Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20pleuroti_20[genbank_20GCA_5F001721665.1_202016-09-08] 2,355 sequences; 38,137,656 total letters Query= NC_001132.2 Length=161773 Score E Sequences producing significant alignments: (Bits) Value seq535 147 2e-30 >seq535 Length=62126 Score = 147 bits (162), Expect = 2e-30 Identities = 575/888 (65%), Gaps = 31/888 (3%) Strand=Plus/Plus Query 16652 TGTTTATGAACAACACCCATTCTTTGGTAATCGCTAACGCGTTTTTCGAAAAAGTTAGTT 16711 |||| |||| || || || |||| |||| ||| ||||| || ||||| ||||| || Sbjct 14783 TGTTCATGA-CACCAGCC-TTCT--GGTAGTCGGCGACGCGCTTCTCGAAGAAGTTGGTC 14838 Query 16712 TTGCCCTCTAGAGATATATTCTCCATGAAATCAAAAGGATTAGTAGC--TGAAAATATTT 16769 ||||| | ||||| || ||||||||||| ||||| || || | || || | | ||| Sbjct 14839 TTGCCACCGAGAGAAATGTTCTCCATGAAGTCAAAGGGGTTGGAAGACTTGTAGACCTTT 14898 Query 16770 TAGAGTACCCCAGTTCGGCGATTAATCTATCCGCTACAAATTCTATATATTGGCACATTA 16829 | | | || || || | | | | || || ||||| || || || || ||| | Sbjct 14899 TCG--TTGCCGAGAGCGACCAGCAGGCGGTCGGCAACAAACTCAATGTACTGCTTCATCA 14956 Query 16830 ATTCGCAGTTCATTCCTAT-AAGACGTACCGGAAGAGCTTCCGTCAAAAATCGTTGCTCT 16888 | ||||||| || | ||| || | ||| |||| || ||||| || ||||| Sbjct 14957 GGCTGGAGTTCATGCCAAGCAAGGCGCAGGGGA-GAGCCTCGGTCAAGAACTCCTGCTCA 15015 Query 16889 ATAACAACCGCTTCCTTAATAAT---ACT-AGCAACTCGTTCCTCGGACGGTGTATGTTT 16944 || || || || | || || || | || ||| || || | ||||| || Sbjct 15016 ATTCGGACAGCGTCGGTGATGATGTCACGGATCATCTCCTTGCTGGCACGGTTCTTG--- 15072 Query 16945 AAGATGTTTAAACATCAGACATGCGAAATCGCAATGTAATCCCTCGTCTCTGCTGATAAG 17004 || || || ||| || || || || || | ||||| || | ||| || Sbjct 15073 -AGGTGAGAGTGCAGCAGGCAGGCAAAGTCAGTGTGCAGACCCTCATCACGAGAGATGAG 15131 Query 17005 TTCGTTAGAAAATGTCAACCCGGGCATCTTTCCTCGTTTCTTTAACCAAAATATCGCGGC 17064 ||||| ||||| |||| || ||||| ||||| ||||| | ||| || || | ||| Sbjct 15132 CTCGTTGGAAAAGGTCAGACCAGGCATGAGACCTCGCTTCTTGACCCAGAAGATGGAGGC 15191 Query 17065 GAACGACCCAGAAAAGAATATACCCTCGACGGATGCAAACGCGATTAATCGTTCGGCGTA 17124 || | || ||||| || |||||||||| ||||| || | | || | ||| | Sbjct 15192 AAAGGCACCGCTGAAGAAGATGCCCTCGACGGCGGCAAAGGCAACCAGGCGCTGGGCAAA 15251 Query 17125 CGTCGCGTCTTTGTTACGAATCCATTTCTGCACCCACTCGGC-TTTTTGCTTTATGCAAT 17183 | | || |||| ||||||| || |||| ||||| ||||||| |||||| Sbjct 15252 GGAAGAGTTCTTGTCCTGAATCCACTTGATGGCCCAGTCGGCCTTTTTGCGA-ATGCAAG 15310 Query 17184 CCATCGTTTCTATGGCCTTAAATAATTT-CTCTTTTTCCTGTAGGTCGATTATATACGTA 17242 || || || ||||| || || | | || | |||| || | || || || Sbjct 15311 GAATGGTCTCAATGGCGTTGAAGAGGTAGCTGCGCTGGCTGTTC-TCCTTGATGTAGGTG 15369 Query 17243 TCGATGAGTAGGCTGTACATTTCGGAGTGTATGTTCTCCATGGCTATCTGAAATCCGTAA 17302 |||||||| ||| ||| | |||||||| ||||||||||| ||||| || ||||| Sbjct 15370 TCGATGAGCAGGGAGTAGGTCTCGGAGTGGATGTTCTCCATCATGATCTGGAAGCCGTAG 15429 Query 17303 AAGCATCGGGCTTCCGCTATTTGAACTTCCACGTAGAATCGTTCCGCTAGATTTTCGTTC 17362 |||||||| || || | || || || || || ||| || || | || || ||||| Sbjct 15430 AAGCATCGAGCCTCGGGGATCTGGACCTCGCCGCTGAAGCGCTCGACCAGGTTCTCGTTG 15489 Query 17363 ACGATGCCGTCGCTCGCGGCGAAAAACGCCAATATATGCTTAATGAAATATTTTTCGTCC 17422 || ||||| || ||||| || || |||| || || ||||| || || ||||| Sbjct 15490 ACAATGCCATCAGAGGCGGCAAAGAAGGCCAGGATGTGAGAGATGAAGTACTTCTCGTCA 15549 Query 17423 GGTGTAAGAACGCG------CCAGTCCTTTAAATCTTTGGATATATCCACTTCTTCGGGG 17476 | || ||| |||||| | | ||| ||||| | ||| | ||||||| | Sbjct 15550 TCGTTCAG---GCGGTTGTTCCAGTCGTGCAGATCCTTGGACAGATCAATCTCTTCGGCG 15606 Query 17477 GTCCAAAAACTAGCCACTGCCTTTTTATACATATTCCAAATATCATTG 17524 ||||| || ||| | |||||||| ||||| | |||||| | |||| Sbjct 15607 GTCCAGAAGGAGGCCTCGGCCTTTTTGTACATTTGCCAAATCTAATTG 15654 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 517530364751400