Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20parareesei_20[genbank_20GCA_5F001050175.1_202015-07- 08] 885 sequences; 32,070,663 total letters Query= NC_030842.1 Length=115510 Score E Sequences producing significant alignments: (Bits) Value seq371 120 2e-22 seq510 96.9 3e-15 >seq371 Length=49181 Score = 120 bits (132), Expect = 2e-22 Identities = 151/205 (74%), Gaps = 2/205 (1%) Strand=Plus/Plus Query 27105 GGGAAAGGGTCTGGGCTCCCTCTCGAGCTGAGTCTTCAGCGGTTCCACGTGATCCAGGTA 27164 ||| || || | ||||| | ||||||||| |||| ||| | || | ||| || | ||| Sbjct 9280 GGGGAACGGCCGCGGCTCGCGCTCGAGCTGTGTCTGCAGGGCCTCGATGTGGTCGATGTA 9339 Query 27165 GACGTGAGCGTCTCCCAGGGTGTGGACAAA-CTCTCCCGGTTCTAGCCCGGTGACGTGAG 27223 |||||| |||||||||| | |||| | ||| ||||| | || || ||||| | Sbjct 9340 GACGTGCGCGTCTCCCATGACGTGGGTGAGGCTC-CCCGGCACCAGATCGCACACGTGGG 9398 Query 27224 CCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGTACCCCGAGCCCCATGT 27283 | | ||||| |||||| || | |||||| || ||||| ||||| | ||||||||||||| Sbjct 9399 CGAGCATGTGCGTGAGCAGCGCGTAGCTCGCAATGTTGAAGGGGATGCCGAGCCCCATGT 9458 Query 27284 CCCCCGACCTCTGGTAGAGCTGACA 27308 | | |||| |||||| ||||| || Sbjct 9459 CGCAGGACCGCTGGTACAGCTGGCA 9483 Score = 91.5 bits (100), Expect = 1e-13 Identities = 161/229 (70%), Gaps = 8/229 (3%) Strand=Plus/Plus Query 27498 GTACTCTGCTCCGAAATGCCTCCATTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTC 27557 |||||| || || || |||| ||| ||||| ||||| || || |||||||| || | || Sbjct 9730 GTACTCGGCGCCAAAGTGCCGCCACTGGAAGCCGTAGACGGGGCCCAGGTCGCCGACGTC 9789 Query 27558 CCTGTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTT 27617 | |||| | | ||| |||| | || || | ||| |||||| ||||||||||||| Sbjct 9790 GCGGTGCGCCAGGCCGACGCTGTCGAGGAACTCGCGGGAGCCGTTGCCGTCCCAGATCTT 9849 Query 27618 TACCCC--CTTCTCGGAGAGCTCTTTG--GAGTTTGTGGACCCTCTGACGAACCACAGCA 27673 || || | || | ||| || ||| | ||| | || ||||| || |||||| || | Sbjct 9850 GACGCCGACGTCGCTGAGGGC-CTTGGATGAGGTGTTG--CCCTC-GATGAACCAGAGGA 9905 Query 27674 GCTCCTCCACGACGGCCTTCCAAAAGACCCTCTTGGTCGTGAGGAGGGG 27722 |||| | | |||||| ||||| | ||| || ||||||||||| Sbjct 9906 GCTCGGCGATGACGGCGCGGAGGAAGACGCGCTTCGTGGTGAGGAGGGG 9954 >seq510 Length=17648 Score = 96.9 bits (106), Expect = 3e-15 Identities = 111/145 (77%), Gaps = 6/145 (4%) Strand=Plus/Minus Query 48545 AGATGGGTGACAAGTTTGCGTC-CTTCACGGCGCAAAAGGGGACATGTGGAGCCGTCCTG 48603 |||| ||||||||||||||||| | |||||| |||||||| || ||| | | || Sbjct 13825 AGATTGGTGACAAGTTTGCGTCTCGTCACGGA-CAAAAGGGCACTATTGGTGTCA--CTT 13769 Query 48604 ACC--CAGGAGGACATGCCCTTCGACAAGGACGGGGTGGTGCCCGACCTCATCATCAACC 48661 ||| |||||||||||||| ||| || || || | ||||||| |||||||||||| Sbjct 13768 ACCGGCAGGAGGACATGCCGTTCACCAGAGAGGGAATTACGCCCGACATCATCATCAACC 13709 Query 48662 CCCACGCCTTTCCCTCCAGGATGAC 48686 |||||||| |||| || | ||||| Sbjct 13708 CCCACGCCATTCCGTCTCGTATGAC 13684 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 369503214518435