Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20pleuroti_20[genbank_20GCA_5F001721665.1_202016-09-08] 2,355 sequences; 38,137,656 total letters Query= NC_002331.1 Length=178733 Score E Sequences producing significant alignments: (Bits) Value seq1667 122 1e-22 seq1790 100 3e-16 seq2135 87.8 2e-12 >seq1667 Length=31153 Score = 122 bits (134), Expect = 1e-22 Identities = 161/218 (74%), Gaps = 4/218 (2%) Strand=Plus/Minus Query 42968 ACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTC 43027 ||| | |||||| |||| ||||||||||| || || ||||| || || || || | Sbjct 23456 ACGAAGCACCAAGTGCAGCGTGCTCTCCTTCTGGATGTTGTAGTCGCTCAAGGTGCGACC 23397 Query 43028 GTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTT 43087 ||| || |||||||||||||| || || | ||||||||||| | || | || |||||| Sbjct 23396 GTCTTCCAGCTGCTTACCAGCAAAGATCAAGCGCTGCTGGTCAGGAGGAATGCCCTCCTT 23337 Query 43088 GTCCATGATTTTTTG-TTTGAGCGTCG-CCACCGTGTCGCTCGATTCCACATCGACCGTG 43145 |||| ||| | || | |||| ||| | | | |||||| |||||||| |||| ||| Sbjct 23336 GTCC-TGAATCTTGGACTTGA-CGTTGTCGATGGTGTCGGAAGATTCCACCTCGAGGGTG 23279 Query 43146 ATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 || || ||||| || || ||||| || || || ||||| Sbjct 23278 ATTGTCTTGCCTGTGAGAGTCTTGACGAAAATCTGCAT 23241 Score = 118 bits (130), Expect = 1e-21 Identities = 147/199 (74%), Gaps = 2/199 (1%) Strand=Plus/Minus Query 42986 TGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACC 43045 |||||||||||||||||| ||||| || || ||| || |||| || ||||||||||| Sbjct 23210 TGTGCTCTCCTTTTGAATGTTGTAGTCGCTCAAAGTGCGACCGTCCTCGAGCTGCTTACC 23151 Query 43046 AGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTG-TT 43104 ||| || ||||| |||||||| || | || | | |||||||||| ||| | |||| | Sbjct 23150 AGCAAAGATGAGACGCTGCTGATCCGGGGGGATACCCTCCTTGTCC-TGAATCTTTGACT 23092 Query 43105 TGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCG 43164 ||| | | | ||||| || || || || | |||||||| ||||| || | || Sbjct 23091 TGACATTGTCGATGGTGTCTGATGACTCAACCTCCAATGTGATGGTCTTGCCGGTCAACG 23032 Query 43165 TCTTTACAAAGATTTGCAT 43183 |||| || ||||| ||||| Sbjct 23031 TCTTGACGAAGATCTGCAT 23013 Score = 116 bits (128), Expect = 4e-21 Identities = 143/193 (74%), Gaps = 2/193 (1%) Strand=Plus/Minus Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051 |||||| || || ||||| || | |||||| || | || || || ||||| ||||| || Sbjct 22677 CTCCTTCTGGATGTTGTAGTCGGACAGAGTTCGGCCATCCTCGAGTTGCTTGCCAGCAAA 22618 Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 43111 || || ||||||||||| | || | || |||||||||| ||| || |||| ||| Sbjct 22617 AATCAGACGCTGCTGGTCAGGAGGAATGCCCTCCTTGTCCTGGATCTTAGACTTGA-CGT 22559 Query 43112 CGCC-ACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTA 43170 | | | || ||| ||| ||||| |||| |||||||| ||||| || || ||||| | Sbjct 22558 TGTCGATGGTATCGGACGACTCCACCTCGAGGGTGATGGTCTTGCCGGTGAGGGTCTTGA 22499 Query 43171 CAAAGATTTGCAT 43183 | ||||||||||| Sbjct 22498 CGAAGATTTGCAT 22486 >seq1790 Length=95376 Score = 100 bits (110), Expect = 3e-16 Identities = 139/195 (71%), Gaps = 0/195 (0%) Strand=Plus/Plus Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051 |||||| || || ||||| || | || || || | || || ||||||||||||||||| Sbjct 27703 CTCCTTCTGGATGTTGTAGTCGGAGAGGGTTCGGCCATCCTCCAGCTGCTTACCAGCGAA 27762 Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 43111 || | |||||||||||| | || | || |||||||||| ||| || |||| | Sbjct 27763 GATCAATCGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTGGACTTGACATT 27822 Query 43112 CGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTAC 43171 | | |||||| || ||||| || | ||||| || || ||||| || ||||| || Sbjct 27823 GTCGATGGTGTCGGAAGACTCCACCTCAAGGGTGATCGTCTTCCCCGTGAGGGTCTTGAC 27882 Query 43172 AAAGATTTGCATTTT 43186 || || ||||| || Sbjct 27883 GAAAATCTGCATCTT 27897 >seq2135 Length=79206 Score = 87.8 bits (96), Expect = 2e-12 Identities = 128/181 (71%), Gaps = 0/181 (0%) Strand=Plus/Minus Query 42994 CCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATA 43053 |||| || || ||||| || | || || || | || || |||||||| ||||| || | Sbjct 76472 CCTTCTGGATGTTGTAGTCGGAAAGGGTGCGGCCATCCTCGAGCTGCTTGCCAGCAAAGA 76413 Query 43054 TGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCG 43113 | | |||||||||||| | || | || |||||||||| ||| || |||| | Sbjct 76412 TCAATCGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGT 76353 Query 43114 CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAA 43173 | | ||||||| || || || || | |||||||| |||||||| || ||||| || | Sbjct 76352 CGATCGTGTCGGAGGACTCGACCTCAAGGGTGATGGTCTTGCCCGTCAGGGTCTTCACGA 76293 Query 43174 A 43174 | Sbjct 76292 A 76292 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 571800767119400