Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20parareesei_20[genbank_20GCA_5F001050175.1_202015-07- 08] 885 sequences; 32,070,663 total letters Query= NC_028461.1 Length=127011 Score E Sequences producing significant alignments: (Bits) Value seq371 114 1e-20 seq510 82.4 6e-11 >seq371 Length=49181 Score = 114 bits (126), Expect = 1e-20 Identities = 150/205 (73%), Gaps = 2/205 (1%) Strand=Plus/Plus Query 29839 GGGAAAGGGTCTGGGCTCCCTCTCGAGCTGAGTCTTCAGCGGTTCCACGTTATCCAGGTA 29898 ||| || || | ||||| | ||||||||| |||| ||| | || | || || | ||| Sbjct 9280 GGGGAACGGCCGCGGCTCGCGCTCGAGCTGTGTCTGCAGGGCCTCGATGTGGTCGATGTA 9339 Query 29899 GACGTGAGCGTCTCCCAGGTTGTGGACAAA-CTCTCCCGGTTCTAGCCCGGTGACGTGAG 29957 |||||| |||||||||| | |||| | ||| ||||| | || || ||||| | Sbjct 9340 GACGTGCGCGTCTCCCATGACGTGGGTGAGGCTC-CCCGGCACCAGATCGCACACGTGGG 9398 Query 29958 CCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGTACCCCGAGCCCCATGT 30017 | | ||||| |||||| || | |||||| || ||||| ||||| | ||||||||||||| Sbjct 9399 CGAGCATGTGCGTGAGCAGCGCGTAGCTCGCAATGTTGAAGGGGATGCCGAGCCCCATGT 9458 Query 30018 CCCCCGACCTCTGGTAGAGCTGACA 30042 | | |||| |||||| ||||| || Sbjct 9459 CGCAGGACCGCTGGTACAGCTGGCA 9483 Score = 100 bits (110), Expect = 2e-16 Identities = 190/274 (69%), Gaps = 8/274 (3%) Strand=Plus/Plus Query 30187 CAGCTGATCCACCCCCATCCCCGAGTAGTCTGCCCTCATGTCCGTGTACTCTGCTCCGAA 30246 |||||| || || ||| | || | |||||| | | ||| |||||| || || || Sbjct 9685 CAGCTGGTCGACGCCCTTGCCGGCGTAGTCGGTGTTGGCGTCGACGTACTCGGCGCCAAA 9744 Query 30247 ATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCTGTGCTCGAAGCC 30306 |||| ||||||||| ||||| || || |||||||| || | || | |||| | | ||| Sbjct 9745 GTGCCGCCACTGGAAGCCGTAGACGGGGCCCAGGTCGCCGACGTCGCGGTGCGCCAGGCC 9804 Query 30307 CCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTTTACCCC--CTTCTCA 30364 |||| | || || | ||| |||||| ||||||||||||| || || | || | Sbjct 9805 GACGCTGTCGAGGAACTCGCGGGAGCCGTTGCCGTCCCAGATCTTGACGCCGACGTCGCT 9864 Query 30365 GAGAGCTCTTTG--GAGTTTGTGGACCCTCTGACGAACCACAGCAGCTCCTCCACGACGG 30422 ||| || ||| | ||| | || ||||| || |||||| || ||||| | | ||||| Sbjct 9865 GAGGGC-CTTGGATGAGGTGTTG--CCCTC-GATGAACCAGAGGAGCTCGGCGATGACGG 9920 Query 30423 CCTTCCAAAAGACCCTCTTGGTCGTGAGGAGGGG 30456 | ||||| | ||| || ||||||||||| Sbjct 9921 CGCGGAGGAAGACGCGCTTCGTGGTGAGGAGGGG 9954 >seq510 Length=17648 Score = 82.4 bits (90), Expect = 6e-11 Identities = 108/145 (74%), Gaps = 6/145 (4%) Strand=Plus/Minus Query 52765 AGATGGGCGACAAGTTTGCGTCGT-TCACGGCGCAAAAGGGGACGTGCGGAGCCGTCCTG 52823 |||| || |||||||||||||| |||||| |||||||| || || | | || Sbjct 13825 AGATTGGTGACAAGTTTGCGTCTCGTCACGGA-CAAAAGGGCACTATTGGTGTCA--CTT 13769 Query 52824 ACC--CAGGAGGACATGCCCTTCGACAAGGACGGGGTGGTGCCCGACCTCATCATCAACC 52881 ||| |||||||||||||| ||| || || || | ||||||| |||||||||||| Sbjct 13768 ACCGGCAGGAGGACATGCCGTTCACCAGAGAGGGAATTACGCCCGACATCATCATCAACC 13709 Query 52882 CCCACGCCTTTCCCTCCAGGATGAC 52906 |||||||| |||| || | ||||| Sbjct 13708 CCCACGCCATTCCGTCTCGTATGAC 13684 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 406306017561420