Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20parareesei_20[genbank_20GCA_5F001050175.1_202015-07- 08] 885 sequences; 32,070,663 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq736 219 5e-52 seq804 98.7 1e-15 seq710 96.9 4e-15 >seq736 Length=134049 Score = 219 bits (242), Expect = 5e-52 Identities = 1156/1815 (64%), Gaps = 53/1815 (3%) Strand=Plus/Minus Query 110363 CGGAGATAGTACATCCCGGTCTTGAGTCCTTGTTTCCATGCGTACATATGCATAGAAGAG 110422 ||||| |||||||| ||||||||||| || | ||||| || | ||||| | | Sbjct 48331 CGGAGGTAGTACATGCCGGTCTTGAGACCGAGCTTCCAGCCGGTGAAGTGCATGCTGGTG 48272 Query 110423 AGCTTGGACATCGTTGGACTTTCCATGAAGAGGTTCAT--ACTTTGACTTTGGTCAATGA 110480 | |||| |||||| || | |||| || ||| | ||| |||| |||| |||| Sbjct 48271 ATCTTGCCCATCGTGGGGTCCTTCATGTGGATGTTTAGGGACTGGGACT--GGTCGATGA 48214 Query 110481 AGCGCCCCCGTTGTGCCGCCATATCAATGACAT--CCTTCATCTTAATTTCCCAAACTGT 110538 | || || | |||||||| | | || | | | | | || ||||| || || Sbjct 48213 AAGCACCACGATCAGCCGCCATCTGGACGATTTGACGCTGAGAT--ATCTCCCAGACGGT 48156 Query 110539 GCGATAGAGATTCTTGATATCATCTGGGATATCTGAGATATTCTGGATGGAACCCCCCGC 110598 || || |||||| || || ||||| | | || ||||||||||| || | | Sbjct 48155 CTTGTACAGGGCCTTGATGTCCTCGGGGATGTTGGGAATGTTCTGGATGGAGCCGTTCTC 48096 Query 110599 CTTCACCATGAGATCCTTCATATCCTTGGACCAGAGACCAATCTTCTTGAGGTCATTGAC 110658 | ||| | | |||||| | | ||||| || || | | ||||| |||| Sbjct 48095 GGCAATGATGCGGTTCTTCATGGCGTCAGACCACAGGCCGGTGTCGACCAGGTCCTTGAG 48036 Query 110659 GAGGTGCTTGTTGACAATGACAAACTCACCTGCGAGGGTTCTTCTCAGGTAGATGTTTGT 110718 || |||||||| |||||||| || ||| | || | |||||||||| | Sbjct 48035 AAGCCAAGGGTTGACAACCTGGAACTCACCAGCAAGGACACGTCGCTGGTAGATGTTGGA 47976 Query 110719 TGTGTATGGTTCAAAGCATTCATTATTACCCAAGATTTGTGCGGTGGAGGCTGTTGGCAT 110778 ||||| || || |||||||| || || |||| || || | ||| ||| || ||||| Sbjct 47975 GGTGTAGGGCTCGAAGCATTCGTTGTTGCCCAGAATCTGAGAGGTACTGGCAGTGGGCAT 47916 Query 110779 TGGTGCCATCAAAAGACTGTTACGAAGACCCTTCTCCTTGATGCGTTCCTTGAGAACATC 110838 || || | | | ||||| || | ||| | ||||||||| | |||||||| || Sbjct 47915 AGGAGCGACGAGCAAGCTGTTGCGGACACCGTGCTCCTTGATCTGCTCCTTGAGGGAGTC 47856 Query 110839 CCAGTCGTA---GTTG-AGCTTGGTTTCACCTTCCCACATGTCAAACTGAAGCACCCCTT 110894 ||| || | || | || || || || | |||||||||| |||| || | || | Sbjct 47855 