Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichoderma_20pleuroti_20[genbank_20GCA_5F001721665.1_202016-09-08]
2,355 sequences; 38,137,656 total letters
Query= NC_002687.1
Length=335593
Score E
Sequences producing significant alignments: (Bits) Value
seq1903 102 2e-16
>seq1903
Length=20131
Score = 102 bits (112), Expect = 2e-16
Identities = 280/422 (66%), Gaps = 8/422 (2%)
Strand=Plus/Minus
Query 248758 GTCATTCAGGACAACGCGCACCTCCTGGACGGCGCGATTGACTACGGCAAAGATTTGGAG 248817
||||| | | |||| | | | ||| ||| ||| |||| ||||| ||| || |
Sbjct 5688 GTCATGCGGCACAAGGAGGAGCTC---GACTCCGCCATTGTCTACGATCGAGACTTCAAC 5632
Query 248818 TACGATTTCTTTGCTTTCAAAACGCTGGAGAAATCGTATCTCCTCAAAATTGATGGCAAG 248877
||| | | ||||| ||||| || |||||| || || || || || |||||||||||
Sbjct 5631 TACCAATACTTTGGCTTCAAGACTCTGGAGCGGTCATACCTTCTGAAGCTTGATGGCAAG 5572
Query 248878 ATCGTGGAACGAATTCAGCACATGTTGATGCGAGTGGCTGTCGGGATTCACAAGGATGAC 248937
|| || || || ||||||||| | ||||| ||| |||| || || || |||
Sbjct 5571 ATTGTTGAGCGGCCACAGCACATGATTATGCGGGTGTCTGTTGGCATCTGGGGAGACGAC 5512
Query 248938 ATAGAGAGCGTGCTCGAGACGTACACCGGAATGAGT-GAACGCTGGATGACACATGCCAC 248996
|| ||| | || || ||||| |||| | ||| | | | | | | || |||||| |
Sbjct 5511 ATTGAGCGTGTCCTGGAGACATACAACCTCATGTCTAGCAAG-TTCTTCACCCATGCCTC 5453
Query 248997 ACCGA-CGCTCTTCAACGCCGGTACCGTCAACAATCAGCTGAGCTCGTGCTTTCTTCTTG 249055
|| | | || ||||||||||||||| | |||||| ||| ||||| | | |
Sbjct 5452 CCCCACCCCTGTTCAACGCCGGTACCCCGCAGGCCCAGCTGTCCTCATGCTTCTTGGTCG 5393
Query 249056 CCATGCAAGACGACTCTGTCGACGGCATTTATGACACGCTTAA-ACAGACGGCGAAGATT 249114
|||| | ||||| | |||| || || |||||||| || || ||| || | ||||
Sbjct 5392 ACATGAAGGACGATAGTATCGAGGGTATCTATGACACCCTGAAGACA-TGTGCCATGATT 5334
Query 249115 TCTAAATTCGCGGGCGGAATCGGTCTCTCCGTCTCCAACATCCGAGCGAAGGGTTCGTAC 249174
|| ||| | || || || ||||| | |||| | |||||| || | || || |||
Sbjct 5333 TCCAAAATGGCTGGTGGTATCGGCTTGAACGTCCACCGCATCCGTGCCACCGGCTCTTAC 5274
Query 249175 AT 249176
||
Sbjct 5273 AT 5272
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1073734000776640
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |