Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichoderma_20pleuroti_20[genbank_20GCA_5F001721665.1_202016-09-08]
2,355 sequences; 38,137,656 total letters
Query= NC_001611.1
Length=185578
Score E
Sequences producing significant alignments: (Bits) Value
seq1903 131 2e-25
>seq1903
Length=20131
Score = 131 bits (144), Expect = 2e-25
Identities = 455/700 (65%), Gaps = 15/700 (2%)
Strand=Plus/Plus
Query 53981 CCAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATA 54040
||||||||||| | || ||||| | || ||| || || | || || || |||||
Sbjct 4984 CCAGGACATTCGTTGGGGCACATGAGCGTCCAGTCCAAGTTCTTCTCAACACGCTTCATG 5043
Query 54041 AAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGTTCCTCGTTTCCT 54100
||||| || |||||||| ||||| | || | || | | | || || || ||
Sbjct 5044 AAGAGGTCGGGAATCCAGAGAGCAAGGAACAAGTCGCGAGCGCGGACCTCTTCCTTGCCG 5103
Query 54101 GTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATG 54160
||||| ||||| |||||| | | | || | ||||| || || | ||| |||
Sbjct 5104 TGGTTCTTGCGGAGATCAAGGAACTCAAAGACGTCGGCGTGCCAGGGCTCGAGGTAGATG 5163
Query 54161 GTCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAA 54220
| | | | ||||| || ||||| || |||||||| | ||||| || ||||| || |
Sbjct 5164 GCAAAAGCACCAGGACGCTTGTTACCACCCTGATCGACATATCTGGCAGTGTTGTTGAAC 5223
Query 54221 ACTCTCAACATTGGAATAATACCATTGGATGCACCATTGGTCCCGGAGATATAGCTTCCA 54280
|||| | ||| ||||||||||| ||||| | ||| ||||| || | || || ||
Sbjct 5224 ACTCGAAGCATGGGAATAATACCGTTGGAGGTACCGTTGGTGCCAGCAATGTAAGAGCCG 5283
Query 54281 CTGGCACGAAT--ATTACTAATTGATAGACCTATCCCCCCTGCCATTTTAGAGATTAATG 54338
||||||| || | || | || || || || || |||||||| || || | |
Sbjct 5284 GTGGCACGGATGCGGTGGACGTTCA-AG-CCGATACCACCAGCCATTTTGGAAATCATGG 5341
Query 54339 CGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAA 54398
| ||| || | || |||||||| ||||| |||||||| ||| |||||| | | |
Sbjct 5342 CACATGTCTTCAGGGTGTCATAGATACCCTCGATACTATCGTCCTTCATGTCGACCAAGA 5401
Query 54399 AACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATA-AGGTAGGAGAAGCGTGC 54457
| || |||| ||| | || || || || || | ||| || || || ||
Sbjct 5402 AGCATGAGGACAGCTGGGCCTGCGGGGTACCGGCGTTGAACAGGGGTGGGGGAGGCATGG 5461
Query 54458 GTAAACCATTTTTCAGAAAGTAGATTGTACGTCTC---GATA-GCTGAGTCT-ATATCCC 54512
|| || | || ||| | || ||||| ||||| || | ||| | | | | ||||
Sbjct 5462 GTGAAGAACTTGCTAGACATGAGGTTGTATGTCTCCAGGACACGCTCAATGTCGTCTCCC 5521
Query 54513 ATTGATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGT 54572
|||| || || | || ||||| | ||||||||| || | ||||| ||||||
Sbjct 5522 -CAGATG----CCAACAGACACCCGCATAATCATGTGCTGTGGCCGCTCAACAATCTTGC 5576
Query 54573 TGTTTATTTTCAGCAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAA 54632
| | ||||| | ||| || |||| ||| || || ||||| || | ||| |
Sbjct 5577 CATCAAGCTTCAGAAGGTATGACCGCTCCAGAGTCTTGAAGCCAAAGTATTGGTAGTTGA 5636
Query 54633 AGTCTCGTTCGTAAATAATAACTGAGTTGAGTTTATCCTT 54672
||||||| ||||| | ||| | |||| ||| | |||||
Sbjct 5637 AGTCTCGATCGTAGACAATGGCGGAGTCGAGCTCCTCCTT 5676
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 593704122320400
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |