Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20pleuroti_20[genbank_20GCA_5F001721665.1_202016-09-08] 2,355 sequences; 38,137,656 total letters Query= NC_002687.1 Length=335593 Score E Sequences producing significant alignments: (Bits) Value seq1903 102 2e-16 >seq1903 Length=20131 Score = 102 bits (112), Expect = 2e-16 Identities = 280/422 (66%), Gaps = 8/422 (2%) Strand=Plus/Minus Query 248758 GTCATTCAGGACAACGCGCACCTCCTGGACGGCGCGATTGACTACGGCAAAGATTTGGAG 248817 ||||| | | |||| | | | ||| ||| ||| |||| ||||| ||| || | Sbjct 5688 GTCATGCGGCACAAGGAGGAGCTC---GACTCCGCCATTGTCTACGATCGAGACTTCAAC 5632 Query 248818 TACGATTTCTTTGCTTTCAAAACGCTGGAGAAATCGTATCTCCTCAAAATTGATGGCAAG 248877 ||| | | ||||| ||||| || |||||| || || || || || ||||||||||| Sbjct 5631 TACCAATACTTTGGCTTCAAGACTCTGGAGCGGTCATACCTTCTGAAGCTTGATGGCAAG 5572 Query 248878 ATCGTGGAACGAATTCAGCACATGTTGATGCGAGTGGCTGTCGGGATTCACAAGGATGAC 248937 || || || || ||||||||| | ||||| ||| |||| || || || ||| Sbjct 5571 ATTGTTGAGCGGCCACAGCACATGATTATGCGGGTGTCTGTTGGCATCTGGGGAGACGAC 5512 Query 248938 ATAGAGAGCGTGCTCGAGACGTACACCGGAATGAGT-GAACGCTGGATGACACATGCCAC 248996 || ||| | || || ||||| |||| | ||| | | | | | | || |||||| | Sbjct 5511 ATTGAGCGTGTCCTGGAGACATACAACCTCATGTCTAGCAAG-TTCTTCACCCATGCCTC 5453 Query 248997 ACCGA-CGCTCTTCAACGCCGGTACCGTCAACAATCAGCTGAGCTCGTGCTTTCTTCTTG 249055 || | | || ||||||||||||||| | |||||| ||| ||||| | | | Sbjct 5452 CCCCACCCCTGTTCAACGCCGGTACCCCGCAGGCCCAGCTGTCCTCATGCTTCTTGGTCG 5393 Query 249056 CCATGCAAGACGACTCTGTCGACGGCATTTATGACACGCTTAA-ACAGACGGCGAAGATT 249114 |||| | ||||| | |||| || || |||||||| || || ||| || | |||| Sbjct 5392 ACATGAAGGACGATAGTATCGAGGGTATCTATGACACCCTGAAGACA-TGTGCCATGATT 5334 Query 249115 TCTAAATTCGCGGGCGGAATCGGTCTCTCCGTCTCCAACATCCGAGCGAAGGGTTCGTAC 249174 || ||| | || || || ||||| | |||| | |||||| || | || || ||| Sbjct 5333 TCCAAAATGGCTGGTGGTATCGGCTTGAACGTCCACCGCATCCGTGCCACCGGCTCTTAC 5274 Query 249175 AT 249176 || Sbjct 5273 AT 5272 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1073734000776640