Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichoderma_20parareesei_20[genbank_20GCA_5F001050175.1_202015-07-
08] 885 sequences; 32,070,663 total letters
Query= NC_033775.1
Length=376207
Score E
Sequences producing significant alignments: (Bits) Value
seq877 154 4e-32
seq373 147 5e-30
seq764 129 1e-24
>seq877
Length=50207
Score = 154 bits (170), Expect = 4e-32
Identities = 147/188 (78%), Gaps = 0/188 (0%)
Strand=Plus/Plus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
|| |||||||| || || ||||| || || ||||||||||| |||||||| || |||
Sbjct 31477 CAGATTTTCGTCAAGACCCTCACGGGGAAGACGATCACCCTTGAGGTGGAGTCTTCCGAC 31536
Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043
|||||||| |||||||| |||||||||||||| || || ||||| |||||||||||
Sbjct 31537 ACCATCGACAACGTCAAGTCCAAGATTCAGGACAAGGAGGGCATCCCCCCGGACCAGCAG 31596
Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103
|| || ||||| ||||| || |||||||| ||||| | || || ||| || ||| ||
Sbjct 31597 CGCCTGATCTTTGCCGGCAAGCAGCTCGAGGATGGCCGCACCCTGAGCGACTACAACATC 31656
Query 178104 CAAAAAGA 178111
|| || ||
Sbjct 31657 CAGAAGGA 31664
>seq373
Length=44988
Score = 147 bits (162), Expect = 5e-30
Identities = 152/199 (76%), Gaps = 0/199 (0%)
Strand=Plus/Plus
Query 177931 TCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCATCG 177990
|||| || || || || || || |||||||| |||||||| || ||| ||||||||||
Sbjct 36155 TCGTCAAGACCCTGACCGGCAAGACGATCACTCTCGAGGTTGAGTCCTCTGACACCATCG 36214
Query 177991 AGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTA 178050
| |||||||| ||||| |||||||| || || ||||||||||||||||| || || |
Sbjct 36215 ACAACGTCAAGTCCAAGATCCAGGACAAGGAGGGTATCCCTCCGGACCAGCAGCGTCTCA 36274
Query 178051 TCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAG 178110
|||| || || || ||||| || || || | || || |||| || ||| |||| || |
Sbjct 36275 TCTTTGCTGGCAAGCAGCTTGAGGACGGCCGAACCCTCTCCGACTACAACATCCAGAAGG 36334
Query 178111 AATCAACACTGCATCTTGT 178129
| || ||||| || |||||
Sbjct 36335 AGTCTACACTCCACCTTGT 36353
Score = 134 bits (148), Expect = 3e-26
Identities = 154/207 (74%), Gaps = 0/207 (0%)
Strand=Plus/Plus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
|| || ||||| || || ||||| || || || |||||||||||||| || || |||
Sbjct 35862 CAGATCTTCGTCAAGACCCTCACCGGCAAGACCATCACCCTCGAGGTCGAGTCGTCCGAC 35921
Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043
|||||||| || || || ||||| |||||||| || || |||||||||||||||||
Sbjct 35922 ACCATCGACAATGTGAAGTCCAAGATCCAGGACAAGGAGGGTATCCCTCCGGACCAGCAG 35981
Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103
|| || ||||| || || || ||||| || || || | || || |||| || ||| ||
Sbjct 35982 CGTCTCATCTTTGCTGGCAAGCAGCTTGAGGACGGCCGAACCCTCTCCGACTACAACATC 36041
Query 178104 CAAAAAGAATCAACACTGCATCTTGTT 178130
|| || || || || || || || |||
Sbjct 36042 CAGAAGGAGTCTACCCTCCACCTGGTT 36068
Score = 132 bits (146), Expect = 1e-25
Identities = 142/188 (76%), Gaps = 0/188 (0%)
Strand=Plus/Plus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
|| |||||||| || || ||||||||||| || |||||||| ||||| || || ||
Sbjct 36376 CAGATTTTCGTCAAGACCCTCACAGGAAAGACCATCACCCTGGAGGTCGAGTCATCTGAT 36435
Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043
|| || || |||||||| |||||||||||||| || || || ||||||||||||||
Sbjct 36436 ACTATTGACAACGTCAAGTCCAAGATTCAGGACAAGGAGGGTATTCCTCCGGACCAGCAG 36495
Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103
|| || || ||||| || || ||||| ||||| || | ||| | ||| || ||| ||
Sbjct 36496 CGCCTGATTTTCGCTGGTAAGCAGCTGGAAGACGGCCGCACTTTGAGCGACTACAACATC 36555
Query 178104 CAAAAAGA 178111
|| || ||
Sbjct 36556 CAGAAGGA 36563
Score = 111 bits (122), Expect = 4e-19
Identities = 151/208 (73%), Gaps = 2/208 (1%)
Strand=Plus/Plus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
|| || || || || || || || || || ||||| || || || |||||| || ||
Sbjct 36604 CAGATCTTTGTTAAGACACTGACGGGTAAGACGATTACTCTGGAAGTGGAATCATCTGAT 36663
Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043
|||||||| |||||||| |||||||||||||| || || ||||| || ||||||||
Sbjct 36664 ACCATCGACAACGTCAAGTCGAAGATTCAGGACAAGGAGGGTATCCCGCCTGACCAGCAG 36723
Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTG-CCGATTATAACGT 178102
|| | ||||| || || || ||||| ||||| || | || |||| ||| || ||| |
Sbjct 36724 CGCTTGATCTTTGCTGGTAAGCAGCTGGAAGACGGTCGTAC-CTTGAGCGACTACAACAT 36782
Query 178103 CCAAAAAGAATCAACACTGCATCTTGTT 178130
||| || || || ||||| || |||
Sbjct 36783 CCAGAAGGAGAGCACTCTGCACCTGGTT 36810
>seq764
Length=87966
Score = 129 bits (142), Expect = 1e-24
Identities = 136/179 (76%), Gaps = 0/179 (0%)
Strand=Plus/Minus
Query 177930 TTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCATC 177989
|||||||| || || || || || || |||||||| ||||| || ||| ||||| |||
Sbjct 48516 TTCGTGAAGACCCTGACGGGCAAGACCATCACCCTTGAGGTCGAGTCCTCCGACACGATC 48457
Query 177990 GAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTT 178049
|| || ||||| ||||| |||||||| || || || || ||||||||||| ||| |
Sbjct 48456 GACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGCATTCCCCCGGACCAGCAGCGATTG 48397
Query 178050 ATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAA 178108
|||||||| || || |||||||| ||||| | || || |||| || ||| |||| ||
Sbjct 48396 ATCTTCGCTGGTAAGCAGCTCGAGGATGGCCGAACCCTGTCCGACTACAACATCCAGAA 48338
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1203717550816690
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |