Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichoderma_20pleuroti_20[genbank_20GCA_5F001721665.1_202016-09-08]
2,355 sequences; 38,137,656 total letters
Query= NC_002331.1
Length=178733
Score E
Sequences producing significant alignments: (Bits) Value
seq1667 122 1e-22
seq1790 100 3e-16
seq2135 87.8 2e-12
>seq1667
Length=31153
Score = 122 bits (134), Expect = 1e-22
Identities = 161/218 (74%), Gaps = 4/218 (2%)
Strand=Plus/Minus
Query 42968 ACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTC 43027
||| | |||||| |||| ||||||||||| || || ||||| || || || || |
Sbjct 23456 ACGAAGCACCAAGTGCAGCGTGCTCTCCTTCTGGATGTTGTAGTCGCTCAAGGTGCGACC 23397
Query 43028 GTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTT 43087
||| || |||||||||||||| || || | ||||||||||| | || | || ||||||
Sbjct 23396 GTCTTCCAGCTGCTTACCAGCAAAGATCAAGCGCTGCTGGTCAGGAGGAATGCCCTCCTT 23337
Query 43088 GTCCATGATTTTTTG-TTTGAGCGTCG-CCACCGTGTCGCTCGATTCCACATCGACCGTG 43145
|||| ||| | || | |||| ||| | | | |||||| |||||||| |||| |||
Sbjct 23336 GTCC-TGAATCTTGGACTTGA-CGTTGTCGATGGTGTCGGAAGATTCCACCTCGAGGGTG 23279
Query 43146 ATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183
|| || ||||| || || ||||| || || || |||||
Sbjct 23278 ATTGTCTTGCCTGTGAGAGTCTTGACGAAAATCTGCAT 23241
Score = 118 bits (130), Expect = 1e-21
Identities = 147/199 (74%), Gaps = 2/199 (1%)
Strand=Plus/Minus
Query 42986 TGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACC 43045
|||||||||||||||||| ||||| || || ||| || |||| || |||||||||||
Sbjct 23210 TGTGCTCTCCTTTTGAATGTTGTAGTCGCTCAAAGTGCGACCGTCCTCGAGCTGCTTACC 23151
Query 43046 AGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTG-TT 43104
||| || ||||| |||||||| || | || | | |||||||||| ||| | |||| |
Sbjct 23150 AGCAAAGATGAGACGCTGCTGATCCGGGGGGATACCCTCCTTGTCC-TGAATCTTTGACT 23092
Query 43105 TGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCG 43164
||| | | | ||||| || || || || | |||||||| ||||| || | ||
Sbjct 23091 TGACATTGTCGATGGTGTCTGATGACTCAACCTCCAATGTGATGGTCTTGCCGGTCAACG 23032
Query 43165 TCTTTACAAAGATTTGCAT 43183
|||| || ||||| |||||
Sbjct 23031 TCTTGACGAAGATCTGCAT 23013
Score = 116 bits (128), Expect = 4e-21
Identities = 143/193 (74%), Gaps = 2/193 (1%)
Strand=Plus/Minus
Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051
|||||| || || ||||| || | |||||| || | || || || ||||| ||||| ||
Sbjct 22677 CTCCTTCTGGATGTTGTAGTCGGACAGAGTTCGGCCATCCTCGAGTTGCTTGCCAGCAAA 22618
Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 43111
|| || ||||||||||| | || | || |||||||||| ||| || |||| |||
Sbjct 22617 AATCAGACGCTGCTGGTCAGGAGGAATGCCCTCCTTGTCCTGGATCTTAGACTTGA-CGT 22559
Query 43112 CGCC-ACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTA 43170
| | | || ||| ||| ||||| |||| |||||||| ||||| || || ||||| |
Sbjct 22558 TGTCGATGGTATCGGACGACTCCACCTCGAGGGTGATGGTCTTGCCGGTGAGGGTCTTGA 22499
Query 43171 CAAAGATTTGCAT 43183
| |||||||||||
Sbjct 22498 CGAAGATTTGCAT 22486
>seq1790
Length=95376
Score = 100 bits (110), Expect = 3e-16
Identities = 139/195 (71%), Gaps = 0/195 (0%)
Strand=Plus/Plus
Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051
|||||| || || ||||| || | || || || | || || |||||||||||||||||
Sbjct 27703 CTCCTTCTGGATGTTGTAGTCGGAGAGGGTTCGGCCATCCTCCAGCTGCTTACCAGCGAA 27762
Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 43111
|| | |||||||||||| | || | || |||||||||| ||| || |||| |
Sbjct 27763 GATCAATCGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTGGACTTGACATT 27822
Query 43112 CGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTAC 43171
| | |||||| || ||||| || | ||||| || || ||||| || ||||| ||
Sbjct 27823 GTCGATGGTGTCGGAAGACTCCACCTCAAGGGTGATCGTCTTCCCCGTGAGGGTCTTGAC 27882
Query 43172 AAAGATTTGCATTTT 43186
|| || ||||| ||
Sbjct 27883 GAAAATCTGCATCTT 27897
>seq2135
Length=79206
Score = 87.8 bits (96), Expect = 2e-12
Identities = 128/181 (71%), Gaps = 0/181 (0%)
Strand=Plus/Minus
Query 42994 CCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATA 43053
|||| || || ||||| || | || || || | || || |||||||| ||||| || |
Sbjct 76472 CCTTCTGGATGTTGTAGTCGGAAAGGGTGCGGCCATCCTCGAGCTGCTTGCCAGCAAAGA 76413
Query 43054 TGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCG 43113
| | |||||||||||| | || | || |||||||||| ||| || |||| |
Sbjct 76412 TCAATCGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGT 76353
Query 43114 CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAA 43173
| | ||||||| || || || || | |||||||| |||||||| || ||||| || |
Sbjct 76352 CGATCGTGTCGGAGGACTCGACCTCAAGGGTGATGGTCTTGCCCGTCAGGGTCTTCACGA 76293
Query 43174 A 43174
|
Sbjct 76292 A 76292
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 571800767119400
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |