Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20parareesei_20[genbank_20GCA_5F001050175.1_202015-07- 08] 885 sequences; 32,070,663 total letters Query= NC_030656.1 Length=133492 Score E Sequences producing significant alignments: (Bits) Value seq804 154 1e-32 >seq804 Length=175399 Score = 154 bits (170), Expect = 1e-32 Identities = 550/849 (65%), Gaps = 23/849 (3%) Strand=Plus/Plus Query 4257 TTTTGGTATTCGGATACTCGCTTTTCGAAGAAATTAGTTTTGCCTTCTAACGAAATATTT 4316 || ||||| |||| || ||||| || ||||| || || ||||| | | ||||| || Sbjct 34854 TTCTGGTAGTCGGCGACGCGCTTCTCAAAGAAGTTGGTCTTGCCGCCCAGGGAAATGTTC 34913 Query 4317 TCCATAAAATCAAACGGATTAGTTGCGTTGTAATGTTTTTCACACTTTAGAGCTACAAGC 4376 |||||||| ||||| || || | | ||||| || || |||||||| ||| Sbjct 34914 TCCATAAAGTCAAAGGGGTTGGACGACTTGTACACCTTCTCGTTGCCGAGAGCTACCAGC 34973 Query 4377 AATCGGTCAGCTACAAATTCTATATACTGGCTCATGAGTTCGCAGTTAATTCCAATTAAT 4436 | ||||| || ||||| || || ||||| ||||||| | | |||| || || | | Sbjct 34974 AGGCGGTCGGCGACAAACTCAATGTACTGCTTCATGAGGTTGGAGTTCATGCCCAGCAGG 35033 Query 4437 -CTCACAGGTAGCGCGTATGTCAAAAACTCTTGTTCTATAGTTACGGCTTCTGTGATTAT 4495 | || ||| || || | ||||||||||| || || || ||||| || ||||| || Sbjct 35034 GCGCA-AGGCAGAGCTTCGGTCAAAAACTCCTGCTCGATGCGGACGGCGTCGGTGATGAT 35092 Query 4496 ATCTTTTATTTTATCTTTAGATGGT----TTATTTAC-TAAGTATCCAAACAATAAACAC 4550 || || || || | ||| || || | | || | || | || Sbjct 35093 GTCACGAATCACCTCCTT-GCTGGCGCGGTTCTTCAGGTGAGAGTGCAGC----AGGCAG 35147 Query 4551 GCAAAATCACAATGCAAACCTTCGTCTCTGCTAATCAGTTCGTTAGAAAACGTTAATCCG 4610 ||||| || |||| ||| ||||| | || || ||||| ||||| || | ||| Sbjct 35148 GCAAAGTCCGTGTGCAGACCCTCGTCACGAGAGATGAGCTCGTTGGAAAAGGTCAGGCCG 35207 Query 4611 GGCATTAAACCTCTCTTTTTAAGCCAAAATATAGCGGCAAATGACCCAGAAAAGAATATG 4670 ||||| | ||||| ||| || ||||| || || | |||||| | || ||||| || Sbjct 35208 GGCATGAGACCTCGCTTCTTGAGCCAGAAAATGGAGGCAAAGGCACCGCTGAAGAAGATA 35267 Query 4671 CCTTCTACGGCGGCAAACGCTACTAATCG---GGACCCGAACGAGCTGGCTTTGTCTTTA 4727 || || || |||||||| || || | || || | ||||| | ||||| | Sbjct 35268 CCCTCGACAGCGGCAAAGGCAACGAGACGCTGGGCAAAGGACGAGTTC---TTGTCCTGG 35324 Query 4728 ATCCATTTTAATGCCCAGTTAGCTTTTTTCTTAACGCACGGAATTGTGTATATAGCGTTA 4787 |||||| | ||||||| ||| || || || ||| ||||| || | || ||||| Sbjct 35325 ATCCATCGAATCGCCCAGTCAGCCTTCTTGCGAATGCAAGGAATGGTCTCAATGGCGTTG 35384 Query 4788 AATAATTTACTTTTTTCAAATGGG-TCTTGAATATAAGTGTCTATTAGTAGGCTATACAT 4846 || | | | || || | || | ||||||||||| || || ||| ||| | Sbjct 35385 AAGAGGT-AGTTGCGCTGGCTGTGCTCCTTGATATAAGTGTCGATGAGCAGGGAGTACGT 35443 Query 4847 TTCAGAATGTATATTTTCTATAGCAATCTGAAATCCGTAAAAGCATCTAGCTTCTGTTAC 4906 || || || || || || || ||||| || ||||||||||| | ||| || | | Sbjct 35444 CTCGGAGTGGATGTTCTCCATCATGATCTGGAAGCCGTAAAAGCAGCGAGCCTCGGGGAT 35503 Query 4907 TTGAACTTCGTTACAAAATCTTTCTACTAAGTTTTCGTTTACTATACCGTCACTGGCTGC 4966 || || ||| | || | || || | ||| ||||| || || ||||| ||| || Sbjct 35504 CTGGACCTCGCCGCTGAAGCGCTCGACCAGGTTCTCGTTGACAATGCCGTCCGAGGCGGC 35563 Query 4967 AAAAAACGCCAAAACATGAGATATAAAGTACTGTTCGTCAGGCTTAA---GTTTTTTCCA 5023 || || |||| | ||||| || ||||||| |||||| || | | || ||||| Sbjct 35564 GAAGAAGGCCAGGATGTGAGAGATGAAGTACTTCTCGTCATCGTTCAGGCGGTTGTTCCA 35623 Query 5024 GTGGGGCAAATCTTTAGTTAAATCAACTTCTTCAACAGTCCAAAACGACGCTTCCGCTTT 5083 || | ||| || || | | |||| || || | ||||| || || || || || || Sbjct 35624 GTCGTGCAGGTCCTTGGACAGGTCAATCTCCTCGGCGGTCCAGAAGGAAGCCTCGGCCTT 35683 Query 5084 TTTGTACAT 5092 ||||||||| Sbjct 35684 TTTGTACAT 35692 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 427044993869705