Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20parareesei_20[genbank_20GCA_5F001050175.1_202015-07- 08] 885 sequences; 32,070,663 total letters Query= NC_029132.1 Length=140122 Score E Sequences producing significant alignments: (Bits) Value seq371 114 1e-20 >seq371 Length=49181 Score = 114 bits (126), Expect = 1e-20 Identities = 157/213 (74%), Gaps = 6/213 (3%) Strand=Plus/Plus Query 6500 AGCTGGGGGAACGGTCGGGGCTCTCGTTGCAGCTGGATCCGGAGCCGCTCGATGTGGTTC 6559 |||| ||||||||| || ||||| || | ||||| || | || ||||||||||| Sbjct 9275 AGCTCGGGGAACGGCCGCGGCTCGCGCTCGAGCTGTGTCTGCAGGGCCTCGATGTGGTCG 9334 Query 6560 AGGTAGATATGCGCATCCCCCA--ACGTATGCACCAGCTCCCCAGGAACCA-ACCCCACG 6616 | ||||| ||||| || |||| |||| | ||||||| || |||| | | ||| Sbjct 9335 ATGTAGACGTGCGCGTCTCCCATGACGTGGGTGAG-GCTCCCC-GGCACCAGATCGCAC- 9391 Query 6617 ACATGAGCGATCATGTACGTGAGCAGAGCGTAACTAGCAATGTTGAACGGCACCCCTAAC 6676 || || |||| ||||| ||||||||| ||||| || ||||||||||| || | || | | Sbjct 9392 ACGTGGGCGAGCATGTGCGTGAGCAGCGCGTAGCTCGCAATGTTGAAGGGGATGCCGAGC 9451 Query 6677 CCCATGTCTCCCGATCGTTGATAGAGCTGGCAG 6709 |||||||| | || || || || ||||||||| Sbjct 9452 CCCATGTCGCAGGACCGCTGGTACAGCTGGCAG 9484 Score = 114 bits (126), Expect = 1e-20 Identities = 157/213 (74%), Gaps = 6/213 (3%) Strand=Plus/Minus Query 34636 CTGCCAGCTCTATCAACGATCGGGAGACATGGGGTTAGGGGTGCCGTTCAACATTGCTAG 34695 ||||||||| || || || || | ||||||||| | || | || ||||||||||| || Sbjct 9484 CTGCCAGCTGTACCAGCGGTCCTGCGACATGGGGCTCGGCATCCCCTTCAACATTGCGAG 9425 Query 34696 TTACGCTCTGCTCACGTACATGATCGCTCATGTCGTGGGGT-TGGTTCCTGGGGAGCTGG 34754 ||||| ||||||||| ||||| |||| || || ||| | | |||| || ||||||| Sbjct 9424 CTACGCGCTGCTCACGCACATGCTCGCCCACGT-GTGCGATCTGGTGCC-GGGGAGC-CT 9368 Query 34755 TGCATACGT--TGGGGGATGCGCATATCTACCTGAACCACATCGAGCGGCTCCGGATCCA 34812 | |||| |||| || ||||| ||||| | ||||||||||| || | || || Sbjct 9367 CACCCACGTCATGGGAGACGCGCACGTCTACATCGACCACATCGAGGCCCTGCAGACACA 9308 Query 34813 GCTGCAACGAGAGCCCCGACCGTTCCCCCAGCT 34845 ||| | || ||||| || ||||||||| |||| Sbjct 9307 GCTCGAGCGCGAGCCGCGGCCGTTCCCCGAGCT 9275 Score = 91.5 bits (100), Expect = 1e-13 Identities = 207/305 (68%), Gaps = 10/305 (3%) Strand=Plus/Plus Query 6724 CGCGACGTAGAATTGGCAGAGGGTGTGGCACGGGGGGAGCGCCATCAGAGGGAGATCCTT 6783 || ||||||||| ||| || ||||||| || ||||| ||||| | || Sbjct 9556 CGAGACGTAGAACTGGGCGAACATGTGGCAGGGCGGGAGGGCCATTTTCTTAAAGTCGCG 9615 Query 6784 CGGGTTCCACGCGCACATCACGATCCTTCTGTCATCAGGGTTC---CGCTTCAAGGTGTC 6840 |||||||||||||| | | |||| ||||||| |||||| ||| | | | | Sbjct 9616 CGGGTTCCACGCGCTGAGTATCATCCGCCTGTCATACGGGTTCGTGCGCAGCTTGTGGAC 9675 Query 6841 GATCACGTACTGCAGCTGGTCCGCTCCCTGTCCCGAATAGTCCGC-TTCGCTCCCCCGAT 6899 |||| || | |||||||| | |||| || | ||||| | || || | || | Sbjct 9676 GATCTCGGCC---AGCTGGTCGACGCCCTTGCCGGCGTAGTCGGTGTTGGCGTCGACG-T 9731 Query 6900 ACTCCGCCCCAAAGTGTCTCCACTGGAACCCGTAGACCGGGCCCAAGTCGCCCTCCTCCC 6959 |||| || |||||||| | ||||||||| |||||||| ||||||| |||||| | || | Sbjct 9732 ACTCGGCGCCAAAGTGCCGCCACTGGAAGCCGTAGACGGGGCCCAGGTCGCCGACGTCGC 9791 Query 6960 GAGATGGGAACCCC-CGCTTGTCCAGAAAGTCTCGAGACCCGTGAGCGTCCCAGATCTTC 7018 | | | || |||| ||| || || || || || |||| ||||||||||||| Sbjct 9792 GGTGCGCCAGGCCGACGCT-GTCGAGGAACTCGCGGGAGCCGTTGCCGTCCCAGATCTTG 9850 Query 7019 ACCCC 7023 || || Sbjct 9851 ACGCC 9855 Score = 91.5 bits (100), Expect = 1e-13 Identities = 207/305 (68%), Gaps = 10/305 (3%) Strand=Plus/Minus Query 34322 GGGGTGAAGATCTGGGACGCTCACGGGTCTCGAGACTTTCTGGACAAGCG-GGGGTTCCC 34380 || || ||||||||||||| |||| || || || || || ||| |||| || | | Sbjct 9855 GGCGTCAAGATCTGGGACGGCAACGGCTCCCGCGAGTTCCTCGAC-AGCGTCGGCCTGGC 9797 Query 34381 ATCTCGGGAGGAGGGCGACTTGGGCCCGGTCTACGGGTTCCAGTGGAGACACTTTGGGGC 34440 || || | |||||| ||||||| |||||||| ||||||||| | |||||||| || Sbjct 9796 GCACCGCGACGTCGGCGACCTGGGCCCCGTCTACGGCTTCCAGTGGCGGCACTTTGGCGC 9737 Query 34441 GGAGTATCGGGGGAGCGAA-GCGGACTATTCGGGACAGGGAGCGGACCAGCTGCAGTACG 34499 ||||| || | || || | ||||| | || |||| | |||||||| | || Sbjct 9736 CGAGTA-CGTCGACGCCAACACCGACTACGCCGGCAAGGGCGTCGACCAGCT---GGCCG 9681 Query 34500 TGATCGACACCTTGAAGCG---GAACCCTGATGACAGAAGGATCGTGATGTGCGCGTGGA 34556 ||||| | | | ||| |||||| ||||||| |||| | | ||||||||| Sbjct 9680 AGATCGTCCACAAGCTGCGCACGAACCCGTATGACAGGCGGATGATACTCAGCGCGTGGA 9621 Query 34557 ACCCGAAGGATCTCCCTCTGATGGCGCTCCCCCCGTGCCACACCCTCTGCCAATTCTACG 34616 ||||| || | ||||| ||||| || ||||||| || ||| ||||||| Sbjct 9620 ACCCGCGCGACTTTAAGAAAATGGCCCTCCCGCCCTGCCACATGTTCGCCCAGTTCTACG 9561 Query 34617 TCGCG 34621 || || Sbjct 9560 TCTCG 9556 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448257441097200