Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichoderma_20parareesei_20[genbank_20GCA_5F001050175.1_202015-07-
08] 885 sequences; 32,070,663 total letters
Query= NC_028091.1
Length=196300
Score E
Sequences producing significant alignments: (Bits) Value
seq736 219 5e-52
seq804 98.7 1e-15
seq710 96.9 4e-15
>seq736
Length=134049
Score = 219 bits (242), Expect = 5e-52
Identities = 1156/1815 (64%), Gaps = 53/1815 (3%)
Strand=Plus/Minus
Query 110363 CGGAGATAGTACATCCCGGTCTTGAGTCCTTGTTTCCATGCGTACATATGCATAGAAGAG 110422
||||| |||||||| ||||||||||| || | ||||| || | ||||| | |
Sbjct 48331 CGGAGGTAGTACATGCCGGTCTTGAGACCGAGCTTCCAGCCGGTGAAGTGCATGCTGGTG 48272
Query 110423 AGCTTGGACATCGTTGGACTTTCCATGAAGAGGTTCAT--ACTTTGACTTTGGTCAATGA 110480
| |||| |||||| || | |||| || ||| | ||| |||| |||| ||||
Sbjct 48271 ATCTTGCCCATCGTGGGGTCCTTCATGTGGATGTTTAGGGACTGGGACT--GGTCGATGA 48214
Query 110481 AGCGCCCCCGTTGTGCCGCCATATCAATGACAT--CCTTCATCTTAATTTCCCAAACTGT 110538
| || || | |||||||| | | || | | | | | || ||||| || ||
Sbjct 48213 AAGCACCACGATCAGCCGCCATCTGGACGATTTGACGCTGAGAT--ATCTCCCAGACGGT 48156
Query 110539 GCGATAGAGATTCTTGATATCATCTGGGATATCTGAGATATTCTGGATGGAACCCCCCGC 110598
|| || |||||| || || ||||| | | || ||||||||||| || | |
Sbjct 48155 CTTGTACAGGGCCTTGATGTCCTCGGGGATGTTGGGAATGTTCTGGATGGAGCCGTTCTC 48096
Query 110599 CTTCACCATGAGATCCTTCATATCCTTGGACCAGAGACCAATCTTCTTGAGGTCATTGAC 110658
| ||| | | |||||| | | ||||| || || | | ||||| ||||
Sbjct 48095 GGCAATGATGCGGTTCTTCATGGCGTCAGACCACAGGCCGGTGTCGACCAGGTCCTTGAG 48036
Query 110659 GAGGTGCTTGTTGACAATGACAAACTCACCTGCGAGGGTTCTTCTCAGGTAGATGTTTGT 110718
|| |||||||| |||||||| || ||| | || | |||||||||| |
Sbjct 48035 AAGCCAAGGGTTGACAACCTGGAACTCACCAGCAAGGACACGTCGCTGGTAGATGTTGGA 47976
Query 110719 TGTGTATGGTTCAAAGCATTCATTATTACCCAAGATTTGTGCGGTGGAGGCTGTTGGCAT 110778
||||| || || |||||||| || || |||| || || | ||| ||| || |||||
Sbjct 47975 GGTGTAGGGCTCGAAGCATTCGTTGTTGCCCAGAATCTGAGAGGTACTGGCAGTGGGCAT 47916
Query 110779 TGGTGCCATCAAAAGACTGTTACGAAGACCCTTCTCCTTGATGCGTTCCTTGAGAACATC 110838
|| || | | | ||||| || | ||| | ||||||||| | |||||||| ||
Sbjct 47915 AGGAGCGACGAGCAAGCTGTTGCGGACACCGTGCTCCTTGATCTGCTCCTTGAGGGAGTC 47856
Query 110839 CCAGTCGTA---GTTG-AGCTTGGTTTCACCTTCCCACATGTCAAACTGAAGCACCCCTT 110894
||| || | || | || || || || | |||||||||| |||| || | || |
Sbjct 47855 CCACTCCCACAGGTCGGAG---GGCTTGACGT-CCCACATGTCGTACTGGAGGATACCCT 47800
Query 110895 GGGACGCGGGAGAACCCTCAAAGGTTTCATAGGAACCTTGGGCTTCAGCCAATTCACAGC 110954
|| || || || |||| || | |||||||| || | | | | || | || |
Sbjct 47799 CAGATGCAGGCGATCCCTTGAACGATTCATAGGGGCCCTCGACCTTGGCAATCTCCATGG 47740
Query 110955 TCGCCTCCAGGGATGCGTGATACATGGTTTCAAAGATACGAGCATTCATCTCCTTGGCTT 111014
|| || |||| || || || ||||| || ||||| | |||| ||| || |
Sbjct 47739 AAGCTTCAAGGGCGGCATGGTAAATGGTCTCGAAGATCTGCTTGTTCAGCTCGCGAGCCT 47680
Query 111015 CATCTGAATCAAATGCGTAGCGGCACAAA-ATAAATACATCCGCGAGACCTTGAACACCC 111073
| || ||||| | | || ||| | | || | || || ||||| || |||||
Sbjct 47679 CGGGAGACTCAAAGG-GCAGACGCAGAGCGAGGAACGCGTCAGCAAGACCCTGGACACCG 47621
Query 111074 AAACCAATAGGTCTGTGTCGCATATTAGACTTTCGCGCAGTCTCAACGGGATAAAAATTT 111133
| ||| ||||||| ||| ||||| || || || || ||| ||||| || ||
Sbjct 47620 ACACCGATAGGTCGGTGGCGCATGTTGCTGTTGCGAGCCTCCTCGACGGGGTAGTGGTTC 47561
Query 111134 CTGTCAATGACTCGGTTTAGATTTTTGGTAACAATCTTTGTGATTTCATGAAGTTTTTCA 111193
|| |||| ||||| || || | || | ||| |||| ||| ||||| || |
Sbjct 47560 ACATCGATGATGCGGTTGAGGTTGCGGACGACCACCTTGGTGACTTCGTGAAGCTTCTTG 47501
Query 111194 TAATCAAAAGTGCGAGTCTCTTCATTGACATACTTTGGAAGGGCGATTGATGCCAAATTG 111253
| || | || | | | |||| | |||||||| | || ||||| |||
Sbjct 47500 AAGTCGTAGCAGCCCTCGTTGTAGTCGACAAAGGCGGGAAGGGCCAGAGAGGCCAAGTTG 47441
Query 111254 CAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAAATTTCTGTACATAAGTTGGAACTC 111313
|| ||||| ||| || | |||||| | || || || || | ||| || ||
Sbjct 47440 CAGACAGCGACCTCGTCGGGGGCACAGTACTCAATGATCTCAGTGCAGAGGTTAGAGCTG 47381
Query 111314 TTAATCGTCCCCAAATTCTTTTGGTTACTCTTCTTGTTGCACGCATCCTTGTAGAGCATG 111373
|| || ||||| ||||| ||||| ||||| |||||| |||||||| ||||||
Sbjct 47380 CGGATGGTGCCCAAGTTCTTCTGGTTGCTCTTGCGGTTGCAGTGGTCCTTGTAAAGCATG 47321
Query 111374 TAGGGCGTCCCCGTCTCCGTCTGTGATTTGAGAATAGCCTTCCAAA-CATCGGCGGCTGG 111432
|||| | || ||||| ||||| | | || || | | ||| | | || | | ||
Sbjct 47320 AAGGGGTTACCAGTCTCGGTCTGGGCCTCCAGGATGGAGTACCACAGCTTCTGAGCACGG 47261
Query 111433 TACAATGGCGTT--GGCC-CGTCCCTCCGCCTCGTACTTTGTGTAGAGGGCTTCAAACTC 111489
|||| || | || ||||||||| |||||||||| ||| || || ||||||||
Sbjct 47260 ----ATGGTCTTACGACCACGTCCCTCCCTCTCGTACTTTTCGTACAGAGCCTCAAACTC 47205
Query 111490 CTCACCCACCGCGTCGGAGAGACCTGGTGCCTT-GTCTGGACAGAAAAGAGACCATTGAC 111548
||| || ||| | ||||| || || || || || || | || | ||| | |
Sbjct 47204 CTCGCCGTAGCAGTCAGCAAGACCAGG-GCATTCGTTGGGGCACATGAGCGTCCAGT--C 47148
Query 111549 CACCTTC--CTCAACCCGCTTCATGAAAAGGTCTGGAATCCACAGGG-ATGAAAAGAGAT 111605
|| ||| ||| || ||||||||||| || || || |||||||| | | | || || |
Sbjct 47147 CAAGTTCTTCTCGACACGCTTCATGAAGAGATCGGGGATCCACAGAGCAAGGAACAAG-T 47089
Query 111606 CTCTACACCGAGCCTCTTCGTCACCTTGGTTGAGTCGTAACTCAAGGAACTCCATGATAT 111665
| | ||| |||| || | || ||||| || | |||||||| || | || |
Sbjct 47088 CGCGGGCGCGAACCTCCTCCTTGCCGTGGTTCTTGCGGAGATCAAGGAAGTCAAAGACGT 47029
Query 111666 CCGCGTGCCATGGCTCAAGATAGACTGCGATAGATCCCTTTCGACGC------CCAGCTT 111719
| |||||||| ||||| || |||| || | | || ||||| ||| | |
Sbjct 47028 CGGCGTGCCAGGGCTCGAGGTAGATGGCAAAGGCACCAG---GACGCTTGTTGCCACCCT 46972
Query 111720 GATTTACATAGCGCGCTGTGGCGTTAAATACGCGAAGCATTGGAATAATACCATCTGATT 111779
| | || || || || ||| ||| || || || ||||| || ||||| || | ||
Sbjct 46971 GGTCGACGTATCGGGCAGTGTTGTTGAAGACTCGCAGCATGGGGATAATGCCGTTGGAGG 46912
Query 111780 GACCATTTGTCCCC-CGAA-TACGAGATTTATTGGCTCTCACATCATGGATGTGCATCCC 111837
|| || || || ||| || ||| | |||| | | |||| || || ||
Sbjct 46911 TGCCGTTGGTGCCGGCGATGTAGGAGCC--AGTGGCACGGATGCGGTGGACGTTCAGACC 46854
Query 111838 AATACCCCCAGCCCACTTTGAGATTTGCGCACACTCCGTAAGAGTTCCATAGATACCGTT 111897
|| || |||||| ||| || || |||||| | | || || |||||||||| |
Sbjct 46853 GATGCCACCAGCCATCTTGGAAATCATGGCACACGTCTTCAGGGTGTCATAGATACCCTC 46794
Query 111898 GATTGAGTCCTCCTTGTTGGCGATAAGGAAGCAACTGGACATCTGCGGTCTTGGTGTACC 111957
|| ||| ||||| || | | |||||||| ||||| ||| | | || || ||
Sbjct 46793 AATGCTGTCGTCCTTCATGTCCACCAGGAAGCATGAGGACAGCTGGGCTTGCGGGGTGCC 46734
Query 111958 AGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATACCTTG--GGACATCTTGTCGTAT 112015
||||||||||||||| || | ||||| ||| | | |||| |||||| || ||||
Sbjct 46733 AGCATTGAAGAGGGTAGGGGAGGCGTGGGTGA--AGAACTTGCTGGACATGAGGTGGTAT 46676
Query 112016 GTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGATTGCGACCCGCATGAACATG 112075
||||| | |||| |||||||| || || |||||| | || || ||||| | ||||
Sbjct 46675 GTCTCGAGGACACGCTCAATGTCGTCTCCCCAGATGCCAACGGCCACTCGCATAATCATG 46616
Query 112076 TACTGTGGGGTTTCCATGAGGATGCCATCGAGCCGTTGAAGATA-GCTCTTCTCAAGGGT 112134
| ||||| || | | |||| |||||| |||| || | || ||| || ||
Sbjct 46615 TGTTGTGGCCGCTCGACAATCTTGCCGTCGAGCTTCAGAAGGTATGATC-GCTCCAGCGT 46557
Query 112135 TTTGAGACCAAAGTA 112149
|||| ||||||||
Sbjct 46556 CTTGAAGCCAAAGTA 46542
>seq804
Length=175399
Score = 98.7 bits (108), Expect = 1e-15
Identities = 148/208 (71%), Gaps = 2/208 (1%)
Strand=Plus/Plus
Query 122658 GGCAAACTCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACC 122717
|||||| ||| ||| |||||||| || || || || || || || || ||| || ||
Sbjct 35147 GGCAAAGTCCGTGTGCAGACCCTCGTCACGAGAGATGAGCTCGTTGGAAAAGGTCAGGCC 35206
Query 122718 TGGCATGAGACCCCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGAT 122777
||||||||||| |||||||| | ||| |||| | | || | ||| |||||||||
Sbjct 35207 GGGCATGAGACCTCGCTTCTTGAGCCAGAAAATGGAGGCAAAGGCACCGCTGAAGAAGAT 35266
Query 122778 ACCCTCCACACACGCAAACGCAAAAAGGCGTTCGGCGAAGGAGCGAG-ACTTTGCATCAA 122836
|||||| ||| ||||| |||| || || | ||| ||||| |||| ||| | | |
Sbjct 35267 ACCCTCGACAGCGGCAAAGGCAACGAGACGCTGGGCAAAGGA-CGAGTTCTTGTCCTGGA 35325
Query 122837 ACCATTTCATTGCCCATTTCGCCTTCTT 122864
|||| || ||||| | ||||||||
Sbjct 35326 TCCATCGAATCGCCCAGTCAGCCTTCTT 35353
>seq710
Length=40501
Score = 96.9 bits (106), Expect = 4e-15
Identities = 170/241 (71%), Gaps = 10/241 (4%)
Strand=Plus/Plus
Query 11708 CCCACACCAACAAACATCTCCACAAAGTTTG--CGGCAGAGCACTGGATGAATGGGACAT 11765
||||| |||||||||||||||||||| | | | || | | ||| | ||| || ||
Sbjct 23915 CCCACGCCAACAAACATCTCCACAAACTCAGAACCGCTCA-CGCTGAA-GAAGGGCACGC 23972
Query 11766 TTGATTCACCCGCGATGGCTCGGGCGAGGAGGGTCTTTCCCGTACCTGGCTTACCCGCGA 11825
|| || || || |||| |||||| || |||||||| || ||||| || ||||
Sbjct 23973 CAGACTCTCCGGCAGTGGCCTTGGCGAGAAGCGTCTTTCCTGTTCCTGGAGGGCCGGCGA 24032
Query 11826 GAAGGGCGCCTCGGGGGATCTTGGCACC--ACTTC-CAAAATATCTCTCGGGTTGCTTGA 11882
||| ||| || || |||||||||||||| |||| |||| | ||||||||||||| |
Sbjct 24033 GAATGGCACCGCGAGGGATCTTGGCACCCAGCTTCTCAAACT---TCTCGGGTTGCTTCA 24089
Query 11883 GAAAATCCACAATCTCTTCAAGTTCATCTTTGGCCGCGTCAATCCCCTCAACATCACTGA 11942
| ||| |||| ||| || ||| |||||| | || | || |||| || ||||
Sbjct 24090 GGAAACTAACAAACTCCATAATTTCCGTCTTGGCCTCTTCCAGACCAGCAACGTCGCTGA 24149
Query 11943 A 11943
|
Sbjct 24150 A 24150
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 628025052396000
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