Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichoderma_20pleuroti_20[genbank_20GCA_5F001721665.1_202016-09-08]
2,355 sequences; 38,137,656 total letters
Query= NC_003225.3
Length=309286
Score E
Sequences producing significant alignments: (Bits) Value
seq535 152 1e-31
seq1903 98.7 2e-15
>seq535
Length=62126
Score = 152 bits (168), Expect = 1e-31
Identities = 300/440 (68%), Gaps = 9/440 (2%)
Strand=Plus/Minus
Query 101918 GTTGCCTTTGCTGCAGTTGAAGGAATCTTCTTTAGTGGTGCATTCGCATCCATTTTCTGG 101977
||||||||||| || || || || |||||||| || ||||| || || ||||| ||||||
Sbjct 15236 GTTGCCTTTGCCGCCGTCGAGGGCATCTTCTTCAGCGGTGCCTTTGCCTCCATCTTCTGG 15177
Query 101978 ATCAAGAACAGGGGTATTTTGCCTGGTCTCACCTCCTCCAATGAGTTCATTTCTAGGGAC 102037
||||||| | ||| | |||||||||| |||| ||||| ||| |||| ||| | ||
Sbjct 15176 GTCAAGAAGCGAGGTCTCATGCCTGGTCTGACCTTTTCCAACGAGCTCATCTCTCGTGAT 15117
Query 102038 GAAGGTCTTCATCGCGACTTTGCATGCATGCTGTTGAAAAAGGGTTTTGTTGATACC--- 102094
|| ||||| || |||||||| ||| ||||| | | || |||
Sbjct 15116 GAGGGTCTGCACACTGACTTTGCCTGCCTGCTG----CACTCTCACCTCAAGA-ACCGTG 15062
Query 102095 CCATCAAGAGAAAGGATTCTTGAAATTGTCACTGAAGCCGTCCGAATTGAACAAGAATTT 102154
||| |||| || | ||| | ||| || |||| || || ||||||||||| || || ||
Sbjct 15061 CCAGCAAG-GAGATGATCCGTGACATCATCACCGACGCTGTCCGAATTGAGCAGGAGTTC 15003
Query 102155 CTCACAGTTTCCCTGCCTGTTAAATTAGTGGGAATGAACTGCAAGTTGATGAGCCAGTAC 102214
| || | | || || || | || ||||||| || |||||| ||||||
Sbjct 15002 TTGACCGAGGCTCTCCCCTGCGCCTTGCTTGGCATGAACTCCAGCCTGATGAAGCAGTAC 14943
Query 102215 ATTGAATTTGTGGCAGATAAACTATTGGTTGAAATGGGACTAGAAAAGCACTATAATGTT 102274
||||| ||||| || || || |||| | | || |||||| ||| || |
Sbjct 14942 ATTGAGTTTGTTGCCGACCGCCTGCTGGTCGCTCTCGGCAACGAAAAGGTCTACAAGTCT 14883
Query 102275 ACCAACCCCTTCCCATTCATGGACAATATTTCCCTCGAGAATAAGACCAACTTTTTTGAA 102334
|||||||||| |||||||| || ||||| |||| ||||||||||| || ||
Sbjct 14882 TCCAACCCCTTTGACTTCATGGAGAACATTTCTCTCGGTGGCAAGACCAACTTCTTCGAG 14823
Query 102335 AAGAGAGTCGCCGAGTATCA 102354
||| | |||||||| || ||
Sbjct 14822 AAGCGCGTCGCCGACTACCA 14803
>seq1903
Length=20131
Score = 98.7 bits (108), Expect = 2e-15
Identities = 180/260 (69%), Gaps = 3/260 (1%)
Strand=Plus/Plus
Query 94785 GCCGAGTCCTCCAGCAGTCTTGGAGATGATTGCCGCCTCCTTAAGAGTATCATAAATACC 94844
||||| || ||||| | ||||| || || || ||| || || ||||| |||||
Sbjct 5310 GCCGATACCACCAGCCATTTTGGAAATCATGGCACATGTCTTCAGGGTGTCATAGATACC 5369
Query 94845 CTCAATGCTATCATCTTGAAGGCCCAGAAGGAAGCACGAGGAAAGTTGGGG-TGTGACTG 94903
||| || ||||| || | | | | | | |||||| ||||| || |||| || | |
Sbjct 5370 CTCGATACTATCGTCCTTCATGTCGACCAAGAAGCATGAGGACAGCTGGGCCTGCGGG-G 5428
Query 94904 TTCCACAATTAAACAGTG-TGGGGGAAGCATGGGTAAAATAGTGCCTCGACATGAGATCA 94962
| || || ||||| | ||||||| |||||||| || | | || |||||||| |
Sbjct 5429 TACCGGCGTTGAACAGGGGTGGGGGAGGCATGGGTGAAGAACTTGCTAGACATGAGGTTG 5488
Query 94963 TATGTTTCAATGACAGATTTGATGTCTGATCCGTGAATGCCGACAGCCACACGCATAATC 95022
||||| || | |||| | ||||| ||| ||||| |||| ||| |||||||||
Sbjct 5489 TATGTCTCCAGGACACGCTCAATGTCGTCTCCCCAGATGCCAACAGACACCCGCATAATC 5548
Query 95023 ATGTCCTGAGGGCGCTCAAC 95042
|||| ||| || ||||||||
Sbjct 5549 ATGTGCTGTGGCCGCTCAAC 5568
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 989554140849025
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |