Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichoderma_20pleuroti_20[genbank_20GCA_5F001721665.1_202016-09-08]
2,355 sequences; 38,137,656 total letters
Query= NC_001973.1
Length=161046
Score E
Sequences producing significant alignments: (Bits) Value
seq535 325 4e-84
seq1667 145 8e-30
seq1790 140 3e-28
seq2135 123 3e-23
>seq535
Length=62126
Score = 325 bits (360), Expect = 4e-84
Identities = 553/796 (69%), Gaps = 23/796 (3%)
Strand=Plus/Minus
Query 116636 ATGTGGCGCATGTACAAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTGGACCTG 116695
|| |||| |||||||||||||||||||| || |||||||||| ||| ||| | || |||
Sbjct 15647 ATTTGGCAAATGTACAAAAAGGCCGAGGCCTCCTTCTGGACCGCCGAAGAGATTGATCTG 15588
Query 116696 TCCAAGGACACGAGCGACTGGGAG---CGCTTGAACGACAACGAGCGCCATTTCATCAAG 116752
|||||||| | ||||||| | ||| ||||||| ||||| | ||||||
Sbjct 15587 TCCAAGGATCTGCACGACTGGAACAACCGCCTGAACGATGACGAGAAGTACTTCATCTCT 15528
Query 116753 CACGTGCTGGCCTTTTTCGCCGCCAGCGACGGCATCGTCAACGAGAATCTGGTCGAGCGT 116812
||| | |||||||| || |||||| || ||||| ||||||||||| |||||||||||
Sbjct 15527 CACATCCTGGCCTTCTTTGCCGCCTCTGATGGCATTGTCAACGAGAACCTGGTCGAGCGC 15468
Query 116813 TTCGCTCAGGAGGTGCAGGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCAGATCGCCATG 116872
||| ||||| ||| | ||||||| || |||||||||||||| |||||| |||
Sbjct 15467 TTCAGCGGCGAGGTCCAGATCCCCGAGGCTCGATGCTTCTACGGCTTCCAGATCATGATG 15408
Query 116873 GAGAACGTGCACTCGGAAATGTATTCGACCCTCATCGACACGTACGTGCGCTCTTCGGAG 116932
|||||| | ||||| || | || || ||||||||||| ||| | ||||
Sbjct 15407 GAGAACATCCACTCCGAGACCTACTCCCTGCTCATCGACACCTACAT------CAAGGAG 15354
Query 116933 GAGA---AGCTCCGTT---TGTTGAACGCCATCGAGACGATGCCGTGCGT---CAAAGAG 116983
| | ||| | | | | || |||||||| ||||| || || ||| | ||||
Sbjct 15353 AACAGCCAGCGCAGCTACCTCTTCAACGCCATTGAGACCATTCCTTGCATTCGCAAA--- 15297
Query 116984 AAGGCCGAGTGGGCGCTGCGCTGGATCGCCGGCAGAGAGGCCGCCTTCGGCGAGCGCCTG 117043
|||||||| ||||| | ||||| | || | | |||| | | ||||||||
Sbjct 15296 AAGGCCGACTGGGCCATCAAGTGGATTCAGGACAAGAACTCTTCCTTTGCCCAGCGCCTG 15237
Query 117044 GTGGCCTTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCCGCCATATTTTGG 117103
|| ||||| || |||||||||||| ||||||| || || ||| |||| || |||
Sbjct 15236 GTTGCCTTTGCCGCCGTCGAGGGCATCTTCTTCAGCGGTGCCTTTGCCTCCATCTTCTGG 15177
Query 117104 CTCAAGAAACGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAGCTCATCTCCAGGGAC 117163
||||||| || || |||||||| || ||||| || ||||||||||||||| | ||
Sbjct 15176 GTCAAGAAGCGAGGTCTCATGCCTGGTCTGACCTTTTCCAACGAGCTCATCTCTCGTGAT 15117
Query 117164 GAGGGTCTGCATTGCGACTTTGCCTGTTTGCTGTTCAAGCATTTGGTGCAGCGACCGAGC 117223
||||||||||| ||||||||||| ||||| | || | | | || | |||
Sbjct 15116 GAGGGTCTGCACACTGACTTTGCCTGCCTGCTGCACTCTCACCTCAAGAACCGTGCCAGC 15057
Query 117224 GCGGCGCGCGTCAGGGAGATCGTCACCGACGCGGTCGCCATCGAGCAGCGCTTCCTCACC 117283
|| | || | || ||| |||||||||| ||| || |||||| ||| | |||
Sbjct 15056 AAGGAGATGATCCGTGACATCATCACCGACGCTGTCCGAATTGAGCAGGAGTTCTTGACC 14997
Query 117284 GAAGCGCTGCCGGTGCGTC-TGCTGGGACTCAATTGCGAAACGATGTCGCAATACATCGA 117342
|| || || || |||| | |||| || | || | | |||| ||| ||||| ||
Sbjct 14996 GAGGCTCT-CCCCTGCGCCTTGCTTGGCATGAACTCCAGCCTGATGAAGCAGTACATTGA 14938
Query 117343 GTTCGTCGCCGACAGGCTGCTGCTCGAGCTGGTCGGCGCCAAGCACTACAACACGCCCAA 117402
||| || |||||| | |||||| ||| || | | || ||| |||||| | ||||
Sbjct 14937 GTTTGTTGCCGACCGCCTGCTGGTCGCTCTCGGCAACGAAAAGGTCTACAAGTCTTCCAA 14878
Query 117403 CCCGCTGGACTTTATG 117418
||| | ||||| |||
Sbjct 14877 CCCCTTTGACTTCATG 14862
>seq1667
Length=31153
Score = 145 bits (160), Expect = 8e-30
Identities = 156/204 (76%), Gaps = 2/204 (1%)
Strand=Plus/Plus
Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749
||||| || ||||| || || ||||| ||||| || |||||| |||| || ||| | ||
Sbjct 23241 ATGCAGATTTTCGTCAAGACTCTCACAGGCAAGACAATCACCCTCGAGGTGGAATCTTCC 23300
Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808
|||| | | | |||| ||||| || |||| ||||| |||||||| || | |||||
Sbjct 23301 GACACCATCGACAACG-TCAAGTCCAAGATTCAGGACAAGGAGGGCATTCCTCCTGACCA 23359
Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868
||| || | |||| || || || |||||||| |||| |||||| | | |||||||||
Sbjct 23360 GCAGCGCTTGATCTTTGCTGGTAAGCAGCTGGAAGACGGTCGCACCTTGAGCGACTACAA 23419
Query 40869 CATCCAGAAGGAGGCCACGCTGCA 40892
||||||||||||| |||||||||
Sbjct 23420 CATCCAGAAGGAGAGCACGCTGCA 23443
Score = 116 bits (128), Expect = 4e-21
Identities = 151/209 (72%), Gaps = 0/209 (0%)
Strand=Plus/Plus
Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749
||||| || ||||| || ||| | || ||||| |||||||| | || || || | |
Sbjct 23013 ATGCAGATCTTCGTCAAGACGTTGACCGGCAAGACCATCACATTGGAGGTTGAGTCATCA 23072
Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809
|||| | | | | ||||| ||| |||| ||||| ||||| |||||| |||| |||
Sbjct 23073 GACACCATCGACAATGTCAAGTCAAAGATTCAGGACAAGGAGGGTATCCCCCCGGATCAG 23132
Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869
|| || ||||||| || || || ||||| || |||| ||||| | | ||||||||||
Sbjct 23133 CAGCGTCTCATCTTTGCTGGTAAGCAGCTCGAGGACGGTCGCACTTTGAGCGACTACAAC 23192
Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGT 40898
|| || |||||| ||| || || || ||
Sbjct 23193 ATTCAAAAGGAGAGCACACTTCACCTTGT 23221
Score = 114 bits (126), Expect = 1e-20
Identities = 153/210 (73%), Gaps = 2/210 (1%)
Strand=Plus/Plus
Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749
|||||||| ||||| || || ||||| ||||| ||||||||| |||| || || | ||
Sbjct 22486 ATGCAAATCTTCGTCAAGACCCTCACCGGCAAGACCATCACCCTCGAGGTGGAGTCGTCC 22545
Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808
|| | | | | |||| ||||| || || | ||||| |||||||| || | |||||
Sbjct 22546 GATACCATCGACAACG-TCAAGTCTAAGATCCAGGACAAGGAGGGCATTCCTCCTGACCA 22604
Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868
||| || || || | || ||||| || || || || | || || || |||||||||
Sbjct 22605 GCAGCGTCTGATTTTTGCTGGCAAGCAACTCGAGGATGGCCGAACTCTGTCCGACTACAA 22664
Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGT 40898