CCACTCCCACAGGTCGGAG---GGCTTGACGT-CCCACATGTCGTACTGGAGGATACCCT 47800 Query 110895 GGGACGCGGGAGAACCCTCAAAGGTTTCATAGGAACCTTGGGCTTCAGCCAATTCACAGC 110954 || || || || |||| || | |||||||| || | | | | || | || | Sbjct 47799 CAGATGCAGGCGATCCCTTGAACGATTCATAGGGGCCCTCGACCTTGGCAATCTCCATGG 47740 Query 110955 TCGCCTCCAGGGATGCGTGATACATGGTTTCAAAGATACGAGCATTCATCTCCTTGGCTT 111014 || || |||| || || || ||||| || ||||| | |||| ||| || | Sbjct 47739 AAGCTTCAAGGGCGGCATGGTAAATGGTCTCGAAGATCTGCTTGTTCAGCTCGCGAGCCT 47680 Query 111015 CATCTGAATCAAATGCGTAGCGGCACAAA-ATAAATACATCCGCGAGACCTTGAACACCC 111073 | || ||||| | | || ||| | | || | || || ||||| || ||||| Sbjct 47679 CGGGAGACTCAAAGG-GCAGACGCAGAGCGAGGAACGCGTCAGCAAGACCCTGGACACCG 47621 Query 111074 AAACCAATAGGTCTGTGTCGCATATTAGACTTTCGCGCAGTCTCAACGGGATAAAAATTT 111133 | ||| ||||||| ||| ||||| || || || || ||| ||||| || || Sbjct 47620 ACACCGATAGGTCGGTGGCGCATGTTGCTGTTGCGAGCCTCCTCGACGGGGTAGTGGTTC 47561 Query 111134 CTGTCAATGACTCGGTTTAGATTTTTGGTAACAATCTTTGTGATTTCATGAAGTTTTTCA 111193 || |||| ||||| || || | || | ||| |||| ||| ||||| || | Sbjct 47560 ACATCGATGATGCGGTTGAGGTTGCGGACGACCACCTTGGTGACTTCGTGAAGCTTCTTG 47501 Query 111194 TAATCAAAAGTGCGAGTCTCTTCATTGACATACTTTGGAAGGGCGATTGATGCCAAATTG 111253 | || | || | | | |||| | |||||||| | || ||||| ||| Sbjct 47500 AAGTCGTAGCAGCCCTCGTTGTAGTCGACAAAGGCGGGAAGGGCCAGAGAGGCCAAGTTG 47441 Query 111254 CAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAAATTTCTGTACATAAGTTGGAACTC 111313 || ||||| ||| || | |||||| | || || || || | ||| || || Sbjct 47440 CAGACAGCGACCTCGTCGGGGGCACAGTACTCAATGATCTCAGTGCAGAGGTTAGAGCTG 47381 Query 111314 TTAATCGTCCCCAAATTCTTTTGGTTACTCTTCTTGTTGCACGCATCCTTGTAGAGCATG 111373 || || ||||| ||||| ||||| ||||| |||||| |||||||| |||||| Sbjct 47380 CGGATGGTGCCCAAGTTCTTCTGGTTGCTCTTGCGGTTGCAGTGGTCCTTGTAAAGCATG 47321 Query 111374 TAGGGCGTCCCCGTCTCCGTCTGTGATTTGAGAATAGCCTTCCAAA-CATCGGCGGCTGG 111432 |||| | || ||||| ||||| | | || || | | ||| | | || | | || Sbjct 47320 AAGGGGTTACCAGTCTCGGTCTGGGCCTCCAGGATGGAGTACCACAGCTTCTGAGCACGG 47261 Query 111433 TACAATGGCGTT--GGCC-CGTCCCTCCGCCTCGTACTTTGTGTAGAGGGCTTCAAACTC 111489 |||| || | || ||||||||| |||||||||| ||| || || |||||||| Sbjct 47260 ----ATGGTCTTACGACCACGTCCCTCCCTCTCGTACTTTTCGTACAGAGCCTCAAACTC 47205 Query 111490 CTCACCCACCGCGTCGGAGAGACCTGGTGCCTT-GTCTGGACAGAAAAGAGACCATTGAC 111548 ||| || ||| | ||||| || || || || || || | || | ||| | | Sbjct 47204 CTCGCCGTAGCAGTCAGCAAGACCAGG-GCATTCGTTGGGGCACATGAGCGTCCAGT--C 47148 Query 111549 CACCTTC--CTCAACCCGCTTCATGAAAAGGTCTGGAATCCACAGGG-ATGAAAAGAGAT 111605 || ||| ||| || ||||||||||| || || || |||||||| | | | || || | Sbjct 47147 CAAGTTCTTCTCGACACGCTTCATGAAGAGATCGGGGATCCACAGAGCAAGGAACAAG-T 47089 Query 111606 CTCTACACCGAGCCTCTTCGTCACCTTGGTTGAGTCGTAACTCAAGGAACTCCATGATAT 111665 | | ||| |||| || | || ||||| || | |||||||| || | || | Sbjct 47088 CGCGGGCGCGAACCTCCTCCTTGCCGTGGTTCTTGCGGAGATCAAGGAAGTCAAAGACGT 47029 Query 111666 CCGCGTGCCATGGCTCAAGATAGACTGCGATAGATCCCTTTCGACGC------CCAGCTT 111719 | |||||||| ||||| || |||| || | | || ||||| ||| | | Sbjct 47028 CGGCGTGCCAGGGCTCGAGGTAGATGGCAAAGGCACCAG---GACGCTTGTTGCCACCCT 46972 Query 111720 GATTTACATAGCGCGCTGTGGCGTTAAATACGCGAAGCATTGGAATAATACCATCTGATT 111779 | | || || || || ||| ||| || || || ||||| || ||||| || | || Sbjct 46971 GGTCGACGTATCGGGCAGTGTTGTTGAAGACTCGCAGCATGGGGATAATGCCGTTGGAGG 46912 Query 111780 GACCATTTGTCCCC-CGAA-TACGAGATTTATTGGCTCTCACATCATGGATGTGCATCCC 111837 || || || || ||| || ||| | |||| | | |||| || || || Sbjct 46911 TGCCGTTGGTGCCGGCGATGTAGGAGCC--AGTGGCACGGATGCGGTGGACGTTCAGACC 46854 Query 111838 AATACCCCCAGCCCACTTTGAGATTTGCGCACACTCCGTAAGAGTTCCATAGATACCGTT 111897 || || |||||| ||| || || |||||| | | || || |||||||||| | Sbjct 46853 GATGCCACCAGCCATCTTGGAAATCATGGCACACGTCTTCAGGGTGTCATAGATACCCTC 46794 Query 111898 GATTGAGTCCTCCTTGTTGGCGATAAGGAAGCAACTGGACATCTGCGGTCTTGGTGTACC 111957 || ||| ||||| || | | |||||||| ||||| ||| | | || || || Sbjct 46793 AATGCTGTCGTCCTTCATGTCCACCAGGAAGCATGAGGACAGCTGGGCTTGCGGGGTGCC 46734 Query 111958 AGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATACCTTG--GGACATCTTGTCGTAT 112015 ||||||||||||||| || | ||||| ||| | | |||| |||||| || |||| Sbjct 46733 AGCATTGAAGAGGGTAGGGGAGGCGTGGGTGA--AGAACTTGCTGGACATGAGGTGGTAT 46676 Query 112016 GTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGATTGCGACCCGCATGAACATG 112075 ||||| | |||| |||||||| || || |||||| | || || ||||| | |||| Sbjct 46675 GTCTCGAGGACACGCTCAATGTCGTCTCCCCAGATGCCAACGGCCACTCGCATAATCATG 46616 Query 112076 TACTGTGGGGTTTCCATGAGGATGCCATCGAGCCGTTGAAGATA-GCTCTTCTCAAGGGT 