Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20parareesei_20[genbank_20GCA_5F001050175.1_202015-07- 08] 885 sequences; 32,070,663 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq736 342 6e-89 seq373 176 5e-39 seq877 152 6e-32 seq764 131 2e-25 seq804 109 6e-19 >seq736 Length=134049 Score = 342 bits (378), Expect = 6e-89 Identities = 1156/1771 (65%), Gaps = 77/1771 (4%) Strand=Plus/Minus Query 80032 GCCCGCGTCCGCAGATAGTACATGCCCGTCTTGAGGCCCTTCTTCCAGCCGTACAGGTGC 80091 ||| | || || || ||||||||||| |||||||| || |||||||||| | |||| Sbjct 48340 GCCTGGGTACGGAGGTAGTACATGCCGGTCTTGAGACCGAGCTTCCAGCCGGTGAAGTGC 48281 Query 80092 ATAGAACTGAGCTTCGCAAGTGTGGGGTTCTCCATGAAGATGTTCAGAGACTGAGACTGA 80151 || ||| ||| | | ||||||| || |||| |||||| || ||||| ||||| Sbjct 48280 ATGCTGGTGATCTTGCCCATCGTGGGGTCCTTCATGTGGATGTTTAGGGACTGGGACTGG 48221 Query 80152 CAGATGAAAGCCCCACGATCTGCCGCCATTTCAATAATT-GACTTTTGTGGAATTTCCCA 80210 ||||||||| |||||||| |||||||| | | ||| ||| | | | || ||||| Sbjct 48220 TCGATGAAAGCACCACGATCAGCCGCCATCTGGACGATTTGACGCT-GAGATATCTCCCA 48162 Query 80211 TACTGTACGATACA---CCTTACGAAGCTCCTCTGGAATGTCCAGATTTTGCACACTGCC 80267 || || |||| |||| || | ||||| || |||| || | | | || Sbjct 48161 GACGGTCTTGTACAGGGCCTT--GATG-TCCTCGGGGATGTTGGGAATGTTCTGGATGGA 48105 Query 80268 ACCGTCCTTTACAATTTGATTT--TTCAATTCA-GACGTCCAGACACCAAGCTTGTG--- 80321 |||| || |||| ||| ||| |||| | |||| |||| || || ||| Sbjct 48104 GCCGTTCTCGGCAAT--GATGCGGTTC--TTCATGGCGTC-AGACCACAGGCCGGTGTCG 48050 Query 80322 --CAGATCTTTCACAAGGT---GCTTGTTAATCATGACAAACTCTCCCGCGAGGGTGCGA 80376 ||| || || | ||| | ||| || | || |||| || || ||| || Sbjct 48049 ACCAGGTCCTTGAGAAGCCAAGGGTTGACAACCTGGA---ACTCACCAGCAAGGACACGT 47993 Query 80377 CGCAGATACAGGTTTGTAGTGTAAGGCTCAAATGCCTCGTTGTTTCCGAGGATCTGAGCC 80436 ||| | || | ||| | ||||| ||||| || |||||||| || || ||||||| Sbjct 47992 CGCTGGTAGATGTTGGAGGTGTAGGGCTCGAAGCATTCGTTGTTGCCCAGAATCTGAGAG 47933 Query 80437 GTGCTCGCCGTCGGCATCGGGCCGACCAACAGTGAATTCCGCAGGCCGTGCTTCTTGATA 80496 || || || || ||||| || |||| | || || || | ||||||| |||||| Sbjct 47932 GTACTGGCAGTGGGCATAGGAGCGACGAGCAAGCTGTTGCGGACACCGTGCTCCTTGATC 47873 Query 80497 TCCTC---GCGCAAATCTGAC---CAAAAATCAACCCCAACGCTGTGAC--CCCACATGT 80548 | ||| | | | || || || | || | ||| |||| ||||||||| Sbjct 47872 TGCTCCTTGAGGGAGTCCCACTCCCACAGGTCGG----AGGGCT-TGACGTCCCACATGT 47818 Query 80549 CGTGCTGCAAGATGCCCTCCGACGCCGGAGACCCCGCGAACGTCTCGTACGGGCCCTCCG 80608 ||| ||| | ||| ||||| || || || || ||| ||||| || || |||||||| Sbjct 47817 CGTACTGGAGGATACCCTCAGATGCAGGCGATCCCTTGAACGATTCATAGGGGCCCTCGA 47758 Query 80609 TCTTGGCCAGCTCACACGACTCCATAAGGGCCGCGTGATAAATGCACTCAAAGACGCCCT 80668 |||||| | ||| || | |||||| || || |||||| ||| |||| || Sbjct 47757 CCTTGGCAATCTCCATGGAAGCTTCAAGGGCGGCATGGTAAATGGTCTCGAAGATCTGCT 47698 Query 80669 TGTTCACACCGCGCGCCTGTGGGTCGTCGAACGACAAGCCCATCATCATGAACACGTCAG 80728 |||||| |||| |||| || || || | || | || | |||| |||||| Sbjct 47697 TGTTCAGCTCGCGAGCCTCGGGAGACTCAAAGGGCAGACGCAGAGCGAGGAACGCGTCAG 47638 Query 80729 CCAGGCCCTGAACGCCGATGGCGATCGGGCGGTGGCGCTTGTTCGATCGCTCG-GCCTCC 80787 | || ||||| || |||| |||| || ||||||||| |||| | | || |||||| Sbjct 47637 CAAGACCCTGGACACCGACACCGATAGGTCGGTGGCGCATGTT-GCTGTTGCGAGCCTCC 47579 Query 80788 GGAATTGGGTAAAAGTTATTATCGATGACGCGGTTCAGGTTGCGTGTAACAACCCGTGTA 80847 | ||||| ||| |||||||| |||||| |||||||| || ||| || Sbjct 47578 TCGACGGGGTAGTGGTTCACATCGATGATGCGGTTGAGGTTGCGGACGACCACCTTGGTG 47519 Query 80848 ACATCATGAAGTTTCTGAAAGTCGAATTGGTTCCCCTTC------ACAAATGCCGGAAGG 80901 || || ||||| |||| |||||| | | | | || ||||| || |||||| Sbjct 47518 ACTTCGTGAAGCTTCTTGAAGTCGTAGCAGCCCTCGTTGTAGTCGACAAAGGCGGGAAGG 47459 Query 80902 CTCAGGGACGCCAGATTGCACACGGCCACCTCTTCAG---CATCTGTAAACTCGACGATT 80958 ||| || |||| ||||| || || ||||| || | || | ||| ||| | ||| Sbjct 47458 GCCAGAGAGGCCAAGTTGCAGACAGCGACCTCGTCGGGGGCA-CAGTA--CTCAATGATC 47402 Query 80959 TCCGTGCACAAATTAGAAGACTTAATTGTACCCAGGTTTTTCTGGTTTGACTTGGCGTTG 81018 || ||||| | ||||| || || |||| ||| |||||||| |||| |||| Sbjct 47401 TCAGTGCAGAGGTTAGAGCTGCGGATGGTGCCCAAGTTCTTCTGGTTGCTCTTGCGGTTG 47342 Query 81019 CAAGCGTCCTTGTAGCACATGTACGGGGTACCGGTCTCGACCTGTGACTTGAGGATGGCG 81078 || ||||||||| |||| | ||| |||| |||||| ||| | || ||||||| | Sbjct 47341 CAGTGGTCCTTGTAAAGCATGAAGGGGTTACCAGTCTCGGTCTGGGCCTCCAGGATGGAG 47282 Query 81079 TCCCAAATCTCGCGCGCCTTGACCACCTTGCGGAATTTGCCTTCGGCCACATACTTGGCG 81138 | ||| | || | || || ||| || || || | | ||||| || Sbjct 47281 TACCACAGCTTCTGAGCACGGATGGTCTTACGACCACGTCCCTCCCTCTCGTACTTTTCG 47222 Query 81139 TAAGCTTCGTCGAACTTGGCACCGT-GAAGTTCAGTGAGGTCTGGGCACTCGTTAGGGCA 81197 || | || |||| | |||| | ||| ||| || | ||||| ||||| ||||| Sbjct 47221 TACAGAGCCTCAAACTCCTCGCCGTAGCAGT-CAGCAAGACCAGGGCATTCGTTGGGGCA 47163 Query 81198 CATCAGGTGCCAGTCGGTGTCGTTCTCTACAGCCTTCATGAAAGCGTCAGGGATCCAGAG 81257 ||| || |||||| || ||||| ||| ||||||||| || |||||||| || Sbjct 47162 CATGAGCGTCCAGTCCAAGTTCTTCTCGACACGCTTCATGAAGAGATCGGGGATCCACAG 47103 Query 81258 GGCGGTGAACAGGTCGCGGCAGCGCGCCTCCTCATCACCCTGGTTGAGGCGCAACTCGAG 81317 || ||||| ||||||| ||| ||||||| | || ||||| ||| | || || Sbjct 47102 AGCAAGGAACAAGTCGCGGGCGCGAACCTCCTCCTTGCCGTGGTTCTTGCGGAGATCAAG 47043 Query 81318 AAAGTCCATGATGTCCGCATGCCATGGCTCCAGATACACGGCGATCGACCCCTTGCGACG 81377 ||||| | || ||| || ||||| ||||| || || | ||| | | || |||| Sbjct 47042 GAAGTCAAAGACGTCGGCGTGCCAGGGCTCGAGGTAGATGGCAAAGGCACCAG---GACG 46986 Query 81378 ------GCCACCCTGGTTGACGTAACGGGCAGTCGCGTTAAATACACGCAACATAGGGAT 81431 ||||||||||| |||||| |||||||| ||| || || |||| ||| ||||| Sbjct 46985 CTTGTTGCCACCCTGGTCGACGTATCGGGCAGTGTTGTTGAAGACTCGCAGCATGGGGAT 46926 Query 81432 GATACCATCTGACTGACCGTTCGTACCCACGATACGCGACCCCTTGGCGCGCACCTTGCT 81491 || || | || ||||| || || |||| || || |||| || | ||| Sbjct 46925 AATGCCGTTGGAGGTGCCGTTGGTGCCGGCGATGTAGGAGCCAGTGGCACGGA---TGCG 46869 Query 81492 GATTGAA----AGACCGATGCCACCTGACCACTTTGAAATCTGAGCACACCGGTTCATGG 81547 | | || |||||||||||||| | | ||| |||||| |||||| |||| || Sbjct 46868 G-TGGACGTTCAGACCGATGCCACCAGCCATCTTGGAAATCATGGCACACGTCTTCAGGG 46810 Query 81548 TCTCATAAATTCCCTCGATGCTATCTTTTTTCATGTCAAGCAAGAAACAGCTTGACATCT 81607 | ||||| || ||||| ||||| || | |||||||| | || ||| || |||| || Sbjct 46809 TGTCATAGATACCCTCAATGCTGTCGTCCTTCATGTCCACCAGGAAGCATGAGGACAGCT 46750 Query 81608 GAGGGCTT--TTTGAGCCGGCATTGAACAGTGTTGGGGTCGCGTGAATGAAATAACGGTT 81665 |||||| | ||| |||||||| || || |||| ||||| |||| | | | Sbjct 46749 --GGGCTTGCGGGGTGCCAGCATTGAAGAGGGTAGGGGAGGCGTGGGTGAAGAACTTGCT 46692 Query 81666 TGACATCAGGTCATAGGTTTCCTTGACGCGTGGAATATCGTCACCGTGAATACCGATAGC 81725 ||||| |||| || || || ||| || ||| ||||| || || || | || Sbjct 46691 GGACATGAGGTGGTATGTCTCGAGGACACGCTCAATGTCGTCTCCCCAGATGCCAACGGC 46632 Query 81726 TACACGCATAAACATGTACTGGGGCGTCTCG 81756 || ||||||| ||||| || ||| |||| Sbjct 46631 CACTCGCATAATCATGTGTTGTGGCCGCTCG 46601 >seq373 Length=44988 Score = 176 bits (194), Expect = 5e-39 Identities = 168/215 (78%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 27418 GTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATTGCA 27477 |||||||| || ||||||||||| || ||||| ||||||||||| ||| | ||| | Sbjct 36157 GTCAAGACCCTGACCGGCAAGACGATCACTCTCGAGGTTGAGTCCTCTGACACCATCGAC 36216 Query 27478 AATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATT 27537 || | ||| | || || |||||||||||||| || ||||| |||||||||||||| || Sbjct 36217 AACGTCAAGTCCAAGATCCAGGACAAGGAGGGTATCCCTCCGGACCAGCAGCGTCTCATC 36276 Query 27538 TTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAA 27597 |||||||| ||||| || ||||| | || ||||| | ||||| || |||| ||||| Sbjct 36277 TTTGCTGGCAAGCAGCTTGAGGACGGCCGAACCCTCTCCGACTACAACATCCAGAAGGAG 36336 Query 27598 TCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 || || || || || ||| | |||||||||||||| Sbjct 36337 TCTACACTCCACCTTGTCCTCCGTCTTCGCGGTGG 36371 Score = 172 bits (190), Expect = 6e-38 Identities = 176/230 (77%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 27403 ATAATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCA 27462 || ||||| ||||| |||||||| || ||||||||||| || || || ||||| ||||| Sbjct 35856 ATCATGCAGATCTTCGTCAAGACCCTCACCGGCAAGACCATCACCCTCGAGGTCGAGTCG 35915 Query 27463 GGTGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGAC 27522 || | ||| | ||| ||||| | || || |||||||||||||| || ||||| ||| Sbjct 35916 TCCGACACCATCGACAATGTGAAGTCCAAGATCCAGGACAAGGAGGGTATCCCTCCGGAC 35975 Query 27523 CAGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTAT 27582 ||||||||||| || |||||||| ||||| || ||||| | || ||||| | ||||| Sbjct 35976 CAGCAGCGTCTCATCTTTGCTGGCAAGCAGCTTGAGGACGGCCGAACCCTCTCCGACTAC 36035 Query 27583 AATGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 || |||| ||||| || || || || || || | || ||||| ||||| Sbjct 36036 AACATCCAGAAGGAGTCTACCCTCCACCTGGTTCTCCGCCTTCGTGGTGG 36085 Score = 161 bits (178), Expect = 1e-34 Identities = 176/231 (76%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| |||||||| ||||| || || || ||||| |||||||| || || || ||| | Sbjct 36601 ATGCAGATCTTTGTTAAGACACTGACGGGTAAGACGATTACTCTGGAAGTGGAATCATCT 36660 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 |||| ||| | || | ||| | || ||||||||||||||||| || || || |||||| Sbjct 36661 GATACCATCGACAACGTCAAGTCGAAGATTCAGGACAAGGAGGGTATCCCGCCTGACCAG 36720 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCT-AGCAGACTATAA 27584 ||||| | || |||||||||||||| || || || | ||||||| | ||| ||||| || Sbjct 36721 CAGCGCTTGATCTTTGCTGGTAAGCAGCTGGAAGACGGTCGTACCTTGAGC-GACTACAA 36779 Query 27585 TGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGGACA 27635 |||| ||||| |||||| || || || | ||||| || ||||| || Sbjct 36780 CATCCAGAAGGAGAGCACTCTGCACCTGGTTCTCCGTCTCCGTGGTGGCCA 36830 Score = 156 bits (172), Expect = 5e-33 Identities = 173/228 (76%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| || || |||||||| || || || ||||| || || || ||||| |||||| | Sbjct 36373 ATGCAGATTTTCGTCAAGACCCTCACAGGAAAGACCATCACCCTGGAGGTCGAGTCATCT 36432 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 |||| |||| || | ||| | || ||||||||||||||||| |||||||| |||||| Sbjct 36433 GATACTATTGACAACGTCAAGTCCAAGATTCAGGACAAGGAGGGTATTCCTCCGGACCAG 36492 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCT-AGCAGACTATAA 27584 ||||| || ||||| ||||||||||| || || || | || || | ||| ||||| || Sbjct 36493 CAGCGCCTGATTTTCGCTGGTAAGCAGCTGGAAGACGGCCGCACTTTGAGC-GACTACAA 36551 Query 27585 TGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| ||||| ||| || || | ||| | |||||||| ||||| Sbjct 36552 CATCCAGAAGGAGAGCACCCTGCACTTGGTCCTCCGTCTTCGTGGTGG 36599 >seq877 Length=50207 Score = 152 bits (168), Expect = 6e-32 Identities = 172/228 (75%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| || || |||||||| || || || ||||| || || |||||||| ||||| Sbjct 31474 ATGCAGATTTTCGTCAAGACCCTCACGGGGAAGACGATCACCCTTGAGGTGGAGTCTTCC 31533 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||| | || | ||| | || ||||||||||||||||| || || || |||||| Sbjct 31534 GACACCATCGACAACGTCAAGTCCAAGATTCAGGACAAGGAGGGCATCCCCCCGGACCAG 31593 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCT-AGCAGACTATAA 27584 ||||| || || ||||| || ||||| |||||||||| || ||||| ||| ||||| || Sbjct 31594 CAGCGCCTGATCTTTGCCGGCAAGCAGCTCGAGGATGGCCGCACCCTGAGC-GACTACAA 31652 Query 27585 TGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| ||||| ||| || || || ||| |||| || || ||||| Sbjct 31653 CATCCAGAAGGAGAGCACCCTCCACCTGGTCCTGCGCCTGCGTGGTGG 31700 >seq764 Length=87966 Score = 131 bits (144), Expect = 2e-25 Identities = 138/182 (76%), Gaps = 0/182 (0%) Strand=Plus/Minus Query 27414 CTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCAT 27473 ||| || ||||| || || |||||||| || || |||||||| ||||| || | || Sbjct 48517 CTTCGTGAAGACCCTGACGGGCAAGACCATCACCCTTGAGGTCGAGTCCTCCGACACGAT 48458 Query 27474 TGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCT 27533 | ||| | ||| | || || |||||||||||||| ||||| || ||||||||||| | Sbjct 48457 CGACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGCATTCCCCCGGACCAGCAGCGATT 48398 Query 27534 AATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAA 27593 || || ||||||||||| |||||||||| || ||||| | ||||| || |||| || Sbjct 48397 GATCTTCGCTGGTAAGCAGCTCGAGGATGGCCGAACCCTGTCCGACTACAACATCCAGAA 48338 Query 27594 GG 27595 || Sbjct 48337 GG 48336 >seq804 Length=175399 Score = 109 bits (120), Expect = 6e-19 Identities = 148/206 (72%), Gaps = 3/206 (1%) Strand=Plus/Minus Query 64663 AAAAAGGCTGAATGGGCCATCCGGTGGATGAATCGTGGG---TCGTCGTTTGGTCAGCGT 64719 || |||||||| ||||| || || ||||| | | ||||| |||| |||||| Sbjct 35353 AAGAAGGCTGACTGGGCGATTCGATGGATCCAGGACAAGAACTCGTCCTTTGCCCAGCGT 35294 Query 64720 CTCGCAGCTTTTGCCTGTGTGGAAGGAATTTTCTTTTCTGGGTCATTCTGTTCTATTTTC 64779 |||| || |||||| ||| || || || ||||| || | || || |||||| Sbjct 35293 CTCGTTGCCTTTGCCGCTGTCGAGGGTATCTTCTTCAGCGGTGCCTTTGCCTCCATTTTC 35234 Query 64780 TGGCTAAAAAAGCGGGGCCTGATGCCAGGTCTGTCGTTTTCGAACGAGCTGATCTCTCGG 64839 ||||| || ||||| || || ||||| || ||| | ||||| |||||||| |||||||| Sbjct 35233 TGGCTCAAGAAGCGAGGTCTCATGCCCGGCCTGACCTTTTCCAACGAGCTCATCTCTCGT 35174 Query 64840 GACGAGGGGCTCCACCAAGAATTTGC 64865 |||||||| || ||| || ||||| Sbjct 35173 GACGAGGGTCTGCACACGGACTTTGC 35148 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570304090941200