Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20parareesei_20[genbank_20GCA_5F001050175.1_202015-07- 08] 885 sequences; 32,070,663 total letters Query= NC_032001.1 Length=327147 Score E Sequences producing significant alignments: (Bits) Value seq877 187 5e-42 seq373 179 8e-40 seq764 138 2e-27 seq466 87.8 4e-12 >seq877 Length=50207 Score = 187 bits (206), Expect = 5e-42 Identities = 180/231 (78%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 ||||||||||||||| || ||||| || | ||||| || || |||||||||||||| Sbjct 31701 ACCACCACGCAGGCGCAGGACCAGGTGGAGGGTGCTCTCCTTCTGGATGTTGTAGTCGCT 31642 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 || |||||||||||||| || || || ||||||||||||| || || ||||| || Sbjct 31641 CAGGGTGCGGCCATCCTCGAGCTGCTTGCCGGCAAAGATCAGGCGCTGCTGGTCCGGGGG 31582 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 || ||||||||||| || ||||| | || ||| | ||||| ||||| |||| || || Sbjct 31581 GATGCCCTCCTTGTCCTGAATCTTGGACTTGACGTTGTCGATGGTGTCGGAAGACTCCAC 31522 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCATTTT 283102 || || ||||||||||| ||||| | ||||| ||||| |||||||| || Sbjct 31521 CTCAAGGGTGATCGTCTTCCCCGTGAGGGTCTTGACGAAAATCTGCATCTT 31471 >seq373 Length=44988 Score = 179 bits (198), Expect = 8e-40 Identities = 178/228 (78%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAG-C 282931 |||||||| || || || ||||| || | ||||| || || |||||||||||||| | Sbjct 36827 CCACCACGGAGACGGAGAACCAGGTGCAGAGTGCTCTCCTTCTGGATGTTGTAGTCGCTC 36768 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 ||| || || || || || || || || || ||||||||||| || || |||||| ||| Sbjct 36767 AAG-GTACGACCGTCTTCCAGCTGCTTACCAGCAAAGATCAAGCGCTGCTGGTCAGGCGG 36709 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 |||||||||||||| || ||||| | || ||| | ||||| || || || | ||| || Sbjct 36708 GATACCCTCCTTGTCCTGAATCTTCGACTTGACGTTGTCGATGGTATCAGATGATTCCAC 36649 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 ||| ||||| |||||||||||||||| |||||||| || |||||||| Sbjct 36648 TTCCAGAGTAATCGTCTTACCCGTCAGTGTCTTAACAAAGATCTGCAT 36601 Score = 159 bits (176), Expect = 7e-34 Identities = 172/228 (75%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 ||||||||| ||||| || ||||| || | || || || |||||||||||||| | Sbjct 36086 ACCACCACGAAGGCGGAGAACCAGGTGGAGGGTAGACTCCTTCTGGATGTTGTAGTCGGA 36027 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 || || ||||| ||||| || || || || |||||||| | ||| || ||||| || Sbjct 36026 GAGGGTTCGGCCGTCCTCAAGCTGCTTGCCAGCAAAGATGAGACGCTGCTGGTCCGGAGG 35967 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 |||||||||||||| |||||||| | || || | ||||| ||||| || | ||||| Sbjct 35966 GATACCCTCCTTGTCCTGGATCTTGGACTTCACATTGTCGATGGTGTCGGACGACTCGAC 35907 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 ||||| ||||| ||||| || || | ||||| ||||| |||||||| Sbjct 35906 CTCGAGGGTGATGGTCTTGCCGGTGAGGGTCTTGACGAAGATCTGCAT 35859 Score = 145 bits (160), Expect = 2e-29 Identities = 163/218 (75%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 |||||| || || || || || || || | || || || |||||||||||||| | Sbjct 36372 ACCACCGCGAAGACGGAGGACAAGGTGGAGTGTAGACTCCTTCTGGATGTTGTAGTCGGA 36313 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 || || ||||| ||||| || || || || |||||||| | ||| || ||||| || Sbjct 36312 GAGGGTTCGGCCGTCCTCAAGCTGCTTGCCAGCAAAGATGAGACGCTGCTGGTCCGGAGG 36253 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 |||||||||||||| |||||||| | || ||| | ||||| ||||| || | || || Sbjct 36252 GATACCCTCCTTGTCCTGGATCTTGGACTTGACGTTGTCGATGGTGTCAGAGGACTCAAC 36193 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGA 283089 ||||||||||||||||| || |||| ||||| |||| Sbjct 36192 CTCGAGAGTGATCGTCTTGCCGGTCAGGGTCTTGACGA 36155 Score = 141 bits (156), Expect = 2e-28 Identities = 168/228 (74%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 ||||||||| || || || |||| || | ||||| || || |||||||||||||| Sbjct 36600 ACCACCACGAAGACGGAGGACCAAGTGCAGGGTGCTCTCCTTCTGGATGTTGTAGTCGCT 36541 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 | |||||||| || || || || || || || || |||| || || ||||| || Sbjct 36540 CAAAGTGCGGCCGTCTTCCAGCTGCTTACCAGCGAAAATCAGGCGCTGCTGGTCCGGAGG 36481 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 ||||||||||||||| || ||||| | || ||| | || ||||| || || | ||||| Sbjct 36480 AATACCCTCCTTGTCCTGAATCTTGGACTTGACGTTGTCAATAGTATCAGATGACTCGAC 36421 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 || || ||||| ||||| || || | ||||| ||||| |||||||| Sbjct 36420 CTCCAGGGTGATGGTCTTTCCTGTGAGGGTCTTGACGAAAATCTGCAT 36373 >seq764 Length=87966 Score = 138 bits (152), Expect = 2e-27 Identities = 138/179 (77%), Gaps = 0/179 (0%) Strand=Plus/Plus Query 282912 TTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATC 282971 || |||||||||||||| | || || ||||||||||| || || || || || |||||| Sbjct 48338 TTCTGGATGTTGTAGTCGGACAGGGTTCGGCCATCCTCGAGCTGCTTACCAGCGAAGATC 48397 Query 282972 AAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCG 283031 || || || ||||| ||||| ||||||||||| |||||||| | || || | ||| Sbjct 48398 AATCGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCG 48457 Query 283032 ATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAA 283090 || ||||| || | ||||| || || ||||| ||||| ||||||| ||||| ||||| Sbjct 48458 ATCGTGTCGGAGGACTCGACCTCAAGGGTGATGGTCTTGCCCGTCAGGGTCTTCACGAA 48516 >seq466 Length=80723 Score = 87.8 bits (96), Expect = 4e-12 Identities = 138/195 (71%), Gaps = 2/195 (1%) Strand=Plus/Plus Query 315640 AATTCGCCACTGTGACTAATCACCACCACCCCACCTCCGAAATTCTTAAGCGCCTCTGCC 315699 || ||| || |||| |||| | | || ||||| |||| ||||| || |||| | | Sbjct 48715 AACTCGGCAGAGTGAGTAATGATGATGACACCACCCTCGAACTTCTTGAGGGCCTTGGAC 48774 Query 315700 ATGGCACCGAGACTCTCGCGGTCCACAAAGTTGGTCGGCTCATCAAGAACGATGACGTGG 315759 | |||||| ||| || ||||||| ||||||| ||||| ||||| ||||| | |||| Sbjct 48775 AGGGCACCCAGAGAGTCACGGTCCAGGTAGTTGGTAGGCTCGTCAAGGACGATCAAGTGG 48834 Query 315760 GGTTGTTGCCATAGAGCG-GCGCCGATAACGAGCTTTAGTTTTTGCCCACCAGACAGTCC 315818 ||| | |||||| |||| || | | || ||| | || ||||||||||| || Sbjct 48835 GGTCGCTGCCAT-GAGCAAGCAGCCAGGACAGTCTTGACACGCTGGCCACCAGACAGACC 48893 Query 315819 ACGGATGCGAGAATG 315833 ||| ||||| || || Sbjct 48894 ACGCATGCGGGAGTG 48908 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1046727330958790