Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20pleuroti_20[genbank_20GCA_5F001721665.1_202016-09-08] 2,355 sequences; 38,137,656 total letters Query= NC_000852.5 Length=330611 Score E Sequences producing significant alignments: (Bits) Value seq535 131 4e-25 >seq535 Length=62126 Score = 131 bits (144), Expect = 4e-25 Identities = 275/405 (68%), Gaps = 4/405 (1%) Strand=Plus/Minus Query 230237 CCATCTTTTGGCTGCGGAACAAAGGTGTGATGCCTGGCCTCGGTCTGTCTAACGAGTTCA 230296 ||||||| ||| | ||| |||| | |||||||| || | || |||||| ||| Sbjct 15187 CCATCTTCTGGGTCAAGAAGCGAGGTCTCATGCCTGGTCTGACCTTTTCCAACGAGCTCA 15128 Query 230297 TCAGTCGCGACGAGGGTCTCCATCAACAGTTCGGCGAGCTTATGTATTCAAAGCTCCAGA 230356 || ||| || |||||||| || | || | | || || | || | ||| ||| Sbjct 15127 TCTCTCGTGATGAGGGTCTGCACACTGACTTTGCCTGCCTGCTGCACTCTCACCTCAAGA 15068 Query 230357 ACAA-GCTACCATTCGAGACGGTCAAACAAATCATTACAGAAGCAGTTGAAAACGAAAAG 230415 || || | || |||| | || | ||||| || || || || || || || Sbjct 15067 ACCGTGCCAGCAAG-GAGATGATCCGTGACATCATCACCGACGCTGTCCGAATTGAGCAG 15009 Query 230416 GAGTTCATTTGTGACGCTATTCCATGTCGCCTTA-TTGGCATGAACGCTGAACTTATGGG 230474 |||||| | || ||| | || || |||||| ||||||||||| | || ||| Sbjct 15008 GAGTTCTTGACCGAGGCTCTCCCCTG-CGCCTTGCTTGGCATGAACTCCAGCCTGATGAA 14950 Query 230475 ACAGTACATCGAATTCGTAGCCGACCGCATTTTTGTTGCACTTGGTTACGAGAAAGTGTA 230534 |||||||| || || || ||||||||| | | || || || || |||| || || || Sbjct 14949 GCAGTACATTGAGTTTGTTGCCGACCGCCTGCTGGTCGCTCTCGGCAACGAAAAGGTCTA 14890 Query 230535 CAACTCTAAGAACCCCTTTGCATTTATGGAGCTCATTTCGCTTCAAGGGAAGACCAACTT 230594 ||| ||| |||||||||| || |||||| |||||| || || ||||||||||| Sbjct 14889 CAAGTCTTCCAACCCCTTTGACTTCATGGAGAACATTTCTCTCGGTGGCAAGACCAACTT 14830 Query 230595 CTTCGAAAAGCGTGTCAGTGACTATCAGAGGCCTGGTGTGATGAA 230639 |||||| ||||| ||| ||||| |||| | ||||||| ||||| Sbjct 14829 CTTCGAGAAGCGCGTCGCCGACTACCAGAAGGCTGGTGTCATGAA 14785 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1057792081813650