112134 | ||||| || | | |||| |||||| |||| || | || ||| || || Sbjct 46615 TGTTGTGGCCGCTCGACAATCTTGCCGTCGAGCTTCAGAAGGTATGATC-GCTCCAGCGT 46557 Query 112135 TTTGAGACCAAAGTA 112149 |||| |||||||| Sbjct 46556 CTTGAAGCCAAAGTA 46542 >seq804 Length=175399 Score = 98.7 bits (108), Expect = 1e-15 Identities = 148/208 (71%), Gaps = 2/208 (1%) Strand=Plus/Plus Query 122658 GGCAAACTCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACC 122717 |||||| ||| ||| |||||||| || || || || || || || || ||| || || Sbjct 35147 GGCAAAGTCCGTGTGCAGACCCTCGTCACGAGAGATGAGCTCGTTGGAAAAGGTCAGGCC 35206 Query 122718 TGGCATGAGACCCCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGAT 122777 ||||||||||| |||||||| | ||| |||| | | || | ||| ||||||||| Sbjct 35207 GGGCATGAGACCTCGCTTCTTGAGCCAGAAAATGGAGGCAAAGGCACCGCTGAAGAAGAT 35266 Query 122778 ACCCTCCACACACGCAAACGCAAAAAGGCGTTCGGCGAAGGAGCGAG-ACTTTGCATCAA 122836 |||||| ||| ||||| |||| || || | ||| ||||| |||| ||| | | | Sbjct 35267 ACCCTCGACAGCGGCAAAGGCAACGAGACGCTGGGCAAAGGA-CGAGTTCTTGTCCTGGA 35325 Query 122837 ACCATTTCATTGCCCATTTCGCCTTCTT 122864 |||| || ||||| | |||||||| Sbjct 35326 TCCATCGAATCGCCCAGTCAGCCTTCTT 35353 >seq710 Length=40501 Score = 96.9 bits (106), Expect = 4e-15 Identities = 170/241 (71%), Gaps = 10/241 (4%) Strand=Plus/Plus Query 11708 CCCACACCAACAAACATCTCCACAAAGTTTG--CGGCAGAGCACTGGATGAATGGGACAT 11765 ||||| |||||||||||||||||||| | | | || | | ||| | ||| || || Sbjct 23915 CCCACGCCAACAAACATCTCCACAAACTCAGAACCGCTCA-CGCTGAA-GAAGGGCACGC 23972 Query 11766 TTGATTCACCCGCGATGGCTCGGGCGAGGAGGGTCTTTCCCGTACCTGGCTTACCCGCGA 11825 || || || || |||| |||||| || |||||||| || ||||| || |||| Sbjct 23973 CAGACTCTCCGGCAGTGGCCTTGGCGAGAAGCGTCTTTCCTGTTCCTGGAGGGCCGGCGA 24032 Query 11826 GAAGGGCGCCTCGGGGGATCTTGGCACC--ACTTC-CAAAATATCTCTCGGGTTGCTTGA 11882 ||| ||| || || |||||||||||||| |||| |||| | ||||||||||||| | Sbjct 24033 GAATGGCACCGCGAGGGATCTTGGCACCCAGCTTCTCAAACT---TCTCGGGTTGCTTCA 24089 Query 11883 GAAAATCCACAATCTCTTCAAGTTCATCTTTGGCCGCGTCAATCCCCTCAACATCACTGA 11942 | ||| |||| ||| || ||| |||||| | || | || |||| || |||| Sbjct 24090 GGAAACTAACAAACTCCATAATTTCCGTCTTGGCCTCTTCCAGACCAGCAACGTCGCTGA 24149 Query 11943 A 11943 | Sbjct 24150 A 24150 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 628025052396000