Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20pleuroti_20[genbank_20GCA_5F001721665.1_202016-09-08] 2,355 sequences; 38,137,656 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq535 325 4e-84 seq1667 145 8e-30 seq1790 140 3e-28 seq2135 123 3e-23 >seq535 Length=62126 Score = 325 bits (360), Expect = 4e-84 Identities = 553/796 (69%), Gaps = 23/796 (3%) Strand=Plus/Minus Query 116636 ATGTGGCGCATGTACAAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTGGACCTG 116695 || |||| |||||||||||||||||||| || |||||||||| ||| ||| | || ||| Sbjct 15647 ATTTGGCAAATGTACAAAAAGGCCGAGGCCTCCTTCTGGACCGCCGAAGAGATTGATCTG 15588 Query 116696 TCCAAGGACACGAGCGACTGGGAG---CGCTTGAACGACAACGAGCGCCATTTCATCAAG 116752 |||||||| | ||||||| | ||| ||||||| ||||| | |||||| Sbjct 15587 TCCAAGGATCTGCACGACTGGAACAACCGCCTGAACGATGACGAGAAGTACTTCATCTCT 15528 Query 116753 CACGTGCTGGCCTTTTTCGCCGCCAGCGACGGCATCGTCAACGAGAATCTGGTCGAGCGT 116812 ||| | |||||||| || |||||| || ||||| ||||||||||| ||||||||||| Sbjct 15527 CACATCCTGGCCTTCTTTGCCGCCTCTGATGGCATTGTCAACGAGAACCTGGTCGAGCGC 15468 Query 116813 TTCGCTCAGGAGGTGCAGGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCAGATCGCCATG 116872 ||| ||||| ||| | ||||||| || |||||||||||||| |||||| ||| Sbjct 15467 TTCAGCGGCGAGGTCCAGATCCCCGAGGCTCGATGCTTCTACGGCTTCCAGATCATGATG 15408 Query 116873 GAGAACGTGCACTCGGAAATGTATTCGACCCTCATCGACACGTACGTGCGCTCTTCGGAG 116932 |||||| | ||||| || | || || ||||||||||| ||| | |||| Sbjct 15407 GAGAACATCCACTCCGAGACCTACTCCCTGCTCATCGACACCTACAT------CAAGGAG 15354 Query 116933 GAGA---AGCTCCGTT---TGTTGAACGCCATCGAGACGATGCCGTGCGT---CAAAGAG 116983 | | ||| | | | | || |||||||| ||||| || || ||| | |||| Sbjct 15353 AACAGCCAGCGCAGCTACCTCTTCAACGCCATTGAGACCATTCCTTGCATTCGCAAA--- 15297 Query 116984 AAGGCCGAGTGGGCGCTGCGCTGGATCGCCGGCAGAGAGGCCGCCTTCGGCGAGCGCCTG 117043 |||||||| ||||| | ||||| | || | | |||| | | |||||||| Sbjct 15296 AAGGCCGACTGGGCCATCAAGTGGATTCAGGACAAGAACTCTTCCTTTGCCCAGCGCCTG 15237 Query 117044 GTGGCCTTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCCGCCATATTTTGG 117103 || ||||| || |||||||||||| ||||||| || || ||| |||| || ||| Sbjct 15236 GTTGCCTTTGCCGCCGTCGAGGGCATCTTCTTCAGCGGTGCCTTTGCCTCCATCTTCTGG 15177 Query 117104 CTCAAGAAACGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAGCTCATCTCCAGGGAC 117163 ||||||| || || |||||||| || ||||| || ||||||||||||||| | || Sbjct 15176 GTCAAGAAGCGAGGTCTCATGCCTGGTCTGACCTTTTCCAACGAGCTCATCTCTCGTGAT 15117 Query 117164 GAGGGTCTGCATTGCGACTTTGCCTGTTTGCTGTTCAAGCATTTGGTGCAGCGACCGAGC 117223 ||||||||||| ||||||||||| ||||| | || | | | || | ||| Sbjct 15116 GAGGGTCTGCACACTGACTTTGCCTGCCTGCTGCACTCTCACCTCAAGAACCGTGCCAGC 15057 Query 117224 GCGGCGCGCGTCAGGGAGATCGTCACCGACGCGGTCGCCATCGAGCAGCGCTTCCTCACC 117283 || | || | || ||| |||||||||| ||| || |||||| ||| | ||| Sbjct 15056 AAGGAGATGATCCGTGACATCATCACCGACGCTGTCCGAATTGAGCAGGAGTTCTTGACC 14997 Query 117284 GAAGCGCTGCCGGTGCGTC-TGCTGGGACTCAATTGCGAAACGATGTCGCAATACATCGA 117342 || || || || |||| | |||| || | || | | |||| ||| ||||| || Sbjct 14996 GAGGCTCT-CCCCTGCGCCTTGCTTGGCATGAACTCCAGCCTGATGAAGCAGTACATTGA 14938 Query 117343 GTTCGTCGCCGACAGGCTGCTGCTCGAGCTGGTCGGCGCCAAGCACTACAACACGCCCAA 117402 ||| || |||||| | |||||| ||| || | | || ||| |||||| | |||| Sbjct 14937 GTTTGTTGCCGACCGCCTGCTGGTCGCTCTCGGCAACGAAAAGGTCTACAAGTCTTCCAA 14878 Query 117403 CCCGCTGGACTTTATG 117418 ||| | ||||| ||| Sbjct 14877 CCCCTTTGACTTCATG 14862 >seq1667 Length=31153 Score = 145 bits (160), Expect = 8e-30 Identities = 156/204 (76%), Gaps = 2/204 (1%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || || ||||| ||||| || |||||| |||| || ||| | || Sbjct 23241 ATGCAGATTTTCGTCAAGACTCTCACAGGCAAGACAATCACCCTCGAGGTGGAATCTTCC 23300 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | | |||| ||||| || |||| ||||| |||||||| || | ||||| Sbjct 23301 GACACCATCGACAACG-TCAAGTCCAAGATTCAGGACAAGGAGGGCATTCCTCCTGACCA 23359 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| || | |||| || || || |||||||| |||| |||||| | | ||||||||| Sbjct 23360 GCAGCGCTTGATCTTTGCTGGTAAGCAGCTGGAAGACGGTCGCACCTTGAGCGACTACAA 23419 Query 40869 CATCCAGAAGGAGGCCACGCTGCA 40892 ||||||||||||| ||||||||| Sbjct 23420 CATCCAGAAGGAGAGCACGCTGCA 23443 Score = 116 bits (128), Expect = 4e-21 Identities = 151/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || ||| | || ||||| |||||||| | || || || | | Sbjct 23013 ATGCAGATCTTCGTCAAGACGTTGACCGGCAAGACCATCACATTGGAGGTTGAGTCATCA 23072 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | | | | ||||| ||| |||| ||||| ||||| |||||| |||| ||| Sbjct 23073 GACACCATCGACAATGTCAAGTCAAAGATTCAGGACAAGGAGGGTATCCCCCCGGATCAG 23132 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || || ||||||| || || || ||||| || |||| ||||| | | |||||||||| Sbjct 23133 CAGCGTCTCATCTTTGCTGGTAAGCAGCTCGAGGACGGTCGCACTTTGAGCGACTACAAC 23192 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGT 40898 || || |||||| ||| || || || || Sbjct 23193 ATTCAAAAGGAGAGCACACTTCACCTTGT 23221 Score = 114 bits (126), Expect = 1e-20 Identities = 153/210 (73%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||||| ||||| || || ||||| ||||| ||||||||| |||| || || | || Sbjct 22486 ATGCAAATCTTCGTCAAGACCCTCACCGGCAAGACCATCACCCTCGAGGTGGAGTCGTCC 22545 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 || | | | | |||| ||||| || || | ||||| |||||||| || | ||||| Sbjct 22546 GATACCATCGACAACG-TCAAGTCTAAGATCCAGGACAAGGAGGGCATTCCTCCTGACCA 22604 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| || || || | || ||||| || || || || | || || || ||||||||| Sbjct 22605 GCAGCGTCTGATTTTTGCTGGCAAGCAACTCGAGGATGGCCGAACTCTGTCCGACTACAA 22664 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGT 40898 ||||||||||||| | || || || || || Sbjct 22665 CATCCAGAAGGAGTCTACCCTCCACCTGGT 22694 Score = 111 bits (122), Expect = 2e-19 Identities = 146/200 (73%), Gaps = 2/200 (1%) Strand=Plus/Plus Query 40700 TCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGCGTGC 40759 |||| || || ||||| || || ||||||||| |||| || || | | || | | | Sbjct 22795 TCGTCAAGACCCTCACCGGAAAGACCATCACCCTCGAGGTGGAGTCATCTGATACCATTG 22854 Query 40760 A-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTC 40818 | |||| ||||| || || | ||||| ||||| ||||| | |||||||| || | Sbjct 22855 ACAACG-TCAAGTCCAAGATCCAGGACAAGGAGGGTATCCCTCCTGACCAGCAGCGCTTG 22913 Query 40819 ATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAG 40878 |||| ||| ||||| ||||| || || | || |||||| |||||||||||| |||||| Sbjct 22914 ATCTTCGCCGGCAAGCAGCTTGAGGATGGCCGAACCCTCTCCGACTACAACATTCAGAAG 22973 Query 40879 GAGGCCACGCTGCATCTAGT 40898 ||| |||| || || || || Sbjct 22974 GAGTCCACTCTCCACCTTGT 22993 >seq1790 Length=95376 Score = 140 bits (154), Expect = 3e-28 Identities = 169/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 40687 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCC 40746 || ||||| || ||||| || || |||||||| || || |||||| | || || || | Sbjct 27897 AAGATGCAGATTTTCGTCAAGACCCTCACGGGGAAGACGATCACCCTTGAGGTGGAGTCT 27838 Query 40747 ACCGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGAC 40806 |||||| | | | | ||||| || || | ||||| |||||||| ||| ||||| Sbjct 27837 TCCGACACCATCGACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGCATTCCCCCGGAC 27778 Query 40807 CAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTAC 40866 ||||| ||| | |||| ||| || || |||||||| || | || |||||| ||||||| Sbjct 27777 CAGCAGCGATTGATCTTCGCTGGTAAGCAGCTGGAGGATGGCCGAACCCTCTCCGACTAC 27718 Query 40867 AACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916 ||||||||||||||| | || || || || || ||||| || | || || Sbjct 27717 AACATCCAGAAGGAGTCTACCCTCCACCTGGTCCTGCGCCTGCGTGGTGG 27668 >seq2135 Length=79206 Score = 123 bits (136), Expect = 3e-23 Identities = 136/181 (75%), Gaps = 0/181 (0%) Strand=Plus/Plus Query 40699 TTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGCGTG 40758 ||||| || || || |||||||| ||||||||| | || ||||| || |||||| | Sbjct 76292 TTCGTGAAGACCCTGACGGGCAAGACCATCACCCTTGAGGTCGAGTCCTCCGACACGATC 76351 Query 40759 CAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTC 40818 | | ||||| || || | ||||| |||||||| ||| |||||||||| ||| | Sbjct 76352 GACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGCATTCCCCCGGACCAGCAGCGATTG 76411 Query 40819 ATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAG 40878 |||| || ||||| ||||| || || | |||||||| ||||||||||||||||||| Sbjct 76412 ATCTTTGCTGGCAAGCAGCTCGAGGATGGCCGCACCCTTTCCGACTACAACATCCAGAAG 76471 Query 40879 G 40879 | Sbjct 76472 G 76472 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515204033234800