Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichoderma_20pleuroti_20[genbank_20GCA_5F001721665.1_202016-09-08]
2,355 sequences; 38,137,656 total letters
Query= NC_003310.1
Length=196858
Score E
Sequences producing significant alignments: (Bits) Value
seq535 141 1e-28
seq1903 120 4e-22
>seq535
Length=62126
Score = 141 bits (156), Expect = 1e-28
Identities = 360/544 (66%), Gaps = 8/544 (1%)
Strand=Plus/Plus
Query 33596 GTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGTCCGGGCATTAGGCC 33655
|||||||||||| || | | || | ||||| ||||| || || || ||||| || ||
Sbjct 15105 GTGCAGACCCTCATCACGAGAGATGAGCTCGTTGGAAAAGGTCAGACCAGGCATGAGACC 15164
Query 33656 ACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAGATTCCTTCTACTGC 33715
||||| || | ||| || ||||| || || | ||| |||||||| || || || ||
Sbjct 15165 TCGCTTCTTGACCCAGAAGATGGAGGCAAAGGCACCGCTGAAGAAGATGCCCTCGACGGC 15224
Query 33716 AGCAAAGGCAATAAGTCTCTCTCCA---TAACCGGCGCTGTCATGTATCCACTTTTGAGC 33772
|||||||||| || | || || || | |||| || |||||||| ||
Sbjct 15225 GGCAAAGGCAACCAGGCGCTGGGCAAAGGAAGAGTTCTTGTCCTGAATCCACTTGATGGC 15284
Query 33773 CCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGATAGttttt 33832
||| |||||||| || | ||||| || || || ||||| || ||||| ||| |
Sbjct 15285 CCAGTCGGCCTTTTTGCGAATGCAAGGAATGGTCTCAATGGCGTTGAAGAGGTAGCTGCG 15344
Query 33833 ttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAATGAATGTT 33892
| | | || || | || || ||||| | || || | || || || |||||
Sbjct 15345 CTGGCTGTTCTCCTTGATGTAGGTGTCGATGAGCAGGGAGTAGGTCTCGGAGTGGATGTT 15404
Query 33893 TTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGCACTTCTGTACA 33952
|| || ||||| || |||||||| |||| |||||||| ||||| || || |
Sbjct 15405 CTCCATCATGATCTGGAAGCCGTAGAAGCATCGAGCCTCGGGGATCTGGACCTCGCCGCT 15464
Query 33953 AAATCGTTCTGCTAAATTTTCATTCACTATTCCATCACTGGCTGCAAAAAACGCCAATAC 34012
|| || || | | || || || || || |||||| ||| ||||| || |||| |
Sbjct 15465 GAAGCGCTCGACCAGGTTCTCGTTGACAATGCCATCAGAGGCGGCAAAGAAGGCCAGGAT 15524
Query 34013 ATGTTTTATAAAATATTTTTCGTC-TGGTGTTA---GTTTATTCCAATCATTGATATCTT 34068
|| || || || || ||||| | || | | | || ||||| || | | ||| |
Sbjct 15525 GTGAGAGATGAAGTACTTCTCGTCATCGT-TCAGGCGGTTGTTCCAGTCGTGCAGATCCT 15583
Query 34069 TAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCC 34128
| || | ||| | ||||| | ||||| || || ||||| |||||||| ||||| | ||
Sbjct 15584 TGGACAGATCAATCTCTTCGGCGGTCCAGAAGGAGGCCTCGGCCTTTTTGTACATTTGCC 15643
Query 34129 AGAT 34132
| ||
Sbjct 15644 AAAT 15647
>seq1903
Length=20131
Score = 120 bits (132), Expect = 4e-22
Identities = 448/697 (64%), Gaps = 13/697 (2%)
Strand=Plus/Plus
Query 63221 AGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAA 63280
||||||||| | || ||||| | || ||| || || | || || || ||||| ||
Sbjct 4986 AGGACATTCGTTGGGGCACATGAGCGTCCAGTCCAAGTTCTTCTCAACACGCTTCATGAA 5045
Query 63281 GAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTTGTTCTATGTTCCTCGTTTCCTGT 63340
||| || |||||||| ||||| | || | || | | | || || || ||
Sbjct 5046 GAGGTCGGGAATCCAGAGAGCAAGGAACAAGTCGCGAGCGCGGACCTCTTCCTTGCCGTG 5105
Query 63341 ATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGC 63400
||||| ||||| |||||| | | | || | ||||| || || | ||| |||||
Sbjct 5106 GTTCTTGCGGAGATCAAGGAACTCAAAGACGTCGGCGTGCCAGGGCTCGAGGTAGATGGC 5165
Query 63401 CATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAAC 63460
| | | ||||| || ||||| || |||||||| | ||||| || ||||| || | ||
Sbjct 5166 AAAAGCACCAGGACGCTTGTTACCACCCTGATCGACATATCTGGCAGTGTTGTTGAACAC 5225
Query 63461 TCTCAACATTGGAATAATACCGTTTGATATACCATTGGTACCGGAGATATAGCCTCCACT 63520
|| | ||| |||||||||||||| || |||| ||||| || | || || || |
Sbjct 5226 TCGAAGCATGGGAATAATACCGTTGGAGGTACCGTTGGTGCCAGCAATGTAAGAGCCGGT 5285
Query 63521 GGCACGAAT--ATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCG 63578
|||||| || | || | || || || || || |||||||| || || | ||
Sbjct 5286 GGCACGGATGCGGTGGACGTTCA-AG-CCGATACCACCAGCCATTTTGGAAATCATGGCA 5343
Query 63579 CATCGTTTTAACGTGTCATAGATGCCTTCTATGCTATCATCGATCATGTTAAGTAGAAAA 63638
||| || | ||||||||||| || || || ||||| || |||||| | | ||
Sbjct 5344 CATGTCTTCAGGGTGTCATAGATACCCTCGATACTATCGTCCTTCATGTCGACCAAGAAG 5403
Query 63639 CAGCTAGACATTTGGTGACGAGTAGTTCCCGCATTAAATA-AGGTAGGAGAAGCGTGCGT 63697
|| |||| ||| | | || || || || || | ||| || || || || ||
Sbjct 5404 CATGAGGACAGCTGGGCCTGCGGGGTACCGGCGTTGAACAGGGGTGGGGGAGGCATGGGT 5463
Query 63698 AAACCATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATC----CCATT 63753
|| | || ||| | || ||||| ||||| | | || || || ||
Sbjct 5464 GAAGAACTTGCTAGACATGAGGTTGTATGTCTCCAGGACACGCTCAATGTCGTCTCCCCA 5523
Query 63754 GATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACAATTTTGTTGT 63813
|||| || || | || ||||| | ||||||||| || | |||||||| ||| |
Sbjct 5524 GATG----CCAACAGACACCCGCATAATCATGTGCTGTGGCCGCTCAACAATCTTGCCAT 5579
Query 63814 TTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGT 63873
| |||| | ||| || |||| ||| || || ||||| || | ||| ||||
Sbjct 5580 CAAGCTTCAGAAGGTATGACCGCTCCAGAGTCTTGAAGCCAAAGTATTGGTAGTTGAAGT 5639
Query 63874 CTCGTTCGTAAATAATAACCGAATTGAGCTTATCCTT 63910
|||| ||||| | ||| | || | ||||| |||||
Sbjct 5640 CTCGATCGTAGACAATGGCGGAGTCGAGCTCCTCCTT 5676
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 629799059744400
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