Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichoderma_20parareesei_20[genbank_20GCA_5F001050175.1_202015-07-
08] 885 sequences; 32,070,663 total letters
Query= NC_030842.1
Length=115510
Score E
Sequences producing significant alignments: (Bits) Value
seq371 120 2e-22
seq510 96.9 3e-15
>seq371
Length=49181
Score = 120 bits (132), Expect = 2e-22
Identities = 151/205 (74%), Gaps = 2/205 (1%)
Strand=Plus/Plus
Query 27105 GGGAAAGGGTCTGGGCTCCCTCTCGAGCTGAGTCTTCAGCGGTTCCACGTGATCCAGGTA 27164
||| || || | ||||| | ||||||||| |||| ||| | || | ||| || | |||
Sbjct 9280 GGGGAACGGCCGCGGCTCGCGCTCGAGCTGTGTCTGCAGGGCCTCGATGTGGTCGATGTA 9339
Query 27165 GACGTGAGCGTCTCCCAGGGTGTGGACAAA-CTCTCCCGGTTCTAGCCCGGTGACGTGAG 27223
|||||| |||||||||| | |||| | ||| ||||| | || || ||||| |
Sbjct 9340 GACGTGCGCGTCTCCCATGACGTGGGTGAGGCTC-CCCGGCACCAGATCGCACACGTGGG 9398
Query 27224 CCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGTACCCCGAGCCCCATGT 27283
| | ||||| |||||| || | |||||| || ||||| ||||| | |||||||||||||
Sbjct 9399 CGAGCATGTGCGTGAGCAGCGCGTAGCTCGCAATGTTGAAGGGGATGCCGAGCCCCATGT 9458
Query 27284 CCCCCGACCTCTGGTAGAGCTGACA 27308
| | |||| |||||| ||||| ||
Sbjct 9459 CGCAGGACCGCTGGTACAGCTGGCA 9483
Score = 91.5 bits (100), Expect = 1e-13
Identities = 161/229 (70%), Gaps = 8/229 (3%)
Strand=Plus/Plus
Query 27498 GTACTCTGCTCCGAAATGCCTCCATTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTC 27557
|||||| || || || |||| ||| ||||| ||||| || || |||||||| || | ||
Sbjct 9730 GTACTCGGCGCCAAAGTGCCGCCACTGGAAGCCGTAGACGGGGCCCAGGTCGCCGACGTC 9789
Query 27558 CCTGTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTT 27617
| |||| | | ||| |||| | || || | ||| |||||| |||||||||||||
Sbjct 9790 GCGGTGCGCCAGGCCGACGCTGTCGAGGAACTCGCGGGAGCCGTTGCCGTCCCAGATCTT 9849
Query 27618 TACCCC--CTTCTCGGAGAGCTCTTTG--GAGTTTGTGGACCCTCTGACGAACCACAGCA 27673
|| || | || | ||| || ||| | ||| | || ||||| || |||||| || |
Sbjct 9850 GACGCCGACGTCGCTGAGGGC-CTTGGATGAGGTGTTG--CCCTC-GATGAACCAGAGGA 9905
Query 27674 GCTCCTCCACGACGGCCTTCCAAAAGACCCTCTTGGTCGTGAGGAGGGG 27722
|||| | | |||||| ||||| | ||| || |||||||||||
Sbjct 9906 GCTCGGCGATGACGGCGCGGAGGAAGACGCGCTTCGTGGTGAGGAGGGG 9954
>seq510
Length=17648
Score = 96.9 bits (106), Expect = 3e-15
Identities = 111/145 (77%), Gaps = 6/145 (4%)
Strand=Plus/Minus
Query 48545 AGATGGGTGACAAGTTTGCGTC-CTTCACGGCGCAAAAGGGGACATGTGGAGCCGTCCTG 48603
|||| ||||||||||||||||| | |||||| |||||||| || ||| | | ||
Sbjct 13825 AGATTGGTGACAAGTTTGCGTCTCGTCACGGA-CAAAAGGGCACTATTGGTGTCA--CTT 13769
Query 48604 ACC--CAGGAGGACATGCCCTTCGACAAGGACGGGGTGGTGCCCGACCTCATCATCAACC 48661
||| |||||||||||||| ||| || || || | ||||||| ||||||||||||
Sbjct 13768 ACCGGCAGGAGGACATGCCGTTCACCAGAGAGGGAATTACGCCCGACATCATCATCAACC 13709
Query 48662 CCCACGCCTTTCCCTCCAGGATGAC 48686
|||||||| |||| || | |||||
Sbjct 13708 CCCACGCCATTCCGTCTCGTATGAC 13684
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 369503214518435
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |