Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20pleuroti_20[genbank_20GCA_5F001721665.1_202016-09-08] 2,355 sequences; 38,137,656 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq1903 370 9e-98 seq535 226 3e-54 seq1667 120 3e-22 seq1790 93.3 4e-14 >seq1903 Length=20131 Score = 370 bits (410), Expect = 9e-98 Identities = 1209/1853 (65%), Gaps = 47/1853 (3%) Strand=Plus/Plus Query 22145 GTGCGAAGATAATACATGCCCGTCTTCAGACCCATCTTCCACGCGTAAAAATGTATCGAC 22204 ||||| || || |||||||| ||||| ||||| | |||||| | || || || Sbjct 3832 GTGCGCAGGTAGTACATGCCGGTCTTGAGACCAAGCTTCCAGCCAGTGAAGTGCATGCTG 3891 Query 22205 GTCAATTTT--CCATAACTCGGCAAGTCCATGTACACATTGAACGACTGACTCTGATCGA 22262 || ||| || |||| | || | ||||| | || | ||||| ||| || | Sbjct 3892 GT-AATCTTGCCCATTG-TGGGGTCCTTCATGTGGATGTTCAGGGACTGGGACTGGTCAA 3949 Query 22263 TAAACGCTCCTCGATCGGCGGCCATATTTATCAATGTA-CGCATCGACATTTCCCATACG 22321 | || || || ||||| || ||||| | | |||| | ||| || || ||||| ||| Sbjct 3950 TGAAAGCACCACGATCAGCCGCCATCTGGA-CAATTTGGCGCTGAGAAATCTCCCACACG 4008 Query 22322 GTCTTGTACAGTTGCCTGATCTCTAACGGTATCGATTCGATCCTCTGGACGGACCCGTTA 22381 |||||||||| | |||| ||| || || ||| |||| | ||| ||||| Sbjct 4009 GTCTTGTACAAGGCCTTGATATCTTCGGGGATGTTGGGGATGTTCTGAATGGAGCCGTTC 4068 Query 22382 TTGTGTATGATCAAATTTTTAATCGTATCGTTCCACAAACCGATGGCGGTCAAATCTTTG 22441 | ||||| || || || | |||| ||| | ||| || || || || ||| Sbjct 4069 TCAGCAATGATACGGTTCTTCATGGCATCGGACCAGAGGCCGGTGTCGACCAGGTCCTTG 4128 Query 22442 ACCAGATGACGGTTCACCACTTGAAACTCGCCGGACAAGACGCGGCGTTGGTAAATGTTG 22501 | || |||| || || || |||||||||| | ||| || || ||||| |||||| Sbjct 4129 AGAAGCCAGGGGTTGACAACCTGGAACTCGCCGGCAAGGACACGTCGCTGGTAGATGTTG 4188 Query 22502 GATGTGAACGGTTCGAAAGATTCATTGTTTCCCAGTATCTGAGCGGTCGAAGCGGTCGGC 22561 || ||| | || ||||| | || ||||| ||||| ||||| | ||| || || ||| Sbjct 4189 GAAGTGTAGGGCTCGAAGCACTCGTTGTTGCCCAGAATCTGGGAGGTACTGGCAGTGGGC 4248 Query 22562 ATCGGCGCCAACAGTAGCGAGTTTCTCAAGCCGTGCT--TTGAAATTTTACTC-TTGAGC 22618 || || || | || | ||| | || ||||||| |||| | | ||| |||||| Sbjct 4249 ATGGGGGCGACGAGCAAGCTGTTGCGCACACCGTGCTCCTTGA---TCTGCTCCTTGAGC 4305 Query 22619 ATCGACCAGTCCCACAGATCGGACGGCGTCACATTGTCCCACATATCGTATTGCAACACG 22678 ||| ||||||| || || ||| | |||| ||||||| ||| |||| | | | Sbjct 4306 GAGTCCCACTCCCACAAGTCAGAAGGCTTGACAT---CCCACATGTCGAATTGGAGGATG 4362 Query 22679 CCG-CGACTCGCCGG-GCTGCCTTCGTACGTTTCGTACGGACCATATATCGCGGCAAGTT 22736 || || | || || | | |||| | ||| |||||| ||||| | | | ||||| | Sbjct 4363 CCCTCGGAT-GCAGGTGATCCCTT-GAACGATTCGTAGGGACCCTCCACCTTGGCAATCT 4420 Query 22737 CGCAGCTCGCCTCCAACGCGCCGTAATATATAGTCTCGAAGATTTTCTTGTTCAATTCG- 22795 | | ||||||| || ||| || || ||||| ||||| | |||||||| ||| Sbjct 4421 CCATGGAAGCCTCCAGGGCCGCGTGGTAGATTGTCTCAAAGATCTGCTTGTTCAGCTCGC 4480 Query 22796 --GCGGCGGCGACGCTTTCGTACGGCATACGCATCATCACGAACGCGTCCGCCATACCCT 22853 || ||| || || | | ||||| |||| | ||| ||||| || | ||||| Sbjct 4481 GAGCCTCGG-GAGACT--CAAAGGGCATGCGCAGGGCAAGGAAAGCGTCGGCAAGACCCT 4537 Query 22854 GAACGCCTATACCGATCGGTCGGTTTTTCAGATTCGACACTTTTGC----CTCGGGCAAA 22909 | || || | ||| || ||||||| || || || |||| ||| | | | Sbjct 4538 GGACACCAACACCAATAGGTCGGTGGCGCATGTTG----CTGTTGCGAGCCTCCTGGACA 4593 Query 22910 GGATACCAATTCGAATCGATTGTTCTGTTCAAGTTTCTGGTCACAATTTTCGTTATNNNN 22969 ||||| | || ||| || | |||| | ||| | | || | || || | Sbjct 4594 GGATAGTAGTTGACATCAATGATCTTGTTAAGGTTGCGGACAACGACCTTGGTGACTTCA 4653 Query 22970 NNNNNNNNNTCAAAGTCGTAAACGCC--CGATTGTA--CAAC--AAACTTGTTGACGGCG 23023 | ||||||||| ||| || ||||| | || || | | || ||| Sbjct 4654 TGAAGCTTCTTAAAGTCGTAGCAGCCTTCG-TTGTAGTCGACGTAAGCAGG--GAGGGCC 4710 Query 23024 ATCGAGGCAAGATTGCATACGGCCACCTCGTCTTTGGACGTGTACTCTACAATTTCGGTA 23083 | ||||| | ||||| ||||| ||||| ||| || |||||| | || ||||| Sbjct 4711 AAAGAGGCCAAGTTGCACACGGCAACCTCATCTGGGGCACAGTACTCGATGATCTCGGTG 4770 Query 23084 CATAGATTGCTACACTTTATCGTGCCCAAATTGCTCTGGTTGCTTTTTCGATTGCACGAA 23143 || || ||| | || || |||| || | |||||||| || || ||||| | Sbjct 4771 CAGAGGTTGGAGCTGCGGATGGTTCCCAGGTTCTTTTGGTTGCTCTTGCGGTTGCAGTGA 4830 Query 23144 TCCTTGTAGAGCATGTACGGCGTGCCCGTCTCGACCTGCGACTCGATGATCGCTCGCCAC 23203 ||||||||||||||| | || | || |||||| ||| | || | ||| | |||| Sbjct 4831 TCCTTGTAGAGCATGAAGGGGTTACCAGTCTCGGTCTGGGCTTCCAGGATGGAATACCAC 4890 Query 23204 ATAGTCTGAGCGTGAACACGTCGCACGT--ACCTGCCTTCTTCCTCGTACTTTTGGTACA 23261 | |||||||| | | ||| || || | ||| |||| |||||||| | |||| Sbjct 4891 AGCTTCTGAGCGCGGATG-GTCTTGCGACCACGTCCCTCCTTC-TCGTACTTCTCATACA 4948 Query 23262 ACGCGTCAAATTCGGCACCGTAACAGTCGGCCAGGCCGGGCGATTGCATCGGACACATGA 23321 | || || || || | || || ||||| || ||||| || ||| | || ||||||| Sbjct 4949 AGGCCTCGAACTCCTCGCCATAGCAGTCAGCAAGGCCAGGACATTCGTTGGGGCACATGA 5008 Query 23322 GACTCCACATTGAGTCATTTTCAACGCGTCTCATAAAAAGATCCGGTATCCATAGAGCGT 23381 | |||| ||| || ||||| || |||| || || || || ||||| ||||| Sbjct 5009 GCGTCCAGTCCAAGTTCTTCTCAACACGCTTCATGAAGAGGTCGGGAATCCAGAGAGCAA 5068 Query 23382 AGAACAGTTCGCGGGCGCGCACCTCCTCTTTGCCGGTGTTCTTTTTCAAATCCAAAAAGT 23441 ||||| ||||| ||||| ||||| || |||||| |||||| | ||| | || | Sbjct 5069 GGAACAAGTCGCGAGCGCGGACCTCTTCCTTGCCGTGGTTCTTGCGGAGATCAAGGAACT 5128 Query 23442 CCAACACGTCCGCATGCCACGGCTCGAGGTAAACGGCAAACGCGCCCGGTCTCTTATTGC 23501 | || ||||| || ||||| ||||||||||| | |||||| || || || | ||| || | Sbjct 5129 CAAAGACGTCGGCGTGCCAGGGCTCGAGGTAGATGGCAAAAGCACCAGGACGCTTGTTAC 5188 Query 23502 CGCCCTGATCGACGTAACGGGCCGTGTTGTTGTACACTCTTAGCATCGGCACGAGACCGT 23561 | ||||||||||| || | ||| ||||||||| |||||| ||||| || | | ||||| Sbjct 