Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20parareesei_20[genbank_20GCA_5F001050175.1_202015-07- 08] 885 sequences; 32,070,663 total letters Query= NC_029996.1 Length=134272 Score E Sequences producing significant alignments: (Bits) Value seq877 89.7 4e-13 seq373 87.8 2e-12 >seq877 Length=50207 Score = 89.7 bits (98), Expect = 4e-13 Identities = 149/213 (70%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 39076 ACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCA 39135 |||| || || |||||||| || || || || || ||| || || || | || || Sbjct 31682 ACCAGGTGGAGGGTGCTCTCCTTCTGGATGTTGTAGTCGCTCAGGGTGCGGCCATCCTCG 31623 Query 39136 AGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATG 39195 ||||| ||||| ||||| || || ||||||||||| | ||| | || ||| |||||| Sbjct 31622 AGCTGCTTGCCGGCAAAGATCAGGCGCTGCTGGTCCGGGGGGATGCCCTCCTTGTCCTGA 31563 Query 39196 ATTTTCTGTTTGAGCGTCG-CCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTT 39254 || || |||| ||| | | | || ||| |||||||| || | ||||| | || Sbjct 31562 ATCTTGGACTTGA-CGTTGTCGATGGTGTCGGAAGACTCCACCTCAAGGGTGATCGTCTT 31504 Query 39255 TCCCGTCAGCGTTTTAACAAAGATTTGCATCTT 39287 ||||| || || || || || || |||||||| Sbjct 31503 CCCCGTGAGGGTCTTGACGAAAATCTGCATCTT 31471 >seq373 Length=44988 Score = 87.8 bits (96), Expect = 2e-12 Identities = 149/211 (71%), Gaps = 4/211 (2%) Strand=Plus/Minus Query 39076 ACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGG-CAAGTGTTCGTTCGTCATC 39134 |||| || || |||||||| || || || || || ||| |||| || || |||| || Sbjct 36809 ACCAGGTGCAGAGTGCTCTCCTTCTGGATGTTGTAGTCGCTCAAG-GTACGACCGTCTTC 36751 Query 39135 AAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCAT 39194 ||||| || || ||||| || | ||||||||||| | || | | ||| |||||| Sbjct 36750 CAGCTGCTTACCAGCAAAGATCAAGCGCTGCTGGTCAGGCGGGATACCCTCCTTGTCCTG 36691 Query 39195 GATTTTCTGTTTGAGCGTCG-CCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTT 39253 || ||| |||| ||| | | | ||||| || ||||| |||| || || | | Sbjct 36690 AATCTTCGACTTGA-CGTTGTCGATGGTATCAGATGATTCCACTTCCAGAGTAATCGTCT 36632 Query 39254 TTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 | |||||||| || ||||||||||| ||||| Sbjct 36631 TACCCGTCAGTGTCTTAACAAAGATCTGCAT 36601 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429540966948005