Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichoderma_20pleuroti_20[genbank_20GCA_5F001721665.1_202016-09-08]
2,355 sequences; 38,137,656 total letters
Query= NC_001132.2
Length=161773
Score E
Sequences producing significant alignments: (Bits) Value
seq535 147 2e-30
>seq535
Length=62126
Score = 147 bits (162), Expect = 2e-30
Identities = 575/888 (65%), Gaps = 31/888 (3%)
Strand=Plus/Plus
Query 16652 TGTTTATGAACAACACCCATTCTTTGGTAATCGCTAACGCGTTTTTCGAAAAAGTTAGTT 16711
|||| |||| || || || |||| |||| ||| ||||| || ||||| ||||| ||
Sbjct 14783 TGTTCATGA-CACCAGCC-TTCT--GGTAGTCGGCGACGCGCTTCTCGAAGAAGTTGGTC 14838
Query 16712 TTGCCCTCTAGAGATATATTCTCCATGAAATCAAAAGGATTAGTAGC--TGAAAATATTT 16769
||||| | ||||| || ||||||||||| ||||| || || | || || | | |||
Sbjct 14839 TTGCCACCGAGAGAAATGTTCTCCATGAAGTCAAAGGGGTTGGAAGACTTGTAGACCTTT 14898
Query 16770 TAGAGTACCCCAGTTCGGCGATTAATCTATCCGCTACAAATTCTATATATTGGCACATTA 16829
| | | || || || | | | | || || ||||| || || || || ||| |
Sbjct 14899 TCG--TTGCCGAGAGCGACCAGCAGGCGGTCGGCAACAAACTCAATGTACTGCTTCATCA 14956
Query 16830 ATTCGCAGTTCATTCCTAT-AAGACGTACCGGAAGAGCTTCCGTCAAAAATCGTTGCTCT 16888
| ||||||| || | ||| || | ||| |||| || ||||| || |||||
Sbjct 14957 GGCTGGAGTTCATGCCAAGCAAGGCGCAGGGGA-GAGCCTCGGTCAAGAACTCCTGCTCA 15015
Query 16889 ATAACAACCGCTTCCTTAATAAT---ACT-AGCAACTCGTTCCTCGGACGGTGTATGTTT 16944
|| || || || | || || || | || ||| || || | ||||| ||
Sbjct 15016 ATTCGGACAGCGTCGGTGATGATGTCACGGATCATCTCCTTGCTGGCACGGTTCTTG--- 15072
Query 16945 AAGATGTTTAAACATCAGACATGCGAAATCGCAATGTAATCCCTCGTCTCTGCTGATAAG 17004
|| || || ||| || || || || || | ||||| || | ||| ||
Sbjct 15073 -AGGTGAGAGTGCAGCAGGCAGGCAAAGTCAGTGTGCAGACCCTCATCACGAGAGATGAG 15131
Query 17005 TTCGTTAGAAAATGTCAACCCGGGCATCTTTCCTCGTTTCTTTAACCAAAATATCGCGGC 17064
||||| ||||| |||| || ||||| ||||| ||||| | ||| || || | |||
Sbjct 15132 CTCGTTGGAAAAGGTCAGACCAGGCATGAGACCTCGCTTCTTGACCCAGAAGATGGAGGC 15191
Query 17065 GAACGACCCAGAAAAGAATATACCCTCGACGGATGCAAACGCGATTAATCGTTCGGCGTA 17124
|| | || ||||| || |||||||||| ||||| || | | || | ||| |
Sbjct 15192 AAAGGCACCGCTGAAGAAGATGCCCTCGACGGCGGCAAAGGCAACCAGGCGCTGGGCAAA 15251
Query 17125 CGTCGCGTCTTTGTTACGAATCCATTTCTGCACCCACTCGGC-TTTTTGCTTTATGCAAT 17183
| | || |||| ||||||| || |||| ||||| ||||||| ||||||
Sbjct 15252 GGAAGAGTTCTTGTCCTGAATCCACTTGATGGCCCAGTCGGCCTTTTTGCGA-ATGCAAG 15310
Query 17184 CCATCGTTTCTATGGCCTTAAATAATTT-CTCTTTTTCCTGTAGGTCGATTATATACGTA 17242
|| || || ||||| || || | | || | |||| || | || || ||
Sbjct 15311 GAATGGTCTCAATGGCGTTGAAGAGGTAGCTGCGCTGGCTGTTC-TCCTTGATGTAGGTG 15369
Query 17243 TCGATGAGTAGGCTGTACATTTCGGAGTGTATGTTCTCCATGGCTATCTGAAATCCGTAA 17302
|||||||| ||| ||| | |||||||| ||||||||||| ||||| || |||||
Sbjct 15370 TCGATGAGCAGGGAGTAGGTCTCGGAGTGGATGTTCTCCATCATGATCTGGAAGCCGTAG 15429
Query 17303 AAGCATCGGGCTTCCGCTATTTGAACTTCCACGTAGAATCGTTCCGCTAGATTTTCGTTC 17362
|||||||| || || | || || || || || ||| || || | || || |||||
Sbjct 15430 AAGCATCGAGCCTCGGGGATCTGGACCTCGCCGCTGAAGCGCTCGACCAGGTTCTCGTTG 15489
Query 17363 ACGATGCCGTCGCTCGCGGCGAAAAACGCCAATATATGCTTAATGAAATATTTTTCGTCC 17422
|| ||||| || ||||| || || |||| || || ||||| || || |||||
Sbjct 15490 ACAATGCCATCAGAGGCGGCAAAGAAGGCCAGGATGTGAGAGATGAAGTACTTCTCGTCA 15549
Query 17423 GGTGTAAGAACGCG------CCAGTCCTTTAAATCTTTGGATATATCCACTTCTTCGGGG 17476
| || ||| |||||| | | ||| ||||| | ||| | ||||||| |
Sbjct 15550 TCGTTCAG---GCGGTTGTTCCAGTCGTGCAGATCCTTGGACAGATCAATCTCTTCGGCG 15606
Query 17477 GTCCAAAAACTAGCCACTGCCTTTTTATACATATTCCAAATATCATTG 17524
||||| || ||| | |||||||| ||||| | |||||| | ||||
Sbjct 15607 GTCCAGAAGGAGGCCTCGGCCTTTTTGTACATTTGCCAAATCTAATTG 15654
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 517530364751400
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |