCAGTGACCCC 165620 |||||||| | || ||||| ||||||||||| || |||||||||||| || || ||| Sbjct 22764 CGCGCCTACCTGGAGAAGCCTCGCACGACCGTCGGCTGGAAGGGCCTGATCAACGATCCC 22705 Query 165621 GATCTTGATGGCTCGTGCCGCCTGGCTGAT-------GGCCTTGATACATCGCGCCGCCT 165673 ||| | || ||||| ||| | ||| ||||| | || ||||| || Sbjct 22704 GATATCGA---CTCGT----CCTTCCAGATCAACAAGGGCCTGCGTGTCTCCCGCCGGCT 22652 Query 165674 GCTGCGT-GATCTCGTCGTCGACGTCGACCAACCCGTGGCCGTCGAGTTTCTC-AGTCC- 165730 || ||| || || | | || | || | ||| | ||| |||| | ||| | || Sbjct 22651 -CTTCGTCGACCT-GACCTCCAA--CGGCATGCCCATTGCCACCGAGATGCTCGACACCA 22596 Query 165731 TCTGGTGGCCCCCTATT--TGGCAGACCTGGTCACGTGGGGCGCCGTCGGTGCGCGCACC 165788 ||| ||||| || | || ||| || | |||||| | || ||||| || Sbjct 22595 TCTC----CCCCCAGTTCCTCGCCGACTGCATCTCCGTCGGCGCCATTGGCGCGCGAACG 22540 Query 165789 ACCGAGAGCCAGGTGCACCGCGAGATGGCGTCGGCGCTGCCGCTGCCCATTGGCTTCAAA 165848 |||||| |||| ||||||| ||| | || || | ||| | | ||| | |||||||| Sbjct 22539 ACCGAGTCCCAGCTGCACCGTGAGCTCGCTTCCGGCCTGTCCTTCCCCGTGGGCTTCAAG 22480 Query 165849 AACAGCACCGACGGCAGCGT-GGCGACGGCCCTCGATGCCGTGCGCACTGCCGC 165901 ||| | |||||||||||| | |||| | ||| |||||||| | || ||||||| Sbjct 22479 AACGGAACCGACGGCAGCCTCGGCGTC-GCCATCGATGCCATTGGCGCTGCCGC 22427 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7177725840123370