Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20parareesei_20[genbank_20GCA_5F001050175.1_202015-07- 08] 885 sequences; 32,070,663 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value seq373 143 6e-29 seq1 134 3e-26 seq764 129 1e-24 seq877 122 2e-22 >seq373 Length=44988 Score = 143 bits (158), Expect = 6e-29 Identities = 151/199 (76%), Gaps = 0/199 (0%) Strand=Plus/Minus Query 225493 CGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTT 225552 ||||| | |||||||||||||| || || || || |||| ||||| |||| | ||| Sbjct 36365 CGAAGACGGAGGACAAGGTGGAGTGTAGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTT 36306 Query 225553 CTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCT 225612 | || || || |||||||| ||||| ||||| || || || ||||| || || ||||| Sbjct 36305 CGGCCGTCCTCAAGCTGCTTGCCAGCAAAGATGAGACGCTGCTGGTCCGGAGGGATACCC 36246 Query 225613 TCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAAC 225672 |||||||| |||||||| ||| || ||||||||||| |||| || || || | Sbjct 36245 TCCTTGTCCTGGATCTTGGACTTGACGTTGTCGATGGTGTCAGAGGACTCAACCTCGAGA 36186 Query 225673 GTGATCGTCTTGCCCGTCA 225691 |||||||||||||| |||| Sbjct 36185 GTGATCGTCTTGCCGGTCA 36167 Score = 134 bits (148), Expect = 3e-26 Identities = 163/222 (73%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 |||||| | || || |||||||| || || || || |||| ||||| |||| | || Sbjct 36080 ACGAAGGCGGAGAACCAGGTGGAGGGTAGACTCCTTCTGGATGTTGTAGTCGGAGAGGGT 36021 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 || || || || |||||||| ||||| ||||| || || || ||||| || || ||||| Sbjct 36020 TCGGCCGTCCTCAAGCTGCTTGCCAGCAAAGATGAGACGCTGCTGGTCCGGAGGGATACC 35961 Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671 |||||||| |||||||| ||||||| ||||||||||| || | || || || | Sbjct 35960 CTCCTTGTCCTGGATCTTGGACTTCACATTGTCGATGGTGTCGGACGACTCGACCTCGAG 35901 Query 225672 CGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 ||||| |||||||| || | || || | ||| | ||||| Sbjct 35900 GGTGATGGTCTTGCCGGTGAGGGTCTTGACGAAGATCTGCAT 35859 >seq1 Length=45472 Score = 134 bits (148), Expect = 3e-26 Identities = 203/283 (72%), Gaps = 7/283 (2%) Strand=Plus/Minus Query 7447 TATTTAATATTTGGTGGCTTTTCTGGTATTAT-AGGTACTATATTTTCTATGATTATAAG 7505 ||||||||||||| ||||| || ||||| ||| || ||||| | | ||||| Sbjct 39148 TATTTAATATTTGCCCTATTTTCAGG-ATTATTAGGAACAGCCTTTTCAGTATTAATAAG 39090 Query 7506 GTTAGAA-TTAGCTGCTCCGGGTTCTCAAATATTGAGTGGTAATAGCCAACTTTACAACG 7564 |||||| |||| | | ||| | |||| || | || |||| |||| | || ||| Sbjct 39089 ATTAGAACTTAGTGGACCTGGGGT-TCAA---TTTATTGCAAATAACCAATTATATAACA 39034 Query 7565 TTATTATTACGGCGCATGCCTTTGTTATGATTTTCTTTTTTGTTATGCCGGTTATGATAG 7624 |||||| || || || ||| || | ||||| |||||| | |||||||| | | |||| Sbjct 39033 GTATTATAACAGCTCACGCCATTTTAATGATATTCTTTATGGTTATGCCAGCATTAATAG 38974 Query 7625 GCGGTTTCGGAAATTGATTCGTTCCTTTAATGATTGGTGCTCCTGATATGGCTTTTCCAA 7684 | || || ||||||| | | ||||||||||| || | ||||||||||| || || | Sbjct 38973 GAGGATTTGGAAATTTTCTAATGCCTTTAATGATAGGAGGACCTGATATGGCATTCCCTA 38914 Query 7685 GGCTTAACAATATAAGTTTTTGATTACTACCGCCTTCCTTATT 7727 | | || ||||| ||||| ||||||||||||||| ||||| Sbjct 38913 GATTAAATAATATTAGTTTCTGATTACTACCGCCTAGTTTATT 38871 >seq764 Length=87966 Score = 129 bits (142), Expect = 1e-24 Identities = 136/179 (76%), Gaps = 0/179 (0%) Strand=Plus/Plus Query 225526 TTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATA 225585 || |||| ||||| |||| || |||| ||||| || |||||||| ||||||||||| Sbjct 48338 TTCTGGATGTTGTAGTCGGACAGGGTTCGGCCATCCTCGAGCTGCTTACCAGCGAAGATC 48397 Query 225586 AGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCG 225645 | ||| || ||||| || ||||| || |||||||| |||||||| ||| ||| ||| Sbjct 48398 AATCGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCG 48457 Query 225646 ATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTCAAAGTTTTTATGAA 225704 || ||||| |||| || || || | ||||| ||||||||||||| || || | ||| Sbjct 48458 ATCGTGTCGGAGGACTCGACCTCAAGGGTGATGGTCTTGCCCGTCAGGGTCTTCACGAA 48516 >seq877 Length=50207 Score = 122 bits (134), Expect = 2e-22 Identities = 162/225 (72%), Gaps = 0/225 (0%) Strand=Plus/Minus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 ||| || | |||||| |||||||| ||| || || |||| ||||| ||| || || Sbjct 31695 ACGCAGGCGCAGGACCAGGTGGAGGGTGCTCTCCTTCTGGATGTTGTAGTCGCTCAGGGT 31636 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 | ||||| || |||||||| || || ||||| || || || ||||| || || || || Sbjct 31635 GCGGCCATCCTCGAGCTGCTTGCCGGCAAAGATCAGGCGCTGCTGGTCCGGGGGGATGCC 31576 Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671 |||||||| || ||||| ||| || ||||||||||| || | ||||| || | Sbjct 31575 CTCCTTGTCCTGAATCTTGGACTTGACGTTGTCGATGGTGTCGGAAGACTCCACCTCAAG 31516 Query 225672 CGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCATTTT 225716 ||||||||||| ||||| | || || | ||| | ||||| || Sbjct 31515 GGTGATCGTCTTCCCCGTGAGGGTCTTGACGAAAATCTGCATCTT 31471 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1192517677814190