||||||||||||| | || || || || ||
Sbjct 22665 CATCCAGAAGGAGTCTACCCTCCACCTGGT 22694
Score = 111 bits (122), Expect = 2e-19
Identities = 146/200 (73%), Gaps = 2/200 (1%)
Strand=Plus/Plus
Query 40700 TCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGCGTGC 40759
|||| || || ||||| || || ||||||||| |||| || || | | || | | |
Sbjct 22795 TCGTCAAGACCCTCACCGGAAAGACCATCACCCTCGAGGTGGAGTCATCTGATACCATTG 22854
Query 40760 A-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTC 40818
| |||| ||||| || || | ||||| ||||| ||||| | |||||||| || |
Sbjct 22855 ACAACG-TCAAGTCCAAGATCCAGGACAAGGAGGGTATCCCTCCTGACCAGCAGCGCTTG 22913
Query 40819 ATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAG 40878
|||| ||| ||||| ||||| || || | || |||||| |||||||||||| ||||||
Sbjct 22914 ATCTTCGCCGGCAAGCAGCTTGAGGATGGCCGAACCCTCTCCGACTACAACATTCAGAAG 22973
Query 40879 GAGGCCACGCTGCATCTAGT 40898
||| |||| || || || ||
Sbjct 22974 GAGTCCACTCTCCACCTTGT 22993
>seq1790
Length=95376
Score = 140 bits (154), Expect = 3e-28
Identities = 169/230 (73%), Gaps = 0/230 (0%)
Strand=Plus/Minus
Query 40687 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCC 40746
|| ||||| || ||||| || || |||||||| || || |||||| | || || || |
Sbjct 27897 AAGATGCAGATTTTCGTCAAGACCCTCACGGGGAAGACGATCACCCTTGAGGTGGAGTCT 27838
Query 40747 ACCGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGAC 40806
|||||| | | | | ||||| || || | ||||| |||||||| ||| |||||
Sbjct 27837 TCCGACACCATCGACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGCATTCCCCCGGAC 27778
Query 40807 CAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTAC 40866
||||| ||| | |||| ||| || || |||||||| || | || |||||| |||||||
Sbjct 27777 CAGCAGCGATTGATCTTCGCTGGTAAGCAGCTGGAGGATGGCCGAACCCTCTCCGACTAC 27718
Query 40867 AACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916
||||||||||||||| | || || || || || ||||| || | || ||
Sbjct 27717 AACATCCAGAAGGAGTCTACCCTCCACCTGGTCCTGCGCCTGCGTGGTGG 27668
>seq2135
Length=79206
Score = 123 bits (136), Expect = 3e-23
Identities = 136/181 (75%), Gaps = 0/181 (0%)
Strand=Plus/Plus
Query 40699 TTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGCGTG 40758
||||| || || || |||||||| ||||||||| | || ||||| || |||||| |
Sbjct 76292 TTCGTGAAGACCCTGACGGGCAAGACCATCACCCTTGAGGTCGAGTCCTCCGACACGATC 76351
Query 40759 CAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTC 40818
| | ||||| || || | ||||| |||||||| ||| |||||||||| ||| |
Sbjct 76352 GACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGCATTCCCCCGGACCAGCAGCGATTG 76411
Query 40819 ATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAG 40878
|||| || ||||| ||||| || || | |||||||| |||||||||||||||||||
Sbjct 76412 ATCTTTGCTGGCAAGCAGCTCGAGGATGGCCGCACCCTTTCCGACTACAACATCCAGAAG 76471
Query 40879 G 40879
|
Sbjct 76472 G 76472
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 515204033234800
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |