Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20pleuroti_20[genbank_20GCA_5F001721665.1_202016-09-08] 2,355 sequences; 38,137,656 total letters Query= NC_003225.3 Length=309286 Score E Sequences producing significant alignments: (Bits) Value seq535 152 1e-31 seq1903 98.7 2e-15 >seq535 Length=62126 Score = 152 bits (168), Expect = 1e-31 Identities = 300/440 (68%), Gaps = 9/440 (2%) Strand=Plus/Minus Query 101918 GTTGCCTTTGCTGCAGTTGAAGGAATCTTCTTTAGTGGTGCATTCGCATCCATTTTCTGG 101977 ||||||||||| || || || || |||||||| || ||||| || || ||||| |||||| Sbjct 15236 GTTGCCTTTGCCGCCGTCGAGGGCATCTTCTTCAGCGGTGCCTTTGCCTCCATCTTCTGG 15177 Query 101978 ATCAAGAACAGGGGTATTTTGCCTGGTCTCACCTCCTCCAATGAGTTCATTTCTAGGGAC 102037 ||||||| | ||| | |||||||||| |||| ||||| ||| |||| ||| | || Sbjct 15176 GTCAAGAAGCGAGGTCTCATGCCTGGTCTGACCTTTTCCAACGAGCTCATCTCTCGTGAT 15117 Query 102038 GAAGGTCTTCATCGCGACTTTGCATGCATGCTGTTGAAAAAGGGTTTTGTTGATACC--- 102094 || ||||| || |||||||| ||| ||||| | | || ||| Sbjct 15116 GAGGGTCTGCACACTGACTTTGCCTGCCTGCTG----CACTCTCACCTCAAGA-ACCGTG 15062 Query 102095 CCATCAAGAGAAAGGATTCTTGAAATTGTCACTGAAGCCGTCCGAATTGAACAAGAATTT 102154 ||| |||| || | ||| | ||| || |||| || || ||||||||||| || || || Sbjct 15061 CCAGCAAG-GAGATGATCCGTGACATCATCACCGACGCTGTCCGAATTGAGCAGGAGTTC 15003 Query 102155 CTCACAGTTTCCCTGCCTGTTAAATTAGTGGGAATGAACTGCAAGTTGATGAGCCAGTAC 102214 | || | | || || || | || ||||||| || |||||| |||||| Sbjct 15002 TTGACCGAGGCTCTCCCCTGCGCCTTGCTTGGCATGAACTCCAGCCTGATGAAGCAGTAC 14943 Query 102215 ATTGAATTTGTGGCAGATAAACTATTGGTTGAAATGGGACTAGAAAAGCACTATAATGTT 102274 ||||| ||||| || || || |||| | | || |||||| ||| || | Sbjct 14942 ATTGAGTTTGTTGCCGACCGCCTGCTGGTCGCTCTCGGCAACGAAAAGGTCTACAAGTCT 14883 Query 102275 ACCAACCCCTTCCCATTCATGGACAATATTTCCCTCGAGAATAAGACCAACTTTTTTGAA 102334 |||||||||| |||||||| || ||||| |||| ||||||||||| || || Sbjct 14882 TCCAACCCCTTTGACTTCATGGAGAACATTTCTCTCGGTGGCAAGACCAACTTCTTCGAG 14823 Query 102335 AAGAGAGTCGCCGAGTATCA 102354 ||| | |||||||| || || Sbjct 14822 AAGCGCGTCGCCGACTACCA 14803 >seq1903 Length=20131 Score = 98.7 bits (108), Expect = 2e-15 Identities = 180/260 (69%), Gaps = 3/260 (1%) Strand=Plus/Plus Query 94785 GCCGAGTCCTCCAGCAGTCTTGGAGATGATTGCCGCCTCCTTAAGAGTATCATAAATACC 94844 ||||| || ||||| | ||||| || || || ||| || || ||||| ||||| Sbjct 5310 GCCGATACCACCAGCCATTTTGGAAATCATGGCACATGTCTTCAGGGTGTCATAGATACC 5369 Query 94845 CTCAATGCTATCATCTTGAAGGCCCAGAAGGAAGCACGAGGAAAGTTGGGG-TGTGACTG 94903 ||| || ||||| || | | | | | | |||||| ||||| || |||| || | | Sbjct 5370 CTCGATACTATCGTCCTTCATGTCGACCAAGAAGCATGAGGACAGCTGGGCCTGCGGG-G 5428 Query 94904 TTCCACAATTAAACAGTG-TGGGGGAAGCATGGGTAAAATAGTGCCTCGACATGAGATCA 94962 | || || ||||| | ||||||| |||||||| || | | || |||||||| | Sbjct 5429 TACCGGCGTTGAACAGGGGTGGGGGAGGCATGGGTGAAGAACTTGCTAGACATGAGGTTG 5488 Query 94963 TATGTTTCAATGACAGATTTGATGTCTGATCCGTGAATGCCGACAGCCACACGCATAATC 95022 ||||| || | |||| | ||||| ||| ||||| |||| ||| ||||||||| Sbjct 5489 TATGTCTCCAGGACACGCTCAATGTCGTCTCCCCAGATGCCAACAGACACCCGCATAATC 5548 Query 95023 ATGTCCTGAGGGCGCTCAAC 95042 |||| ||| || |||||||| Sbjct 5549 ATGTGCTGTGGCCGCTCAAC 5568 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 989554140849025