Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20pleuroti_20[genbank_20GCA_5F001721665.1_202016-09-08] 2,355 sequences; 38,137,656 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq1903 131 2e-25 >seq1903 Length=20131 Score = 131 bits (144), Expect = 2e-25 Identities = 455/700 (65%), Gaps = 15/700 (2%) Strand=Plus/Plus Query 53981 CCAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATA 54040 ||||||||||| | || ||||| | || ||| || || | || || || ||||| Sbjct 4984 CCAGGACATTCGTTGGGGCACATGAGCGTCCAGTCCAAGTTCTTCTCAACACGCTTCATG 5043 Query 54041 AAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGTTCCTCGTTTCCT 54100 ||||| || |||||||| ||||| | || | || | | | || || || || Sbjct 5044 AAGAGGTCGGGAATCCAGAGAGCAAGGAACAAGTCGCGAGCGCGGACCTCTTCCTTGCCG 5103 Query 54101 GTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATG 54160 ||||| ||||| |||||| | | | || | ||||| || || | ||| ||| Sbjct 5104 TGGTTCTTGCGGAGATCAAGGAACTCAAAGACGTCGGCGTGCCAGGGCTCGAGGTAGATG 5163 Query 54161 GTCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAA 54220 | | | | ||||| || ||||| || |||||||| | ||||| || ||||| || | Sbjct 5164 GCAAAAGCACCAGGACGCTTGTTACCACCCTGATCGACATATCTGGCAGTGTTGTTGAAC 5223 Query 54221 ACTCTCAACATTGGAATAATACCATTGGATGCACCATTGGTCCCGGAGATATAGCTTCCA 54280 |||| | ||| ||||||||||| ||||| | ||| ||||| || | || || || Sbjct 5224 ACTCGAAGCATGGGAATAATACCGTTGGAGGTACCGTTGGTGCCAGCAATGTAAGAGCCG 5283 Query 54281 CTGGCACGAAT--ATTACTAATTGATAGACCTATCCCCCCTGCCATTTTAGAGATTAATG 54338 ||||||| || | || | || || || || || |||||||| || || | | Sbjct 5284 GTGGCACGGATGCGGTGGACGTTCA-AG-CCGATACCACCAGCCATTTTGGAAATCATGG 5341 Query 54339 CGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAA 54398 | ||| || | || |||||||| ||||| |||||||| ||| |||||| | | | Sbjct 5342 CACATGTCTTCAGGGTGTCATAGATACCCTCGATACTATCGTCCTTCATGTCGACCAAGA 5401 Query 54399 AACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATA-AGGTAGGAGAAGCGTGC 54457 | || |||| ||| | || || || || || | ||| || || || || Sbjct 5402 AGCATGAGGACAGCTGGGCCTGCGGGGTACCGGCGTTGAACAGGGGTGGGGGAGGCATGG 5461 Query 54458 GTAAACCATTTTTCAGAAAGTAGATTGTACGTCTC---GATA-GCTGAGTCT-ATATCCC 54512 || || | || ||| | || ||||| ||||| || | ||| | | | | |||| Sbjct 5462 GTGAAGAACTTGCTAGACATGAGGTTGTATGTCTCCAGGACACGCTCAATGTCGTCTCCC 5521 Query 54513 ATTGATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGT 54572 |||| || || | || ||||| | ||||||||| || | ||||| |||||| Sbjct 5522 -CAGATG----CCAACAGACACCCGCATAATCATGTGCTGTGGCCGCTCAACAATCTTGC 5576 Query 54573 TGTTTATTTTCAGCAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAA 54632 | | ||||| | ||| || |||| ||| || || ||||| || | ||| | Sbjct 5577 CATCAAGCTTCAGAAGGTATGACCGCTCCAGAGTCTTGAAGCCAAAGTATTGGTAGTTGA 5636 Query 54633 AGTCTCGTTCGTAAATAATAACTGAGTTGAGTTTATCCTT 54672 ||||||| ||||| | ||| | |||| ||| | ||||| Sbjct 5637 AGTCTCGATCGTAGACAATGGCGGAGTCGAGCTCCTCCTT 5676 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593704122320400