Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20pleuroti_20[genbank_20GCA_5F001721665.1_202016-09-08] 2,355 sequences; 38,137,656 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq1903 127 3e-24 seq535 118 1e-21 >seq1903 Length=20131 Score = 127 bits (140), Expect = 3e-24 Identities = 277/411 (67%), Gaps = 4/411 (1%) Strand=Plus/Plus Query 66012 CCAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATA 66071 ||||||||||| | || ||||| | || ||| || || | || || || ||||| Sbjct 4984 CCAGGACATTCGTTGGGGCACATGAGCGTCCAGTCCAAGTTCTTCTCAACACGCTTCATG 5043 Query 66072 AAGAGATCAGGAATCCAAAGAGCTATAAATAAATCTCTGGTTCTATGTTCCTCGTTTCCT 66131 ||||| || |||||||| ||||| | || || || | | | || || || || Sbjct 5044 AAGAGGTCGGGAATCCAGAGAGCAAGGAACAAGTCGCGAGCGCGGACCTCTTCCTTGCCG 5103 Query 66132 GTATTCTTTTTAAGATCGAGGAACGCCATAATATCATAATGCCACGGTTCCAAGTATATG 66191 ||||| ||||| |||||| | | | || ||||| || || | ||| ||| Sbjct 5104 TGGTTCTTGCGGAGATCAAGGAACTCAAAGACGTCGGCGTGCCAGGGCTCGAGGTAGATG 5163 Query 66192 GCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAA 66251 || | | | ||||| || ||||| || |||||||| | ||||| || ||||| || | Sbjct 5164 GCAAAAGCACCAGGACGCTTGTTACCACCCTGATCGACATATCTGGCAGTGTTGTTGAAC 5223 Query 66252 ACTCTCAACATTGGAATAATACCATTGGATGTACCATTGGTCCCGGAGATATAGCTTCCA 66311 |||| | ||| ||||||||||| ||||| ||||| ||||| || | || || || Sbjct 5224 ACTCGAAGCATGGGAATAATACCGTTGGAGGTACCGTTGGTGCCAGCAATGTAAGAGCCG 5283 Query 66312 CTTGCACGAAT--ATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATG 66369 | ||||| || | || | || || || || || |||||||| || || | | Sbjct 5284 GTGGCACGGATGCGGTGGACGTTCA-AG-CCGATACCACCAGCCATTTTGGAAATCATGG 5341 Query 66370 CGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGT 66420 | ||| || | || |||||||| ||||| |||||||| ||| |||||| Sbjct 5342 CACATGTCTTCAGGGTGTCATAGATACCCTCGATACTATCGTCCTTCATGT 5392 >seq535 Length=62126 Score = 118 bits (130), Expect = 1e-21 Identities = 355/544 (65%), Gaps = 8/544 (1%) Strand=Plus/Plus Query 36172 GTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCC 36231 ||| |||||||| || | | || | ||||||||||| || || || ||||| || || Sbjct 15105 GTGCAGACCCTCATCACGAGAGATGAGCTCGTTGGAAAAGGTCAGACCAGGCATGAGACC 15164 Query 36232 ACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGC 36291 ||||| || | ||| || ||||| ||||| | || ||||| || || || || || Sbjct 15165 TCGCTTCTTGACCCAGAAGATGGAGGCAAAGGCACCGCTGAAGAAGATGCCCTCGACGGC 15224 Query 36292 CGCAAAGGCAATAAGTCTCTCTCCA---TAACCGGCACTGTCATGTATCCACTTTTGAGC 36348 |||||||||| || | || || || | |||| || |||||||| || Sbjct 15225 GGCAAAGGCAACCAGGCGCTGGGCAAAGGAAGAGTTCTTGTCCTGAATCCACTTGATGGC 15284 Query 36349 CCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTAAAGAGATAGttttt 36408 ||| |||||||| || | ||||| || ||||| || || || ||||| ||| | Sbjct 15285 CCAGTCGGCCTTTTTGCGAATGCAAGGAATGGTCTCAATGGCGTTGAAGAGGTAGCTGCG 15344 Query 36409 ttCATTACTATCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAATGAATGTT 36468 | | | || || | || || || || | || || | || || || ||||| Sbjct 15345 CTGGCTGTTCTCCTTGATGTAGGTGTCGATGAGCAGGGAGTAGGTCTCGGAGTGGATGTT 15404 Query 36469 TTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCTGTACA 36528 || || || || || |||||||| |||| |||||||| ||||| || || | Sbjct 15405 CTCCATCATGATCTGGAAGCCGTAGAAGCATCGAGCCTCGGGGATCTGGACCTCGCCGCT 15464 Query 36529 AAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATAC 36588 || || || | | || || || || || || ||| ||| ||||| || |||| | Sbjct 15465 GAAGCGCTCGACCAGGTTCTCGTTGACAATGCCATCAGAGGCGGCAAAGAAGGCCAGGAT 15524 Query 36589 ATGTTTTATAAAATATTTTTCGT-TTGGTGTTA---GTTTATTCCAATCATTGATATCTT 36644 || || || || || |||| | || | | | || ||||| || | | ||| | Sbjct 15525 GTGAGAGATGAAGTACTTCTCGTCATCGT-TCAGGCGGTTGTTCCAGTCGTGCAGATCCT 15583 Query 36645 TAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCC 36704 | || | ||| | ||||| | ||||| || || ||||| |||||||| ||||| | || Sbjct 15584 TGGACAGATCAATCTCTTCGGCGGTCCAGAAGGAGGCCTCGGCCTTTTTGTACATTTGCC 15643 Query 36705 AGAT 36708 | || Sbjct 15644 AAAT 15647 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 658153425038200