Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichoderma_20pleuroti_20[genbank_20GCA_5F001721665.1_202016-09-08]
2,355 sequences; 38,137,656 total letters
Query= NC_003663.2
Length=224499
Score E
Sequences producing significant alignments: (Bits) Value
seq535 141 1e-28
seq1903 132 7e-26
>seq535
Length=62126
Score = 141 bits (156), Expect = 1e-28
Identities = 359/543 (66%), Gaps = 6/543 (1%)
Strand=Plus/Plus
Query 49974 GTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCC 50033
|||||||||||| || | | || || ||||||||||| || || || ||||| || ||
Sbjct 15105 GTGCAGACCCTCATCACGAGAGATGAGCTCGTTGGAAAAGGTCAGACCAGGCATGAGACC 15164
Query 50034 ACGCTTTTTAAGCCAAAATATGGACGCAAATGACCCAGAAAAGAAGATTCCTTCTACTGC 50093
||||| || | ||| || ||||| ||||| | || |||||||| || || || ||
Sbjct 15165 TCGCTTCTTGACCCAGAAGATGGAGGCAAAGGCACCGCTGAAGAAGATGCCCTCGACGGC 15224
Query 50094 GGCAAAGGCAACAAGTCTCTCTCCA---TAACTGGCGCTGTCATGTATCCACTTTTGAGC 50150
|||||||||||| || | || || || | |||| || |||||||| ||
Sbjct 15225 GGCAAAGGCAACCAGGCGCTGGGCAAAGGAAGAGTTCTTGTCCTGAATCCACTTGATGGC 15284
Query 50151 CCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGATAGttttt 50210
||| |||||||| || | ||||| || || || ||||| || ||||| ||| |
Sbjct 15285 CCAGTCGGCCTTTTTGCGAATGCAAGGAATGGTCTCAATGGCGTTGAAGAGGTAGCTGCG 15344
Query 50211 ttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAATGAATGTT 50270
| | | || || | || || ||||| | || || | || || || |||||
Sbjct 15345 CTGGCTGTTCTCCTTGATGTAGGTGTCGATGAGCAGGGAGTAGGTCTCGGAGTGGATGTT 15404
Query 50271 TTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGCACTTCTGTACA 50330
|| || ||||| || |||||||| |||| |||||||| ||||| || || |
Sbjct 15405 CTCCATCATGATCTGGAAGCCGTAGAAGCATCGAGCCTCGGGGATCTGGACCTCGCCGCT 15464
Query 50331 AAATCGTTCAGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATAC 50390
|| || || | | || || || || || || ||| ||| ||||| || |||| |
Sbjct 15465 GAAGCGCTCGACCAGGTTCTCGTTGACAATGCCATCAGAGGCGGCAAAGAAGGCCAGGAT 15524
Query 50391 ATGTTTTATAAAATGTTTTTCGT--TGGGT-GTTAGTTTATTCCAATCATTGATATCTTT 50447
|| || || | || |||| | | | | || ||||| || | | ||| ||
Sbjct 15525 GTGAGAGATGAAGTACTTCTCGTCATCGTTCAGGCGGTTGTTCCAGTCGTGCAGATCCTT 15584
Query 50448 AGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCCA 50507
|| | ||| | ||||| | ||||| || || ||||| |||||||| ||||| | |||
Sbjct 15585 GGACAGATCAATCTCTTCGGCGGTCCAGAAGGAGGCCTCGGCCTTTTTGTACATTTGCCA 15644
Query 50508 GAT 50510
||
Sbjct 15645 AAT 15647
>seq1903
Length=20131
Score = 132 bits (146), Expect = 7e-26
Identities = 452/699 (65%), Gaps = 13/699 (2%)
Strand=Plus/Plus
Query 79891 CCAGGACATTCGTCAGGACACATCAACGACCACTCTCCATCATCCTTTACTCGTTTCATA 79950
||||||||||||| || ||||| | || ||| || | | || || || |||||
Sbjct 4984 CCAGGACATTCGTTGGGGCACATGAGCGTCCAGTCCAAGTTCTTCTCAACACGCTTCATG 5043
Query 79951 AAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGCTCCTCGTTTCCT 80010
||||| || |||||||| ||||| | || | || | | | ||| || || ||
Sbjct 5044 AAGAGGTCGGGAATCCAGAGAGCAAGGAACAAGTCGCGAGCGCGGACCTCTTCCTTGCCG 5103
Query 80011 GTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATG 80070
||||| ||||| |||||| | | | || | ||||| || || | ||| |||
Sbjct 5104 TGGTTCTTGCGGAGATCAAGGAACTCAAAGACGTCGGCGTGCCAGGGCTCGAGGTAGATG 5163
Query 80071 GCCATAACTCCCGGTCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAA 80130
|| | | | || || || ||||| || |||||||| | ||||| || ||||| || |
Sbjct 5164 GCAAAAGCACCAGGACGCTTGTTACCACCCTGATCGACATATCTGGCAGTGTTGTTGAAC 5223
Query 80131 ACTCTCAACATTGGAATAATACCATTGGATGTACCATTGGTCCCGGAGATATAGCTTCCA 80190
|||| | ||| ||||||||||| ||||| ||||| ||||| || | || || ||
Sbjct 5224 ACTCGAAGCATGGGAATAATACCGTTGGAGGTACCGTTGGTGCCAGCAATGTAAGAGCCG 5283
Query 80191 CTGGCACGAAT--ATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATG 80248
||||||| || | || | || || || || || |||||||| || || | |
Sbjct 5284 GTGGCACGGATGCGGTGGACGTTCA-AG-CCGATACCACCAGCCATTTTGGAAATCATGG 5341
Query 80249 CGCATCGTTTTAACGTATCATAGATGCCCTCTATGCTATCATCAATCATGTTAAGTAGAA 80308
| ||| || | || |||||||| ||||| || ||||| || |||||| | | |
Sbjct 5342 CACATGTCTTCAGGGTGTCATAGATACCCTCGATACTATCGTCCTTCATGTCGACCAAGA 5401
Query 80309 AACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATA-AGGTAGGAGAAGCGTGC 80367
| || |||| ||| | || || || || || | ||| || || || ||
Sbjct 5402 AGCATGAGGACAGCTGGGCCTGCGGGGTACCGGCGTTGAACAGGGGTGGGGGAGGCATGG 5461
Query 80368 GTAAACCATTTTTCAGACAGTAGATTGTACGTCTCAATAGCTGATTCTATATC----CCA 80423
|| || | || ||||| || ||||| ||||| | | || || || ||
Sbjct 5462 GTGAAGAACTTGCTAGACATGAGGTTGTATGTCTCCAGGACACGCTCAATGTCGTCTCCC 5521
Query 80424 TTGATGAATTCCTACCGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTT 80483
|||| || || | || ||||| | ||||||||| || | ||||| ||||||
Sbjct 5522 CAGATG----CCAACAGACACCCGCATAATCATGTGCTGTGGCCGCTCAACAATCTTGCC 5577
Query 80484 ATTTATTTTCAACAAGTAAGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAA 80543
|| | |||| | ||| || |||| ||| || || ||||| || | ||| ||
Sbjct 5578 ATCAAGCTTCAGAAGGTATGACCGCTCCAGAGTCTTGAAGCCAAAGTATTGGTAGTTGAA 5637
Query 80544 GTCTCGTTCGTAAATAATAACCGAGTTGAGTTTATCCTT 80582
|||||| ||||| | ||| | |||| ||| | |||||
Sbjct 5638 GTCTCGATCGTAGACAATGGCGGAGTCGAGCTCCTCCTT 5676
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 718247655962200
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |