Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20parareesei_20[genbank_20GCA_5F001050175.1_202015-07- 08] 885 sequences; 32,070,663 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq736 255 6e-63 seq146 104 3e-17 >seq736 Length=134049 Score = 255 bits (282), Expect = 6e-63 Identities = 414/591 (70%), Gaps = 6/591 (1%) Strand=Plus/Plus Query 53195 ATGCGCGTCGCCTTGGGTATCCACGGTGACGACTACACGCGTGTCCGTGAGACGTACGAC 53254 ||||| || ||| | || ||| || |||||| |||||||| ||||| ||| || Sbjct 46623 ATGCGAGTGGCCGTTGGCATCTGGGGAGACGACATTGAGCGTGTCCTCGAGACATACCAC 46682 Query 53255 TTAATGAGCCAAAAGTACTTTACGCACGCCACGCCAACCCTGTTCAACGCTGGTACGAAT 53314 | ||| | |||| ||| || |||||| | || ||||| ||||| ||||| || Sbjct 46683 CTCATGTCCAGCAAGTTCTTCACCCACGCCTCCCCTACCCTCTTCAATGCTGGCACCCCG 46742 Query 53315 CACCCTCAGATGTCGAGCTGCTTCCTGGTGGCGATGAAGGATGACTCGATCGACGGCATC 53374 || | ||| |||| ||||||||||||| |||||||| ||| || || || ||| Sbjct 46743 CAAGCCCAGCTGTCCTCATGCTTCCTGGTGGACATGAAGGACGACAGCATTGAGGGTATC 46802 Query 53375 TACGAGACGCTCAAGGAGTGTGCCCACATCTCCAAGTGGTCGGGTGGTATCGGTATCCAC 53434 || || || || ||| ||||||| || |||||| | | ||||| |||||| | || Sbjct 46803 TATGACACCCTGAAGACGTGTGCCATGATTTCCAAGATGGCTGGTGGCATCGGTCTGAAC 46862 Query 53435 TGCTCGAACG--TCCGTGCGAACGGCACACCAATCAAGGGGACGAACGGCGTCGCCGATG 53492 || | || ||||||| | ||| | ||| || || |||||| | || | | Sbjct 46863 G--TCCACCGCATCCGTGCCACTGGCTCCTACATCGCCGGCACCAACGGCACCTCCAACG 46920 Query 53493 GAATCGTGCCTATGCTCCGCGTCTTCAACAACACGGCCCGGTACGTCAACCAGGGTGGTG 53552 | || | || ||||| || |||||||||||||| ||||| |||||| |||||||||| Sbjct 46921 GCATTATCCCCATGCTGCGAGTCTTCAACAACACTGCCCGATACGTCGACCAGGGTGGCA 46980 Query 53553 GGAAGCGCAAGGGGTCGTTCGCCATCTACCTCGAGCCGTGGCACGCCGACATTATGGAGT 53612 ||||| || | || ||||||||||||||||| |||||||||||| | | || | Sbjct 46981 ACAAGCGTCCTGGTGCCTTTGCCATCTACCTCGAGCCCTGGCACGCCGACGTCTTTGACT 47040 Query 53613 TTCTCGAGCTGCGTCTGAATCAGGGTGACGAAGAGATGCGCTGCCGTGACCTGTTTACAG 53672 | || || || || ||| || || | || ||| | ||| ||| ||| |||| | Sbjct 47041 TCCTTGATCTCCGCAAGAACCACGGCAAGGAGGAGGTTCGCGCCCGCGACTTGTTCCTTG 47100 Query 53673 CTCTGTGGATTCCGGACCTCTTCATGCAAAAGGTGGAGAAGGACGAGGAGTGGTACCTGA 53732 |||||||||| || || ||||||||| | || |||||| || ||| ||| || | Sbjct 47101 CTCTGTGGATCCCCGATCTCTTCATGAAGCGTGTCGAGAAGAACTTGGACTGGACGCTCA 47160 Query 53733 TGTGCCCGAACGAGTGCCCCGG-CCTCCAGGGTGTCTACGGTGAGGAGTTT 53782 ||||||| ||||| ||||| || | | | | || |||||| ||||||||| Sbjct 