Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20pleuroti_20[genbank_20GCA_5F001721665.1_202016-09-08] 2,355 sequences; 38,137,656 total letters Query= NC_001875.2 Length=131995 Score E Sequences producing significant alignments: (Bits) Value seq1667 113 4e-20 seq1790 96.9 3e-15 >seq1667 Length=31153 Score = 113 bits (124), Expect = 4e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || || || || | ||| |||| || | || |||||||| || ||||| ||||| | | Sbjct 22712 CCACCACGAAGGCGGAGAACCAGGTGGAGGGTAGACTCCTTCTGGATGTTGTAGTCGGAC 22653 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 || ||| || | ||||| || || ||||| ||| |||| || | ||||||||| || Sbjct 22652 AGAGTTCGGCCATCCTCGAGTTGCTTGCCAGCAAAAATCAGACGCTGCTGGTCAGGAGGA 22593 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128 | ||| |||||||| |||||| || || | | ||| ||||| | |||| Sbjct 22592 ATGCCCTCCTTGTCCTGGATCTTAGACTTGACGTTGTCGATGGTATCGGACGACTCCACC 22533 Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 || | ||| |||||||||||||| | || ||||| || |||||||| Sbjct 22532 TCGAGGGTGATGGTCTTGCCGGTGAGGGTCTTGACGAAGATTTGCAT 22486 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || || ||||| | ||| || | || | ||| ||||||||||||||| ||||| | Sbjct 23239 CCACCACGCAGACGGAGGACAAGGTGAAGTGTGCTCTCCTTTTGAATGTTGTAGTCGCTC 23180 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 | || | ||||||| ||||| || || ||| | || || | |||||| ||| ||| Sbjct 23179 AAAGTGCGACCGTCCTCGAGCTGCTTACCAGCAAAGATGAGACGCTGCTGATCCGGGGGG 23120 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128 | || |||||||| |||||| || || | | ||| || || | ||| Sbjct 23119 ATACCCTCCTTGTCCTGAATCTTTGACTTGACATTGTCGATGGTGTCTGATGACTCAACC 23060 Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 |||| || |||||||||||||| ||||| ||||| || || ||||| Sbjct 23059 TCCAATGTGATGGTCTTGCCGGTCAACGTCTTGACGAAGATCTGCAT 23013 Score = 87.8 bits (96), Expect = 2e-12 Identities = 131/186 (70%), Gaps = 0/186 (0%) Strand=Plus/Minus Query 20978 AGTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCCTCCAGCTGTTTGCC 21037 |||||||||||| |||||||| ||||| | |||||| || | ||||| ||||| ||||| Sbjct 22982 AGTGGACTCCTTCTGAATGTTGTAGTCGGAGAGGGTTCGGCCATCCTCAAGCTGCTTGCC 22923 Query 21038 CGCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCGGCGATCTTTTGTTT 21097 || | || | | ||||||||| || | || |||||||| |||||| || Sbjct 22922 GGCGAAGATCAAGCGCTGCTGGTCAGGAGGGATACCCTCCTTGTCCTGGATCTTGGACTT 22863 Query 21098 CACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTCTTGCCGGTTAACGT 21157 || | | | | |||||| | |||| || | ||| |||||||| ||||| | || Sbjct 22862 GACGTTGTCAATGGTATCAGATGACTCCACCTCGAGGGTGATGGTCTTTCCGGTGAGGGT 22803 Query 21158 TTTGAC 21163 ||||| Sbjct 22802 CTTGAC 22797 >seq1790 Length=95376 Score = 96.9 bits (106), Expect = 3e-15 Identities = 160/231 (69%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || || ||||| | || |||| || | || |||||||| || ||||| ||||| | Sbjct 27668 CCACCACGCAGGCGCAGGACCAGGTGGAGGGTAGACTCCTTCTGGATGTTGTAGTCGGAG 27727 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 |||||| || | ||||||||||| || || || | || | || |||||||||| ||| Sbjct 27728 AGGGTTCGGCCATCCTCCAGCTGCTTACCAGCGAAGATCAATCGCTGCTGGTCCGGGGGA 27787 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128 | ||| |||||||| |||||| || || | | ||| || || | |||| Sbjct 27788 ATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCGATGGTGTCGGAAGACTCCACC 27847 Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCATTTTG 21179 || | ||| || ||||| || || | || ||||| || || ||||| ||| Sbjct 27848 TCAAGGGTGATCGTCTTCCCCGTGAGGGTCTTGACGAAAATCTGCATCTTG 27898 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 422247080501180