Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20parareesei_20[genbank_20GCA_5F001050175.1_202015-07- 08] 885 sequences; 32,070,663 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq736 275 7e-69 seq804 143 3e-29 seq710 98.7 1e-15 >seq736 Length=134049 Score = 275 bits (304), Expect = 7e-69 Identities = 935/1435 (65%), Gaps = 35/1435 (2%) Strand=Plus/Plus Query 104222 CCACAGTACATGTTCATGCGCGTGGCCATCGGTATTCATGGGGAAGACATTGATTCTGTC 104281 ||||| ||||| | ||||| |||||| | || || || || |||||||| |||| Sbjct 46608 CCACAACACATGATTATGCGAGTGGCCGTTGGCATCTGGGGAGACGACATTGAGCGTGTC 46667 Query 104282 TTGGAGACATACGACAAGATGTCC--CAAGGTATGTTCATTCACGCAACACCAACCCTCT 104339 | ||||||||| || |||||| |||| | | ||| ||||| | || ||||||| Sbjct 46668 CTCGAGACATACCACCTCATGTCCAGCAAGTTCT--TCACCCACGCCTCCCCTACCCTCT 46725 Query 104340 TCAATGCTGGTACACCAAGACCCCAAATGTCCAGTTGCTTCCTTATCGCCAACAAGGAGG 104399 |||||||||| || || | |||| ||||| |||||||| | | || ||||| | Sbjct 46726 TCAATGCTGGCACCCCGCAAGCCCAGCTGTCCTCATGCTTCCTGGTGGACATGAAGGACG 46785 Query 104400 ACTCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAAATCTCAAAGTGGGCTG 104459 || || | |||||||||| || || | | |||||| || || ||| ||||| Sbjct 46786 ACAGCATTGAGGGTATCTATGACACCCTGAAGACGTGTGCCATGATTTCCAAGATGGCTG 46845 Query 104460 GGGGTATTGGGATGCACATCCATGATGTGAGAGCCAATAAATCTCGTAT-TCGGGGG-AC 104517 | || || || || || |||| | | |||| | ||| || ||| || || Sbjct 46846 GTGGCATCGGTCTGAACGTCCACCGCATCCGTGCCACTGG--CTCCTACATCGCCGGCAC 46903 Query 104518 AAATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTA 104577 || || || | || ||||| || ||||| || || || ||| ||| || || || Sbjct 46904 CAACGGCACCTCCAACGGCATTATCCCCATGCTGCGAGTCTTCAACAACACTGCCCGATA 46963 Query 104578 TGTAAATCAAGCTGG------GCGTCGAAAGGGATCTATCGCAGTCTATCTTGAGCCATG 104631 || | || | ||| ||||| || | | || |||| || ||||| || Sbjct 46964 CGTCGACCAGGGTGGCAACAAGCGTCCT---GGTGCCTTTGCCATCTACCTCGAGCCCTG 47020 Query 104632 GCACGCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGACGAGGAGGCGCG 104691 |||||| || || | || |||||||| | || ||||| || | ||||||| || Sbjct 47021 GCACGCCGACGTCTTTGACTTCCTTGATCTCCGCAAGAACCACGGCAAGGAGGAGGTTCG 47080 Query 104692 GTGCCGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGAGGA 104751 |||||| | ||| ||||| ||||| || ||||||||||||||| | || ||| | Sbjct 47081 CGCCCGCGACTTGTTCCTTGCTCTGTGGATCCCCGATCTCTTCATGAAGCGTGTCGAGAA 47140 Query 104752 GA--GTGGCAATTGGTCTCTCTTTTGTCCAGAC-AAGGCACCTGGTCTCTCCGATGCCGT 104808 || ||| | ||| | ||| | || || || || || |||||||| | || | Sbjct 47141 GAACTTGG--ACTGGACGCTCATGTGCCCCAACGAATGC-CCTGGTCTTGCTGACTGCTA 47197 Query 104809 GGGTGAGGAGTTTGAAGCCCTTTACACAAAGTACGAGGAAGAAGGTCGGGCGACTGCGAC 104868 || ||||||||||| || || ||| |||||||||| || || || | | ||| Sbjct 47198 CGGCGAGGAGTTTGAGGCTCTGTACGAAAAGTACGAGAGGGAGGGACGTGGTCGTAAGAC 47257 Query 104869 GGTGCCAGCTGCCGATG-TGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACTGGTACAC 104927 | | ||| | || | ||||| | | || || || | || ||||||||||||| | Sbjct 47258 CATCCGTGCT-CAGAAGCTGTGGTACTCCATCCTGGAGGCCCAGACCGAGACTGGTAACC 47316 Query 104928 CATACATGCTTTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAGAATTTGGGTGTGA 104987 | | |||||||||||| ||| ||| |||| ||||| || || ||||| ||||| | Sbjct 47317 CCTTCATGCTTTACAAGGACCACTGCAACCGCAAGAGCAACCAGAAGAACTTGGGCACCA 47376 Query 104988 TCAAGAGTTCCAATCTCTGTACAGAAATCTTGGAATTTACAGACAAAGATGAGACGGCTG 105047 || || || || ||||| || || ||| | || | | | || ||| |||| Sbjct 47377 TCCGCAGCTCTAACCTCTGCACTGAGATCATTGAGTACTGTGCCCCCGACGAGGTCGCTG 47436 Query 105048 TGTGTAACCTCGCATCAATCGCTCTCCCCAAGTATGTGGATCCAGAGACAAAGAC--ATT 105105 | || ||| | || || | || || ||| | ||| || | | | || | | | | Sbjct 47437 TCTGCAACTTGGCCTCTCTGGCCCTTCCCGCCTTTGTCGA-CTACA-ACGAGGGCTGCTA 47494 Query 105106 TGATTATGAAAAACTCCACGAAGTTACGAAAACTGTCACCAAAAACCTAAACAGAGTTAT 105165 || | | || || |||||||| || || ||| | ||||| ||| | | || Sbjct 47495 CGACTTCAAGAAGCTTCACGAAGTCACCAAGGTGGTCGTCCGCAACCTCAACCGCATCAT 47554 Query 105166 TGATAGAAATTTTTACCCCGTTGAGACTGCTCGTAAATCTAATATGAGACACCGTCCAAT 105225 ||| || |||||||| ||| ||||| || || ||| | ||||| || || Sbjct 47555 CGATGTGAACCACTACCCCGTCGAGGAGGCTCGCAACAGCAACATGCGCCACCGACCTAT 47614 Query 105226 TGGTCTCGGTGTTCAGGGTCTCGCGGATGTATTCAT-TCTTTGTCGCCACGCATTTGATT 105284 ||| ||||||| |||||||| || || | ||| | || || || | | ||||| | Sbjct 47615 CGGTGTCGGTGTCCAGGGTCTTGCTGACGCGTTCCTCGCTCTG-CGTCTGCCCTTTGAGT 47673 Query 105285 CCGACGAAGCGAAGGAAATCAATGCGCGCATATTTGAGACCATGTATCACGCCGCTCTTG 105344 | ||| || || | || || || || |||||||| || || ||||| |||| Sbjct 47674 CTCCCGAGGCTCGCGAGCTGAACAAGCAGATCTTCGAGACCATTTACCATGCCGCCCTTG 47733 Query 105345 AGGCGAGTTCA--GAGTTGGCAGAGGTTGATGGTCCATATGAAACCTTTGAGGGTTCTCC 105402 | || | || ||| | || |||| || || || |||||| | || |||| || || Sbjct 47734 AAGC--TTCCATGGAGATTGCCAAGGTCGAGGGCCCCTATGAATCGTTCAAGGGATCGCC 47791 Query 105403 AGCTTCACAAGGGGTGCTTCAATTTGATATGTGGGAAGGTGAGACCAAGCTTCACTACGA 105462 || || | || | || || | || |||||||| | || || | | || Sbjct 47792 TGCATCTGAGGGTATCCTCCAGTACGACATGTGGGACGTCAAGCCCTCCGACCTGTGGGA 47851 Query 105463 CTGGGAAGCTCTCAAGGAACGCATCAAGGAGAAGGGTCTTCGTAACAGTCTCCTCATGGC 105522 ||||| | |||||||| | ||||||||| | ||| | || ||||| | ||| | || Sbjct 47852 GTGGGACTCCCTCAAGGAGCAGATCAAGGAGCACGGTGTCCGCAACAGCTTGCTCGTCGC 47911 Query 105523 TCCAATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAATGAATGCTTTGAACCCTA 105582 ||| ||||| || ||| ||| | || || |||| || || |||||||| || ||||| Sbjct 47912 TCCTATGCCCACTGCCAGTACCTCTCAGATTCTGGGCAACAACGAATGCTTCGAGCCCTA 47971 Query 105583 CACGACGAACATCTATCTGAGAAGAACCCTCGCGGGAGAGTTTGTGATTGTCAAC 105637 ||| | |||||||| | | || | ||| || || ||||| | |||||||| Sbjct 47972 CACCTCCAACATCTACCAGCGACGTGTCCTTGCTGGTGAGTTCCAGGTTGTCAAC 48026 >seq804 Length=175399 Score = 143 bits (158), Expect = 3e-29 Identities = 179/243 (74%), Gaps = 2/243 (1%) Strand=Plus/Minus Query 94714 CTCTTTGAAGCCATCCAAACAGTTCCGTGTATTCAAAAGAAAGCGGATTGGGCTATGAAG 94773 ||||| | ||||| | || |||| || |||| ||||| || || ||||| || Sbjct 35389 CTCTTCAACGCCATTGAGACCATTCCTTGCATTCGCAAGAAGGCTGACTGGGCGATTCGA 35330 Query 94774 TGGTTTGAT-ACAAAGTCGCGTTCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGA 94832 ||| | | |||| | ||| ||||||| |||| ||| | || ||||| ||| || Sbjct 35329 TGGATCCAGGACAAGAACTCGT-CCTTTGCCCAGCGTCTCGTTGCCTTTGCCGCTGTCGA 35271 Query 94833 GGGTATCTTCTTCTCTGGTTCCTTCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCAT 94892 ||||||||||||| ||| |||| | | |||| ||||||||||||||||||||||| Sbjct 35270 GGGTATCTTCTTCAGCGGTGCCTTTGCCTCCATTTTCTGGCTCAAGAAGCGAGGTCTCAT 35211 Query 94893 GCCAGGTCTCTGCTTCTCCAACGAGCTTATCTCTCGTGACGAGGGACTCCACCAAGAGTT 94952 ||| || || ||| ||||||||||| ||||||||||||||||| || ||| || || Sbjct 35210 GCCCGGCCTGACCTTTTCCAACGAGCTCATCTCTCGTGACGAGGGTCTGCACACGGACTT 35151 Query 94953 TGC 94955 ||| Sbjct 35150 TGC 35148 >seq710 Length=40501 Score = 98.7 bits (108), Expect = 1e-15 Identities = 183/263 (70%), Gaps = 8/263 (3%) Strand=Plus/Plus Query 9703 GGCATCAATCTCATCAATGAAGACGATGCATGGTTGATTTTCGCGAGCGACTTCAAAGAG 9762 ||| || || || |||||||||| |||||| || ||| | || | | | || | Sbjct 23836 GGCGTCGATTTCGTCAATGAAGATGATGCAGGGCGCATTCTTTCGGCCTTCCGCGAACAA 23895 Query 9763 ATCCCGTACACGCTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGCGGCG-GAAC 9821 || || ||||| | |||||| |||||||||||||||||||| | | || || Sbjct 23896 GTCTCGCACACGAGAAGGGCCCACGCCAACAAACATCTCCACAAACTCAGAACCGCTCAC 23955 Query 9822 ATTGGATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTACCCG 9881 | || |||||| || ||| || || ||| |||| ||||||||| ||||| || | Sbjct 23956 GCT-GAAGAAGGGCACGCCAGACTCTCCGGCAGTGGCCTTGGCGAGAAGCGTCTTTCCTG 24014 Query 9882 TACCTGGCTTACCCGCGAGGAGGGCACCTCGTGGAATCTTGGCGCC--ACTTC-CAAAGT 9938 | ||||| || ||||| | |||||| || || |||||||| || |||| |||| | Sbjct 24015 TTCCTGGAGGGCCGGCGAGAATGGCACCGCGAGGGATCTTGGCACCCAGCTTCTCAAACT 24074 Query 9939 ATCTCTCAGGTTGCTTAAGAAAA 9961 |||| |||||||| || ||| Sbjct 24075 ---TCTCGGGTTGCTTCAGGAAA 24094 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583254347677400