Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20pleuroti_20[genbank_20GCA_5F001721665.1_202016-09-08] 2,355 sequences; 38,137,656 total letters Query= NC_002169.1 Length=135611 Score E Sequences producing significant alignments: (Bits) Value seq1667 140 3e-28 seq1790 111 1e-19 seq2135 91.5 1e-13 >seq1667 Length=31153 Score = 140 bits (154), Expect = 3e-28 Identities = 146/192 (76%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 118547 CTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTA 118606 ||| |||||||||||||| ||||||| |||||| ||||||||||| || ||||| | Sbjct 23204 CTCCTTTTGAATGTTGTAGTCGCTCAAAGTGCGACCGTCCTCGAGCTGCTTACCAGCAAA 23145 Query 118607 GATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTG 118666 |||||||||||||||||| || || || ||||||||||| ||| ||| || || | Sbjct 23144 GATGAGACGCTGCTGATCCGGGGGGATACCCTCCTTGTCCTGAATCTTTGACTTGACATT 23085 Query 118667 TTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTAC 118726 |||| |||||| | ||| ||||| | || | || |||||||||| || || || Sbjct 23084 GTCGATGGTGTCTGATGACTCAACCTCCAATGTGATGGTCTTGCCGGTCAACGTCTTGAC 23025 Query 118727 AAAAATCTGCAT 118738 || |||||||| Sbjct 23024 GAAGATCTGCAT 23013 Score = 123 bits (136), Expect = 2e-23 Identities = 154/211 (73%), Gaps = 0/211 (0%) Strand=Plus/Minus Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589 |||| ||||| |||||||| || || |||||||| ||| || ||| || ||||||| Sbjct 22694 ACCAGGTGGAGGGTAGACTCCTTCTGGATGTTGTAGTCGGACAGAGTTCGGCCATCCTCG 22635 Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTA 118649 || || || ||||| | || ||||||||||| || ||||| |||||||||||||| Sbjct 22634 AGTTGCTTGCCAGCAAAAATCAGACGCTGCTGGTCAGGAGGAATGCCCTCCTTGTCCTGG 22575 Query 118650 ATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTG 118709 || || || || | |||| ||| || | ||| ||||||| ||| | || ||| Sbjct 22574 ATCTTAGACTTGACGTTGTCGATGGTATCGGACGACTCCACCTCGAGGGTGATGGTCTTG 22515 Query 118710 CCGGTCAGAGTTTTTACAAAAATCTGCATGG 118740 ||||| || || || || || || ||||||| Sbjct 22514 CCGGTGAGGGTCTTGACGAAGATTTGCATGG 22484 Score = 118 bits (130), Expect = 9e-22 Identities = 152/210 (72%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 118529 CACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTC 118588 ||||||||| | || ||| || || |||||||| ||||||| ||||| || || Sbjct 23450 CACCAAGTGCAGCGTGCTCTCCTTCTGGATGTTGTAGTCGCTCAAGGTGCGACCGTCTTC 23391 Query 118589 GAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGT 118648 ||||| || ||||| |||| | |||||||| || ||||| |||||||||||||| Sbjct 23390 CAGCTGCTTACCAGCAAAGATCAAGCGCTGCTGGTCAGGAGGAATGCCCTCCTTGTCCTG 23331 Query 118649 AATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTT 118708 ||| || || || | |||| |||||| | || ||||||| ||| | || || Sbjct 23330 AATCTTGGACTTGACGTTGTCGATGGTGTCGGAAGATTCCACCTCGAGGGTGATTGTCTT 23271 Query 118709 GCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 ||| || ||||| || || ||||||||||| Sbjct 23270 GCCTGTGAGAGTCTTGACGAAAATCTGCAT 23241 >seq1790 Length=95376 Score = 111 bits (122), Expect = 1e-19 Identities = 150/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589 |||| ||||| |||||||| || || |||||||| ||| | || || |||||| Sbjct 27686 ACCAGGTGGAGGGTAGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTTCGGCCATCCTCC 27745 Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTA 118649 ||||| || |||||| |||| | |||||||| || || || |||||||||||||| Sbjct 27746 AGCTGCTTACCAGCGAAGATCAATCGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGG 27805 Query 118650 ATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTG 118709 || || || || | |||| |||||| | ||| ||||| | ||| | ||| || Sbjct 27806 ATCTTGGACTTGACATTGTCGATGGTGTCGGAAGACTCCACCTCAAGGGTGATCGTCTTC 27865 Query 118710 CCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 || || || || || || ||||||||||| Sbjct 27866 CCCGTGAGGGTCTTGACGAAAATCTGCAT 27894 >seq2135 Length=79206 Score = 91.5 bits (100), Expect = 1e-13 Identities = 128/180 (71%), Gaps = 0/180 (0%) Strand=Plus/Minus Query 118551 TTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATG 118610 || || |||||||| ||| | ||||| |||||||||||| || ||||| |||| Sbjct 76470 TTCTGGATGTTGTAGTCGGAAAGGGTGCGGCCATCCTCGAGCTGCTTGCCAGCAAAGATC 76411 Query 118611 AGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCG 118670 | |||||||| || || || |||||||||||||| || || || || | ||| Sbjct 76410 AATCGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCG 76351 Query 118671 ACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAA 118730 | ||||| | | ||||||||| | ||| | || ||||| ||||| || || || ||| Sbjct 76350 ATCGTGTCGGAGGACTCGACCTCAAGGGTGATGGTCTTGCCCGTCAGGGTCTTCACGAAA 76291 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433817948389660