5189 CACCCTGATCGACATATCTGGCAGTGTTGTTGAACACTCGAAGCATGGGAATAATACCGT 5248 Query 23562 TGGACGCGCCGCCTACGCCCGCCACACTCGAACCTTTTGCTCGAACGTTGTGAACGTGGA 23621 |||| | ||| ||| || | || || | || || | | ||| |||| | Sbjct 5249 TGGAGGTACCGTTGGTGCCAGCAATGTAAGAGCCGGTGGCACGGATGCGGTGGACGTTCA 5308 Query 23622 AACCTATGCCTCCGCCCGATTTCGATATCATCGCGCATTGTTTCAGAGTGTCGTAGATGC 23681 | || || || || || ||| || ||||| || ||| ||||| ||||| ||||| | Sbjct 5309 AGCCGATACCACCAGCCATTTTGGAAATCATGGCACATGTCTTCAGGGTGTCATAGATAC 5368 Query 23682 CCTCGATGCTGTCCTCTTTGGTCGCGACCAAGAAACACGAAGACATTTGCGCTTTGGGCG 23741 ||||||| || || || || | |||||||||| || || |||| || || | || | Sbjct 5369 CCTCGATACTATCGTCCTTCATGTCGACCAAGAAGCATGAGGACAGCTGGGCCTGCGGGG 5428 Query 23742 TAGCGGCCGAGAACA-GTGTCGGGCTGGCGTGCGTAAAGTATCCATTCGACATTAGATTG 23800 || |||| ||||| | || ||| ||| || || ||| | | ||||| || ||| Sbjct 5429 TACCGGCGTTGAACAGGGGTGGGGGAGGCATGGGTGAAGAACTTGCTAGACATGAGGTTG 5488 Query 23801 TACGTGTCGATGGCGGCATCAATGTCCTCTCCGTGTATACCGATGGCGACGCGCATCATC 23860 || || || | | | |||||||| ||||| || || | | || ||||| ||| Sbjct 5489 TATGTCTCCAGGACACGCTCAATGTCGTCTCCCCAGATGCCAACAGACACCCGCATAATC 5548 Query 23861 ATGTATTGAGGTCTCTCGACCGTGACGCCGTTAATTTTGAACAGATATGAACGTTGCATC 23920 |||| || || | ||| || | ||| | || || | || ||||| || | || Sbjct 5549 ATGTGCTGTGGCCGCTCAACAATCTTGCCATCAAGCTTCAGAAGGTATGACCGCTCCAGA 5608 Query 23921 GTTTTAAATCCAAAATAGTCATAGTTAAAGTCACGATCGTGCACTATGGCCGA 23973 || || || ||||| || | ||||| ||||| ||||||| || ||||| || Sbjct 5609 GTCTTGAAGCCAAAGTATTGGTAGTTGAAGTCTCGATCGTAGACAATGGCGGA 5661 >seq535 Length=62126 Score = 226 bits (250), Expect = 3e-54 Identities = 560/839 (67%), Gaps = 27/839 (3%) Strand=Plus/Minus Query 57570 ATTTGGAACATGTACAAAAAGGCAGAAGCATCGTTTTGGACCGTCGAAGAAGTAGACCTG 57629 |||||| | |||||||||||||| || || || || ||||||| |||||| | || ||| Sbjct 15647 ATTTGGCAAATGTACAAAAAGGCCGAGGCCTCCTTCTGGACCGCCGAAGAGATTGATCTG 15588 Query 57630 TCTAAGGATCTGAGCGATTGGGATTCCCTC---AAAGAATCTGA-GAGAAAT--TTTATT 57683 || ||||||||| ||| ||| | || | || || ||| ||||| | || || Sbjct 15587 TCCAAGGATCTGCACGACTGGAACAACCGCCTGAACGA---TGACGAGAAGTACTTCATC 15531 Query 57684 AAACACGTGTTGGCGTTTTTCGCCGCATCCGATGGTATTGTTAACGAGAATTTGGTCGAA 57743 ||| | |||| || || ||||| || ||||| ||||| |||||||| ||||||| Sbjct 15530 TCTCACATCCTGGCCTTCTTTGCCGCCTCTGATGGCATTGTCAACGAGAACCTGGTCGAG 15471 Query 57744 AGATTTTCACAAGAAGTGCAAGTGACGGAGGCGAGATGCTTTTACGGATTTCAAGTGGCC 57803 | || || || || | | ||||| ||||||| ||||| || || | Sbjct 15470 CGCTTCAGCGGCGAGGTCCAGATCCCCGAGGCTCGATGCTTCTACGGCTTCCAGATCATG 15411 Query 57804 ATTGAAAACGTGCATTCAGAAATGTATTCGCTACTCATCGATACGTACGTGAAGGACAAC 57863 || || ||| | || || || | || || || |||||||| || ||| | ||||| ||| Sbjct 15410 ATGGAGAACATCCACTCCGAGACCTACTCCCTGCTCATCGACACCTACATCAAGGAGAAC 15351 Query 57864 GACGAGAAACGTAGA---CTGTTCAACGCGATCGAAACAATGCCC-GCGATCGCCAAGAA 57919 | || || || || |||||||| || || || || || || |||| || || Sbjct 15350 AGCCAG---CGCAGCTACCTCTTCAACGCCATTGAGACCATTCCTTGCATTCGCAAA-AA 15295 Query 57920 GGCAGAGTGGTCAATCAAATGGATAAAAAGCGCCACGGCCACGTTCGCCGAGAGGCTAAT 57979 ||| || ||| | ||||| ||||| | | | | | || ||| || | || | Sbjct 15294 GGCCGACTGGGCCATCAAGTGGATTCAGGACAAGAACTCTTCCTTTGCCCAGCGCCTGGT 15235 Query 57980 CGCGTTCGCCGCCGTCGAAGGTATATTCTTTTCGGGCAGCTTTGCGGCAATATTTTGGAT 58039 || || ||||||||||| || || ||||| || |||||| | || || ||| | Sbjct 15234 TGCCTTTGCCGCCGTCGAGGGCATCTTCTTCAGCGGTGCCTTTGCCTCCATCTTCTGGGT 15175 Query 58040 GAAGAAACGCGGCCTGATGCCCGGCCTGACGTTTAGCAACGAGTTGATATCGCGCGACGA 58099 ||||| || || || ||||| || ||||| ||| ||||||| | || || || || || Sbjct 15174 CAAGAAGCGAGGTCTCATGCCTGGTCTGACCTTTTCCAACGAGCTCATCTCTCGTGATGA 15115 Query 58100 GGGTCTCCATACTGATTTTGCGTGCCTAATGTACTCTCACATTGTCAATAAAC---CGAC 58156 |||||| || ||||| ||||| ||||| || |||||||| |||| || | | | Sbjct 15114 GGGTCTGCACACTGACTTTGCCTGCCTGCTGCACTCTCAC---CTCAAGAACCGTGCCAG 15058 Query 58157 GCGGGATCGCATCTTGGACATTATCACCGAGGCGGTCGCGATCGAAAATGAGTTTGTCAC 58216 ||| ||| ||||| |||||||| || ||| || || | ||||| | || Sbjct 15057 CAAGGAGATGATCCGTGACATCATCACCGACGCTGTCCGAATTGAGCAGGAGTTCTTGAC 14998 Query 58217 CGAAGCCCTACCGGTGGCCATGCTCGGTATGAACAATGATTTGATGTCAAAGTACATTGA 58276 ||| || || || ||| |||| || |||||| ||||| |||||||||| Sbjct 14997 CGAGGCTCTCCCCTGCGCCTTGCTTGGCATGAACTCCAGCCTGATGAAGCAGTACATTGA 14938 Query 58277 GTTTGTTGCCGACAGACTTTTGCTCGAACT--GATTGGAGAGCGTCATTACAACACGAAA 58334 ||||||||||||| | || || ||| || | || | ||| ||||| | Sbjct 14937 GTTTGTTGCCGACCGCCTGCTGGTCGCTCTCGGCAACGAAAAGGTC--TACAAGTCTTCC 14880 Query 58335 AATCCGTTTGATTTTATGAATCTGATCTCGCTCGAGGGCAAGACAAACTTTTTCGAAAA 58393 || || ||||| || ||| | || || |||| |||||||| ||||| ||||| || Sbjct 14879 AACCCCTTTGACTTCATGGAGAACATTTCTCTCGGTGGCAAGACCAACTTCTTCGAGAA 14821 >seq1667 Length=31153 Score = 120 bits (132), Expect = 3e-22 Identities = 141/191 (74%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| |||||||| |||||||| |||||||| || |||||| |||| || ||| | ||| Sbjct 23241 ATGCAGATTTTCGTCAAGACTCTCACAGGCAAGACAATCACCCTCGAGGTGGAATCTTCC 23300 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| |||| | ||||| | || ||||||||| ||| | || || |||||| Sbjct 23301 GACACCATCGACAACGTCAAGTCCAAGATTCAGGACAAGGAGGGCATTCCTCCTGACCAG 23360 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 ||||| | || || ||||| || ||| |||||||| | || ||||||| || ||| Sbjct 23361 CAGCGCTTGATCTTTGCTGGTAAGCAGCTGGAAGACGGTCGCACCTTGAGCGACTACAAC 23420 Query 31373 ATTCAAAAAGA 31383 || || || || Sbjct 23421 ATCCAGAAGGA 23431 Score = 105 bits (116), Expect = 6e-18 Identities = 151/213 (71%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251 ||||||||| ||||| ||||| || || ||||| || |||||| |||| || || |||| Sbjct 22485 CATGCAAATCTTCGTCAAGACCCTCACCGGCAAGACCATCACCCTCGAGGTGGAGTCGTC 22544 Query 31252 CGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 ||| | |||| | ||||| | || ||||||||| ||| | || || ||||| Sbjct 22545 CGATACCATCGACAACGTCAAGTCTAAGATCCAGGACAAGGAGGGCATTCCTCCTGACCA 22604 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371 ||||||||| || || |||||||| || | || || ||| || ||| || || Sbjct 22605 GCAGCGTCTGATTTTTGCTGGCAAGCAACTCGAGGATGGCCGAACTCTGTCCGACTACAA 22664 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 ||| || || || || || || || ||||| || Sbjct 22665 CATCCAGAAGGAGTCTACCCTCCACCTGGTTCT 22697 Score = 105 bits (116), Expect = 6e-18 Identities = 163/230 (71%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || ||||| ||||| |||| ||||| || ||||| | || ||||| | || Sbjct 23013 ATGCAGATCTTCGTCAAGACGTTGACCGGCAAGACCATCACATTGGAGGTTGAGTCATCA 23072 Query 31253 GACAGTGTCGAAACGGTCAAA-CAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 |||| |||| | ||||| || ||| | ||||||||| || | || || || || Sbjct 23073 GACACCATCGACAATGTCAAGTCAAAGATTCA-GGACAAGGAGGGTATCCCCCCGGATCA 23131 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371 ||||||||| || || ||||| || ||| | || ||| | ||| ||||||| || || Sbjct 23132 GCAGCGTCTCATCTTTGCTGGTAAGCAGCTCGAGGACGGTCGCACTTTGAGCGACTACAA 23191 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421 ||||||||| || || ||||| || || || | ||| | || |||| Sbjct 23192 CATTCAAAAGGAGAGCACACTTCACCTTGTCCTCCGTCTGCGTGGTGGTA 23241 >seq1790 Length=95376 Score = 93.3 bits (102), Expect = 4e-14 Identities = 159/231 (69%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 31190 AACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCG 31249 || ||||| |||||||| ||||| || || || || ||||||||| | || || || | Sbjct 27897 AAGATGCAGATTTTCGTCAAGACCCTCACGGGGAAGACGATCACCCTTGAGGTGGAGTCT 27838 Query 31250 TCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGAC 31309 ||||||| |||| | ||||| | || ||||||||| ||| | || || ||| Sbjct 27837 TCCGACACCATCGACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGCATTCCCCCGGAC 27778 Query 31310 CAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTAT 31369 |||||||| | || |||||||| || ||| |||| || || | ||| || Sbjct 27777 CAGCAGCGATTGATCTTCGCTGGTAAGCAGCTGGAGGATGGCCGAACCCTCTCCGACTAC 27718 Query 31370 AACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGT 31420 ||||| || || || || || || || ||||| || | ||| | || ||| Sbjct 27717 AACATCCAGAAGGAGTCTACCCTCCACCTGGTCCTGCGCCTGCGTGGTGGT 27667 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445753277751600