Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20pleuroti_20[genbank_20GCA_5F001721665.1_202016-09-08] 2,355 sequences; 38,137,656 total letters Query= NC_001266.1 Length=159857 Score E Sequences producing significant alignments: (Bits) Value seq535 113 5e-20 >seq535 Length=62126 Score = 113 bits (124), Expect = 5e-20 Identities = 345/530 (65%), Gaps = 5/530 (1%) Strand=Plus/Plus Query 16237 GATAAGTTCGTTGGAAAAAGTTAACCCTGGCATTTTTCCTCGTTTCTTTAACCAGAATAT 16296 ||| || ||||||||||| || | || ||||| ||||| ||||| | |||||| || Sbjct 15126 GATGAGCTCGTTGGAAAAGGTCAGACCAGGCATGAGACCTCGCTTCTTGACCCAGAAGAT 15185 Query 16297 CGCAGCAAATGACCCCGAAAAGAATATACCCTCAACAGATGCAAAAGCGATTAATCGTTC 16356 | ||||| | || ||||| || ||||| || | ||||| || | | || | Sbjct 15186 GGAGGCAAAGGCACCGCTGAAGAAGATGCCCTCGACGGCGGCAAAGGCAACCAGGCGCTG 15245 Query 16357 CGCGTACGTAGCATCTTTATTACGAATCCATTTCTGTACCCATTCGGCTTTTTGTTTTAT 16416 || | | || | || | ||||||| || |||| ||||| |||| || Sbjct 15246 GGCAAAGGAAGAGTTCTTGTCCTGAATCCACTTGATGGCCCAGTCGGCCTTTTTGCGAAT 15305 Query 16417 ACAATCCATCGTTTCTATGGCCTTAAACAATTT-CTCTTTTTCCTGAATATCGATTATAT 16475 ||| || || || ||||| || || | | || | ||| | || | || | Sbjct 15306 GCAAGGAATGGTCTCAATGGCGTTGAAGAGGTAGCTGCGCTGGCTGT-TCTCCTTGATGT 15364 Query 16476 ACGTATCAATCAGTAAACTGTACATTTCTGAGTGTATGTTCTCTATGGCTATCTGAAATC 16535 | || || || || | ||| | || ||||| |||||||| || ||||| || | Sbjct 15365 AGGTGTCGATGAGCAGGGAGTAGGTCTCGGAGTGGATGTTCTCCATCATGATCTGGAAGC 15424 Query 16536 CATAGAAGCATCGAGCCTCCGCTATTTGTACTTCCACGTAAAATCGTTCCGCCAGGTTCT 16595 | ||||||||||||||||| | || || || || || || || || ||||||||| Sbjct 15425 CGTAGAAGCATCGAGCCTCGGGGATCTGGACCTCGCCGCTGAAGCGCTCGACCAGGTTCT 15484 Query 16596 CATTCACGATACCGTCACTTGCAGCAAAAAACGCCAATATGTGCTTAATGAAATATTTTT 16655 | || || || || ||| || ||||| || |||| ||||| ||||| || || | Sbjct 15485 CGTTGACAATGCCATCAGAGGCGGCAAAGAAGGCCAGGATGTGAGAGATGAAGTACTTCT 15544 Query 16656 CGTCAGATGTAA---GAATATGCCAATCTTTTAAATCTTTGGATATATCCACTTCTTCTG 16712 ||||| | | | | | ||| || | | ||| ||||| | ||| | ||||| | Sbjct 15545 CGTCATCGTTCAGGCGGTTGTTCCAGTCGTGCAGATCCTTGGACAGATCAATCTCTTCGG 15604 Query 16713 GCGTCCAAAAGCTAGCCACTGCCTTTTTATACATTTTCCAAATATCATTG 16762 ||||| ||| ||| | |||||||| ||||||| |||||| | |||| Sbjct 15605 CGGTCCAGAAGGAGGCCTCGGCCTTTTTGTACATTTGCCAAATCTAATTG 15654 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 511399345238600