Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20parareesei_20[genbank_20GCA_5F001050175.1_202015-07- 08] 885 sequences; 32,070,663 total letters Query= NC_028094.1 Length=473558 Score E Sequences producing significant alignments: (Bits) Value seq373 132 1e-25 seq474 96.9 1e-14 seq744 89.7 2e-12 seq877 87.8 5e-12 >seq373 Length=44988 Score = 132 bits (146), Expect = 1e-25 Identities = 168/231 (73%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566 |||||||||||| | | ||||| || || || |||||||| || || || || || || Sbjct 36089 CATACCACCACGAAGGCGGAGAACCAGGTGGAGGGTAGACTCCTTCTGGATGTTGTAGTC 36030 Query 140567 AGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGG 140626 || | ||||| || || ||||| || || ||||||||||| ||||| ||||| || || Sbjct 36029 GGAGAGGGTTCGGCCGTCCTCAAGCTGCTTGCCAGCAAAGATGAGACGCTGCTGGTCCGG 35970 Query 140627 AGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTC 140686 ||| || || || || ||||| || || | || ||||| || || | || || | || Sbjct 35969 AGGGATACCCTCCTTGTCCTGGATCTTGGACTTCACATTGTCGATGGTGTCGGACGACTC 35910 Query 140687 AACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 || || || || | ||||| ||||| || || || || || |||||||| Sbjct 35909 GACCTCGAGGGTGATGGTCTTGCCGGTGAGGGTCTTGACGAAGATCTGCAT 35859 Score = 131 bits (144), Expect = 5e-25 Identities = 170/235 (72%), Gaps = 0/235 (0%) Strand=Plus/Minus Query 140503 TTTACATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTAT 140562 ||||| |||||||| | | ||||| || || ||||| ||| || || || || | Sbjct 36835 TTTACTGGCCACCACGGAGACGGAGAACCAGGTGCAGAGTGCTCTCCTTCTGGATGTTGT 36776 Query 140563 AATCAGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGAT 140622 | || || || || || ||||| || || || ||||||||||| | || ||||| | Sbjct 36775 AGTCGCTCAAGGTACGACCGTCTTCCAGCTGCTTACCAGCAAAGATCAAGCGCTGCTGGT 36716 Query 140623 CAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATG 140682 |||| || || || || || |||||||| || | || || || || || | |||||||| Sbjct 36715 CAGGCGGGATACCCTCCTTGTCCTGAATCTTCGACTTGACGTTGTCGATGGTATCAGATG 36656 Query 140683 GTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 ||| ||||| || |||| ||||| || || ||||| || ||||| |||||||| Sbjct 36655 ATTCCACTTCCAGAGTAATCGTCTTACCCGTCAGTGTCTTAACAAAGATCTGCAT 36601 Score = 120 bits (132), Expect = 9e-22 Identities = 158/219 (72%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566 ||||||||| || | | || ||||| || || |||||||| || || || || || || Sbjct 36375 CATACCACCGCGAAGACGGAGGACAAGGTGGAGTGTAGACTCCTTCTGGATGTTGTAGTC 36316 Query 140567 AGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGG 140626 || | ||||| || || ||||| || || ||||||||||| ||||| ||||| || || Sbjct 36315 GGAGAGGGTTCGGCCGTCCTCAAGCTGCTTGCCAGCAAAGATGAGACGCTGCTGGTCCGG 36256 Query 140627 AGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTC 140686 ||| || || || || ||||| || || | || || || || || | ||||| | || Sbjct 36255 AGGGATACCCTCCTTGTCCTGGATCTTGGACTTGACGTTGTCGATGGTGTCAGAGGACTC 36196 Query 140687 AACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTAC 140725 ||| || || || | ||||| ||||| || || || || Sbjct 36195 AACCTCGAGAGTGATCGTCTTGCCGGTCAGGGTCTTGAC 36157 Score = 114 bits (126), Expect = 4e-20 Identities = 164/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566 |||||||||||| | | || || | || || || ||| || || || || || || Sbjct 36603 CATACCACCACGAAGACGGAGGACCAAGTGCAGGGTGCTCTCCTTCTGGATGTTGTAGTC 36544 Query 140567 AGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGG 140626 || || || || ||||| || || || ||||| || || || || ||||| || || Sbjct 36543 GCTCAAAGTGCGGCCGTCTTCCAGCTGCTTACCAGCGAAAATCAGGCGCTGCTGGTCCGG 36484 Query 140627 AGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTC 140686 |||||| || || || |||||||| || | || || || ||||| | |||||||| || Sbjct 36483 AGGAATACCCTCCTTGTCCTGAATCTTGGACTTGACGTTGTCAATAGTATCAGATGACTC 36424 Query 140687 AACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 || || || || | |||||||| || || || || || ||||||||||| Sbjct 36423 GACCTCCAGGGTGATGGTCTTTCCTGTGAGGGTCTTGACGAAAATCTGCAT 36373 >seq474 Length=61714 Score = 96.9 bits (106), Expect = 1e-14 Identities = 216/323 (67%), Gaps = 1/323 (0%) Strand=Plus/Plus Query 349610 GCTGTTATTACTGTACCAGCCTATTTTAATGATGCCCAGCGTTCTGCAACAAAAGATGCT 349669 || || || || || || ||||| || || || ||||||| || || || || || Sbjct 41651 GCCGTCATCACCGTCCCCGCCTACTTCAACGACAGCCAGCGTCAGGCTACCAAGGACGCC 41710 Query 349670 GGCAGCATTGCGGGGTTAAATGTTCTAAGAATGATTAATGAACCCACTGCTGCAGCAATT 349729 || |||||| || | || || || | || || || || ||||| || || || || Sbjct 41711 GGTCTCATTGCCGGCCTCAACGTCCTGCGTATCATCAACGAGCCCACCGCCGCTGCCATC 41770 Query 349730 GCATATGGGCTTGATAAAATGAGTGACCAAGaaaaaaaTATTCTTATTTTTGATTTAGGT 349789 || || || ||||| || | | || || || | || || || ||| | ||| Sbjct 41771 GCCTACGGCCTTGACAAGAAGGTCGAGGGCGAGCGCAACGTGCTCATCTTCGATCTCGGT 41830 Query 349790 GGTGGTACTTTTGATGTATCACTACTAACACTTGAAGAGGGAATTTTTGAAGTTAAAGCA 349849 |||||||| || ||||| || || || || |||| ||||| || || || || || | Sbjct 41831 GGTGGTACCTTCGATGTGTCCCTCCTGACCATTGAGGAGGGTATCTTCGAGGTCAAGTCC 41890 Query 349850 ACTGCTGGTGATACACATCTTGGTGGAGAAGATTTTGATAATCGTCTCGTTTCGCATTTT 349909 ||||| ||||| || || | ||||| || || || || || ||||| || || || Sbjct 41891 ACTGCCGGTGACACTCACTTGGGTGGTGAGGACTTCGACAACCGTCTGGTCAACCACTTC 41950 Query 349910 GTTAAAGAATTTAAGCGTCAAGC 349932 || || || || ||||| ||||| Sbjct 41951 GTCAACGAGTTCAAGCG-CAAGC 41972 >seq744 Length=46994 Score = 89.7 bits (98), Expect = 2e-12 Identities = 100/133 (75%), Gaps = 3/133 (2%) Strand=Plus/Minus Query 377458 CGTGGCACACCACGTGTAACATTCGATTTAGATGCAACACCAGCAAAGTGGAAAGTATTA 377517 || |||||||| | || || ||| || || | ||||||||||||||||| || || Sbjct 18482 CGGGGCACACCGAGCGTGACGTTC---TTGGAAGACACACCAGCAAAGTGGAAGGTGTTC 18426 Query 377518 AGAGTTAATTGAGTAGTGGGCTCACCAATTGACTGCGCTGCAATAACGCCAACCATTTCT 377577 ||||| | || |||| |||||||| || ||||| || |||| || || |||||||| Sbjct 18425 AGAGTCATCTGCGTAGCAGGCTCACCGATGGACTGAGCCGCAAGGACACCCACCATTTCA 18366 Query 377578 CCAGGATTGACAA 377590 || || ||||||| Sbjct 18365 CCGGGGTTGACAA 18353 >seq877 Length=50207 Score = 87.8 bits (96), Expect = 5e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 140510 ACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGA 140569 ||||||||| | | || || || || || || ||| || || || || || || Sbjct 31701 ACCACCACGCAGGCGCAGGACCAGGTGGAGGGTGCTCTCCTTCTGGATGTTGTAGTCGCT 31642 Query 140570 TAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGG 140629 | || || ||||| || || || || || |||||||| || || ||||| || || || Sbjct 31641 CAGGGTGCGGCCATCCTCGAGCTGCTTGCCGGCAAAGATCAGGCGCTGCTGGTCCGGGGG 31582 Query 140630 AATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTCAAC 140689 || || || || |||||||| || | || || || || || | || || | || || Sbjct 31581 GATGCCCTCCTTGTCCTGAATCTTGGACTTGACGTTGTCGATGGTGTCGGAAGACTCCAC 31522 Query 140690 TTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 ||||| || | ||||| || || || || || || ||||||||||| Sbjct 31521 CTCAAGGGTGATCGTCTTCCCCGTGAGGGTCTTGACGAAAATCTGCAT 31474 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1515237218435655