47161 TGTGCCCCAACGAATGCCCTGGTCTTGCTGACTG-CTACGGCGAGGAGTTT 47210 Score = 123 bits (136), Expect = 3e-23 Identities = 303/452 (67%), Gaps = 17/452 (4%) Strand=Plus/Plus Query 55484 CGCAACTCCCTGCTCGTGGCGCCAATGCCAACCGCGTCGACGGCTCAGATCATGGGCAAC 55543 |||||| | ||||||| || || ||||| || || || ||||||| |||||||| Sbjct 47892 CGCAACAGCTTGCTCGTCGCTCCTATGCCCACTGCCAGTACCTCTCAGATTCTGGGCAAC 47951 Query 55544 AACGAGGCGTTCGAGCCGTACACGACCAACATCTACCTGCGCCGGACCCTAGCAGGTGAG 55603 ||||| |||||||| ||||| |||||||||||| ||| || ||| || |||||| Sbjct 47952 AACGAATGCTTCGAGCCCTACACCTCCAACATCTACCAGCGACGTGTCCTTGCTGGTGAG 48011 Query 55604 TTTGTCATGATCAACAAGCACCTCGTCAAGGACCTGCAGAAGATCAACAAGTGGAACC-C 55662 || | ||||| || ||||||||||| | | | | |||| | Sbjct 48012 TTCCAGGTTGTCAACCCTTGGCTTCTCAAGGACCTGGTCGACACCGGCCTGTGGTCTGAC 48071 Query 55663 GCAGATCAAGA--CGGAT-ATTGTGCGGAACGGGGGGTCCGTCCAGAA---TCTGGAGAT 55716 || || |||| || || |||| |||||| ||| ||||||| || | || Sbjct 48072 GCC-ATGAAGAACCGCATCATTGCCGAGAACGGC---TCCATCCAGAACATTCCCAACAT 48127 Query 55717 TCCTCTGCGTCTCAAGGAGATTTACCGGACGGTGTGGGAGATTCCACAGAAGAGTCTGAT 55776 || | |||||| | ||| ||| || |||||||| | ||| ||| || Sbjct 48128 CCCCGAGGACATCAAGGCCCTGTACAAGACCGTCTGGGAGATATCTCAGC---GTCAAAT 48184 Query 55777 TGAC---ATGAGTGCTGATCGTGGTGCGTACATCGACCAGTCCCAGTCTCTGAACATCTT 55833 | | ||| |||||||||||||| | |||||||||||||||||| || |||||| Sbjct 48185 CGTCCAGATGGCGGCTGATCGTGGTGCTTTCATCGACCAGTCCCAGTCCCTAAACATCCA 48244 Query 55834 CATGGAGAATCCTTCACTGGCCAAGTTGAGCTCGATGCACTTTTACGGGTGGAAGAAGGG 55893 |||| || | || | ||| |||| | | | |||||||| ||| |||||| || Sbjct 48245 CATGAAGGACCCCACGATGGGCAAGATCACCAGCATGCACTTCACCGGCTGGAAGCTCGG 48304 Query 55894 ACTCAAGACGGGTATGTACTATCTGCGGACCC 55925 |||||||| || |||||||| || || |||| Sbjct 48305 TCTCAAGACCGGCATGTACTACCTCCGTACCC 48336 >seq146 Length=52672 Score = 104 bits (114), Expect = 3e-17 Identities = 269/404 (67%), Gaps = 6/404 (1%) Strand=Plus/Minus Query 151876 CCGGTACCGATGCCCTCTGCACCGTTGACCAGAATCATCGGCACAATAGGGGCGTAAAAC 151935 || || ||||| || || || || |||| |||| ||| |||| |||||||| || | | Sbjct 27730 CCCGTGCCGATACCGTCGGCGCCATTGATGAGAACCATGGGCAGGATAGGGGCATACACC 27671 Query 151936 TCCGGCTCCACCTGTTGACCGTCATCCATCACGTATTTCAAAACGGAATTGTC-AGCCGG 151994 || ||||| | ||| | || || || | | || |||| || || ||| ||| | Sbjct 27670 TCGGGCTCAATCTGCTTTCCATCCTCGAACTGGTGCTTCAGGTTGGGATCGTCGAGC--G 27613 Query 151995 ATCGAATATCCGTCGAGT-CATA-GGACTCAAACGCGTGAAGATGTATCGGGAGCTGGCC 152052 | |||| | | | | || | || || || || ||| |||| || | |||||| Sbjct 27612 A-CGAAAAGATGGAGCGGGCAAACGGGGACAGGCGGGTAAAGGTGTAACGAGGGCTGGCG 27554 Query 152053 GCATCCTTGCCACCTGCCAGCCGCGTTCCAAACTGTCCAGAGGGCTCGAGGAGGTTGAGG 152112 || || |||||| || || || | ||||| | || |||||| || | ||||| | Sbjct 27553 GCGTCGGAGCCACCGGCAAGTCGAGAACCAAAGTTACCGCTGGGCTCCAGCACGTTGATG 27494 Query 152113 TTGTTGGCGCCCACGAAATTCTGAGCCAAATTCACAATCGTGCCCTGCAGACTCGCTTCA 152172 ||||| | ||||| || | ||||||| | || || ||||||| |||||| Sbjct 27493 TTGTTCGATCCCACAAAGTCTTGAGCCAGGCCAATGATGGTCTGCTGCAGAGAGGCTTCA 27434 Query 152173 CCGTGGTGATACGCCGTCTGCTCCGCGATGTATCCCGCCAACTGCGCCACCTTCATGTCC 152232 |||||||| || || ||| | | | || ||| || |||| || | | ||||| |||| Sbjct 27433 CCGTGGTGGTAGGCAGTCAGTCCGGAGACGTAACCAGCCAGCTCCACAACCTTTTCGTCC 27374 Query 152233 GTCGTCAGGTTCTTCTTGAGACAGGCGTAAATCACCTTGCGCTG 152276 | || ||| ||||| ||| ||||| | |||||| ||||| Sbjct 27373 TTGACCACGTTTCGCTTGAAACATGCGTACAGCACCTTTCGCTG 27330 Score = 96.9 bits (106), Expect = 4e-15 Identities = 223/331 (67%), Gaps = 4/331 (1%) Strand=Plus/Minus Query 118013 AGCCCCTTGATATGGGAACCGTCCAGATCCGCATCGGTCATGATCATCAGGCGGCCGTAC 118072 || ||||||||||| |||||| ||||| ||||| ||||||||||||| ||||||| Sbjct 26821 AGACCCTTGATATGACTACCGTCATGATCCTGATCGGCCATGATCATCAGGTGGCCGTAG 26762 Query 118073 CGTAAATCTC-TCAGGGAGTTATAAACCTTACCATGTTGGAGCCCGAGGATCTTTTTAAG 118131 || || ||| || | | || |||| || | ||| || |||| || || | Sbjct 26761 CG-AAGGCTCTTCGTGTCCGTGTACACCTGCTTGTGCTTGAGACCCAGGAACTGCTTGAT 26703 Query 118132 GTTGGAAAATTCCTCATTTTCCGTCACCTGTTTTATGGTGGCGTCCCGAACGTTGCGCGG 118191 ||| || || | ||||| || | || | |||| ||||| || |||||| || | Sbjct 26702 GTTCTGAATCTCTTGATTTTTTGTGATTTGGTCGATGGATGCGTCTCGCACGTTGAGCAG 26643 Query 118192 CTTACCCCGCAGTGGAAACACGCCAAACTTGTCACGGCCCA-CAACGCTCAAGCCGGCAA 118250 |||||| || |||||||| || || | |||| || ||| | |||| || | | Sbjct 26642 CTTACCACGGAGTGGAAAGACACCGATTCGGTCAGGGTCCAGGATGGCTC-GTCCAGACA 26584 Query 118251 TAGCAAGGGCCTTCGCCGAGTCACCCTCGGTAATAATAAGAGTGCACTCGGTGCTGCGAT 118310 || || | || || |||||||| ||||| | || || ||||||||| || ||| Sbjct 26583 CGGCCAGACCTTTGGCGGAGTCACCTTCGGTCAGGATGAGGGTGCACTCGTGGCCGCGCC 26524 Query 118311 GAGTACCGGCCCAATTAGCATCATCCAGCTT 118341 | || || ||| || || || ||||||| Sbjct 26523 GGGTGCCTGCCAGGTTGGCCTCGACCAGCTT 26493 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547209946423000