Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichoderma_20parareesei_20[genbank_20GCA_5F001050175.1_202015-07-
08] 885 sequences; 32,070,663 total letters
Query= NC_032001.1
Length=327147
Score E
Sequences producing significant alignments: (Bits) Value
seq877 187 5e-42
seq373 179 8e-40
seq764 138 2e-27
seq466 87.8 4e-12
>seq877
Length=50207
Score = 187 bits (206), Expect = 5e-42
Identities = 180/231 (78%), Gaps = 0/231 (0%)
Strand=Plus/Minus
Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931
||||||||||||||| || ||||| || | ||||| || || ||||||||||||||
Sbjct 31701 ACCACCACGCAGGCGCAGGACCAGGTGGAGGGTGCTCTCCTTCTGGATGTTGTAGTCGCT 31642
Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991
|| |||||||||||||| || || || ||||||||||||| || || ||||| ||
Sbjct 31641 CAGGGTGCGGCCATCCTCGAGCTGCTTGCCGGCAAAGATCAGGCGCTGCTGGTCCGGGGG 31582
Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051
|| ||||||||||| || ||||| | || ||| | ||||| ||||| |||| || ||
Sbjct 31581 GATGCCCTCCTTGTCCTGAATCTTGGACTTGACGTTGTCGATGGTGTCGGAAGACTCCAC 31522
Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCATTTT 283102
|| || ||||||||||| ||||| | ||||| ||||| |||||||| ||
Sbjct 31521 CTCAAGGGTGATCGTCTTCCCCGTGAGGGTCTTGACGAAAATCTGCATCTT 31471
>seq373
Length=44988
Score = 179 bits (198), Expect = 8e-40
Identities = 178/228 (78%), Gaps = 2/228 (1%)
Strand=Plus/Minus
Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAG-C 282931
|||||||| || || || ||||| || | ||||| || || |||||||||||||| |
Sbjct 36827 CCACCACGGAGACGGAGAACCAGGTGCAGAGTGCTCTCCTTCTGGATGTTGTAGTCGCTC 36768
Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991
||| || || || || || || || || || ||||||||||| || || |||||| |||
Sbjct 36767 AAG-GTACGACCGTCTTCCAGCTGCTTACCAGCAAAGATCAAGCGCTGCTGGTCAGGCGG 36709
Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051
|||||||||||||| || ||||| | || ||| | ||||| || || || | ||| ||
Sbjct 36708 GATACCCTCCTTGTCCTGAATCTTCGACTTGACGTTGTCGATGGTATCAGATGATTCCAC 36649
Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099
||| ||||| |||||||||||||||| |||||||| || ||||||||
Sbjct 36648 TTCCAGAGTAATCGTCTTACCCGTCAGTGTCTTAACAAAGATCTGCAT 36601
Score = 159 bits (176), Expect = 7e-34
Identities = 172/228 (75%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931
||||||||| ||||| || ||||| || | || || || |||||||||||||| |
Sbjct 36086 ACCACCACGAAGGCGGAGAACCAGGTGGAGGGTAGACTCCTTCTGGATGTTGTAGTCGGA 36027
Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991
|| || ||||| ||||| || || || || |||||||| | ||| || ||||| ||
Sbjct 36026 GAGGGTTCGGCCGTCCTCAAGCTGCTTGCCAGCAAAGATGAGACGCTGCTGGTCCGGAGG 35967
Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051
|||||||||||||| |||||||| | || || | ||||| ||||| || | |||||
Sbjct 35966 GATACCCTCCTTGTCCTGGATCTTGGACTTCACATTGTCGATGGTGTCGGACGACTCGAC 35907
Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099
||||| ||||| ||||| || || | ||||| ||||| ||||||||
Sbjct 35906 CTCGAGGGTGATGGTCTTGCCGGTGAGGGTCTTGACGAAGATCTGCAT 35859
Score = 145 bits (160), Expect = 2e-29
Identities = 163/218 (75%), Gaps = 0/218 (0%)
Strand=Plus/Minus
Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931
|||||| || || || || || || || | || || || |||||||||||||| |
Sbjct 36372 ACCACCGCGAAGACGGAGGACAAGGTGGAGTGTAGACTCCTTCTGGATGTTGTAGTCGGA 36313
Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991
|| || ||||| ||||| || || || || |||||||| | ||| || ||||| ||
Sbjct 36312 GAGGGTTCGGCCGTCCTCAAGCTGCTTGCCAGCAAAGATGAGACGCTGCTGGTCCGGAGG 36253
Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051
|||||||||||||| |||||||| | || ||| | ||||| ||||| || | || ||
Sbjct 36252 GATACCCTCCTTGTCCTGGATCTTGGACTTGACGTTGTCGATGGTGTCAGAGGACTCAAC 36193
Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGA 283089
||||||||||||||||| || |||| ||||| ||||
Sbjct 36192 CTCGAGAGTGATCGTCTTGCCGGTCAGGGTCTTGACGA 36155
Score = 141 bits (156), Expect = 2e-28
Identities = 168/228 (74%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931
||||||||| || || || |||| || | ||||| || || ||||||||||||||
Sbjct 36600 ACCACCACGAAGACGGAGGACCAAGTGCAGGGTGCTCTCCTTCTGGATGTTGTAGTCGCT 36541
Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991
| |||||||| || || || || || || || || |||| || || ||||| ||
Sbjct 36540 CAAAGTGCGGCCGTCTTCCAGCTGCTTACCAGCGAAAATCAGGCGCTGCTGGTCCGGAGG 36481
Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051
||||||||||||||| || ||||| | || ||| | || ||||| || || | |||||
Sbjct 36480 AATACCCTCCTTGTCCTGAATCTTGGACTTGACGTTGTCAATAGTATCAGATGACTCGAC 36421
Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099
|| || ||||| ||||| || || | ||||| ||||| ||||||||
Sbjct 36420 CTCCAGGGTGATGGTCTTTCCTGTGAGGGTCTTGACGAAAATCTGCAT 36373
>seq764
Length=87966
Score = 138 bits (152), Expect = 2e-27
Identities = 138/179 (77%), Gaps = 0/179 (0%)
Strand=Plus/Plus
Query 282912 TTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATC 282971
|| |||||||||||||| | || || ||||||||||| || || || || || ||||||
Sbjct 48338 TTCTGGATGTTGTAGTCGGACAGGGTTCGGCCATCCTCGAGCTGCTTACCAGCGAAGATC 48397
Query 282972 AAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCG 283031
|| || || ||||| ||||| ||||||||||| |||||||| | || || | |||
Sbjct 48398 AATCGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCG 48457
Query 283032 ATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAA 283090
|| ||||| || | ||||| || || ||||| ||||| ||||||| ||||| |||||
Sbjct 48458 ATCGTGTCGGAGGACTCGACCTCAAGGGTGATGGTCTTGCCCGTCAGGGTCTTCACGAA 48516
>seq466
Length=80723
Score = 87.8 bits (96), Expect = 4e-12
Identities = 138/195 (71%), Gaps = 2/195 (1%)
Strand=Plus/Plus
Query 315640 AATTCGCCACTGTGACTAATCACCACCACCCCACCTCCGAAATTCTTAAGCGCCTCTGCC 315699
|| ||| || |||| |||| | | || ||||| |||| ||||| || |||| | |
Sbjct 48715 AACTCGGCAGAGTGAGTAATGATGATGACACCACCCTCGAACTTCTTGAGGGCCTTGGAC 48774
Query 315700 ATGGCACCGAGACTCTCGCGGTCCACAAAGTTGGTCGGCTCATCAAGAACGATGACGTGG 315759
| |||||| ||| || ||||||| ||||||| ||||| ||||| ||||| | ||||
Sbjct 48775 AGGGCACCCAGAGAGTCACGGTCCAGGTAGTTGGTAGGCTCGTCAAGGACGATCAAGTGG 48834
Query 315760 GGTTGTTGCCATAGAGCG-GCGCCGATAACGAGCTTTAGTTTTTGCCCACCAGACAGTCC 315818
||| | |||||| |||| || | | || ||| | || ||||||||||| ||
Sbjct 48835 GGTCGCTGCCAT-GAGCAAGCAGCCAGGACAGTCTTGACACGCTGGCCACCAGACAGACC 48893
Query 315819 ACGGATGCGAGAATG 315833
||| ||||| || ||
Sbjct 48894 ACGCATGCGGGAGTG 48908
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1046727330958790
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |