Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichoderma_20pleuroti_20[genbank_20GCA_5F001721665.1_202016-09-08]
2,355 sequences; 38,137,656 total letters
Query= NC_001266.1
Length=159857
Score E
Sequences producing significant alignments: (Bits) Value
seq535 113 5e-20
>seq535
Length=62126
Score = 113 bits (124), Expect = 5e-20
Identities = 345/530 (65%), Gaps = 5/530 (1%)
Strand=Plus/Plus
Query 16237 GATAAGTTCGTTGGAAAAAGTTAACCCTGGCATTTTTCCTCGTTTCTTTAACCAGAATAT 16296
||| || ||||||||||| || | || ||||| ||||| ||||| | |||||| ||
Sbjct 15126 GATGAGCTCGTTGGAAAAGGTCAGACCAGGCATGAGACCTCGCTTCTTGACCCAGAAGAT 15185
Query 16297 CGCAGCAAATGACCCCGAAAAGAATATACCCTCAACAGATGCAAAAGCGATTAATCGTTC 16356
| ||||| | || ||||| || ||||| || | ||||| || | | || |
Sbjct 15186 GGAGGCAAAGGCACCGCTGAAGAAGATGCCCTCGACGGCGGCAAAGGCAACCAGGCGCTG 15245
Query 16357 CGCGTACGTAGCATCTTTATTACGAATCCATTTCTGTACCCATTCGGCTTTTTGTTTTAT 16416
|| | | || | || | ||||||| || |||| ||||| |||| ||
Sbjct 15246 GGCAAAGGAAGAGTTCTTGTCCTGAATCCACTTGATGGCCCAGTCGGCCTTTTTGCGAAT 15305
Query 16417 ACAATCCATCGTTTCTATGGCCTTAAACAATTT-CTCTTTTTCCTGAATATCGATTATAT 16475
||| || || || ||||| || || | | || | ||| | || | || |
Sbjct 15306 GCAAGGAATGGTCTCAATGGCGTTGAAGAGGTAGCTGCGCTGGCTGT-TCTCCTTGATGT 15364
Query 16476 ACGTATCAATCAGTAAACTGTACATTTCTGAGTGTATGTTCTCTATGGCTATCTGAAATC 16535
| || || || || | ||| | || ||||| |||||||| || ||||| || |
Sbjct 15365 AGGTGTCGATGAGCAGGGAGTAGGTCTCGGAGTGGATGTTCTCCATCATGATCTGGAAGC 15424
Query 16536 CATAGAAGCATCGAGCCTCCGCTATTTGTACTTCCACGTAAAATCGTTCCGCCAGGTTCT 16595
| ||||||||||||||||| | || || || || || || || || |||||||||
Sbjct 15425 CGTAGAAGCATCGAGCCTCGGGGATCTGGACCTCGCCGCTGAAGCGCTCGACCAGGTTCT 15484
Query 16596 CATTCACGATACCGTCACTTGCAGCAAAAAACGCCAATATGTGCTTAATGAAATATTTTT 16655
| || || || || ||| || ||||| || |||| ||||| ||||| || || |
Sbjct 15485 CGTTGACAATGCCATCAGAGGCGGCAAAGAAGGCCAGGATGTGAGAGATGAAGTACTTCT 15544
Query 16656 CGTCAGATGTAA---GAATATGCCAATCTTTTAAATCTTTGGATATATCCACTTCTTCTG 16712
||||| | | | | | ||| || | | ||| ||||| | ||| | ||||| |
Sbjct 15545 CGTCATCGTTCAGGCGGTTGTTCCAGTCGTGCAGATCCTTGGACAGATCAATCTCTTCGG 15604
Query 16713 GCGTCCAAAAGCTAGCCACTGCCTTTTTATACATTTTCCAAATATCATTG 16762
||||| ||| ||| | |||||||| ||||||| |||||| | ||||
Sbjct 15605 CGGTCCAGAAGGAGGCCTCGGCCTTTTTGTACATTTGCCAAATCTAATTG 15654
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 511399345238600
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |