Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20pleuroti_20[genbank_20GCA_5F001721665.1_202016-09-08] 2,355 sequences; 38,137,656 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq535 141 1e-28 seq1903 132 7e-26 >seq535 Length=62126 Score = 141 bits (156), Expect = 1e-28 Identities = 359/543 (66%), Gaps = 6/543 (1%) Strand=Plus/Plus Query 49974 GTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCC 50033 |||||||||||| || | | || || ||||||||||| || || || ||||| || || Sbjct 15105 GTGCAGACCCTCATCACGAGAGATGAGCTCGTTGGAAAAGGTCAGACCAGGCATGAGACC 15164 Query 50034 ACGCTTTTTAAGCCAAAATATGGACGCAAATGACCCAGAAAAGAAGATTCCTTCTACTGC 50093 ||||| || | ||| || ||||| ||||| | || |||||||| || || || || Sbjct 15165 TCGCTTCTTGACCCAGAAGATGGAGGCAAAGGCACCGCTGAAGAAGATGCCCTCGACGGC 15224 Query 50094 GGCAAAGGCAACAAGTCTCTCTCCA---TAACTGGCGCTGTCATGTATCCACTTTTGAGC 50150 |||||||||||| || | || || || | |||| || |||||||| || Sbjct 15225 GGCAAAGGCAACCAGGCGCTGGGCAAAGGAAGAGTTCTTGTCCTGAATCCACTTGATGGC 15284 Query 50151 CCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGATAGttttt 50210 ||| |||||||| || | ||||| || || || ||||| || ||||| ||| | Sbjct 15285 CCAGTCGGCCTTTTTGCGAATGCAAGGAATGGTCTCAATGGCGTTGAAGAGGTAGCTGCG 15344 Query 50211 ttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAATGAATGTT 50270 | | | || || | || || ||||| | || || | || || || ||||| Sbjct 15345 CTGGCTGTTCTCCTTGATGTAGGTGTCGATGAGCAGGGAGTAGGTCTCGGAGTGGATGTT 15404 Query 50271 TTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGCACTTCTGTACA 50330 || || ||||| || |||||||| |||| |||||||| ||||| || || | Sbjct 15405 CTCCATCATGATCTGGAAGCCGTAGAAGCATCGAGCCTCGGGGATCTGGACCTCGCCGCT 15464 Query 50331 AAATCGTTCAGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATAC 50390 || || || | | || || || || || || ||| ||| ||||| || |||| | Sbjct 15465 GAAGCGCTCGACCAGGTTCTCGTTGACAATGCCATCAGAGGCGGCAAAGAAGGCCAGGAT 15524 Query 50391 ATGTTTTATAAAATGTTTTTCGT--TGGGT-GTTAGTTTATTCCAATCATTGATATCTTT 50447 || || || | || |||| | | | | || ||||| || | | ||| || Sbjct 15525 GTGAGAGATGAAGTACTTCTCGTCATCGTTCAGGCGGTTGTTCCAGTCGTGCAGATCCTT 15584 Query 50448 AGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCCA 50507 || | ||| | ||||| | ||||| || || ||||| |||||||| ||||| | ||| Sbjct 15585 GGACAGATCAATCTCTTCGGCGGTCCAGAAGGAGGCCTCGGCCTTTTTGTACATTTGCCA 15644 Query 50508 GAT 50510 || Sbjct 15645 AAT 15647 >seq1903 Length=20131 Score = 132 bits (146), Expect = 7e-26 Identities = 452/699 (65%), Gaps = 13/699 (2%) Strand=Plus/Plus Query 79891 CCAGGACATTCGTCAGGACACATCAACGACCACTCTCCATCATCCTTTACTCGTTTCATA 79950 ||||||||||||| || ||||| | || ||| || | | || || || ||||| Sbjct 4984 CCAGGACATTCGTTGGGGCACATGAGCGTCCAGTCCAAGTTCTTCTCAACACGCTTCATG 5043 Query 79951 AAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGCTCCTCGTTTCCT 80010 ||||| || |||||||| ||||| | || | || | | | ||| || || || Sbjct 5044 AAGAGGTCGGGAATCCAGAGAGCAAGGAACAAGTCGCGAGCGCGGACCTCTTCCTTGCCG 5103 Query 80011 GTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATG 80070 ||||| ||||| |||||| | | | || | ||||| || || | ||| ||| Sbjct 5104 TGGTTCTTGCGGAGATCAAGGAACTCAAAGACGTCGGCGTGCCAGGGCTCGAGGTAGATG 5163 Query 80071 GCCATAACTCCCGGTCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAA 80130 || | | | || || || ||||| || |||||||| | ||||| || ||||| || | Sbjct 5164 GCAAAAGCACCAGGACGCTTGTTACCACCCTGATCGACATATCTGGCAGTGTTGTTGAAC 5223 Query 80131 ACTCTCAACATTGGAATAATACCATTGGATGTACCATTGGTCCCGGAGATATAGCTTCCA 80190 |||| | ||| ||||||||||| ||||| ||||| ||||| || | || || || Sbjct 5224 ACTCGAAGCATGGGAATAATACCGTTGGAGGTACCGTTGGTGCCAGCAATGTAAGAGCCG 5283 Query 80191 CTGGCACGAAT--ATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATG 80248 ||||||| || | || | || || || || || |||||||| || || | | Sbjct 5284 GTGGCACGGATGCGGTGGACGTTCA-AG-CCGATACCACCAGCCATTTTGGAAATCATGG 5341 Query 80249 CGCATCGTTTTAACGTATCATAGATGCCCTCTATGCTATCATCAATCATGTTAAGTAGAA 80308 | ||| || | || |||||||| ||||| || ||||| || |||||| | | | Sbjct 5342 CACATGTCTTCAGGGTGTCATAGATACCCTCGATACTATCGTCCTTCATGTCGACCAAGA 5401 Query 80309 AACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATA-AGGTAGGAGAAGCGTGC 80367 | || |||| ||| | || || || || || | ||| || || || || Sbjct 5402 AGCATGAGGACAGCTGGGCCTGCGGGGTACCGGCGTTGAACAGGGGTGGGGGAGGCATGG 5461 Query 80368 GTAAACCATTTTTCAGACAGTAGATTGTACGTCTCAATAGCTGATTCTATATC----CCA 80423 || || | || ||||| || ||||| ||||| | | || || || || Sbjct 5462 GTGAAGAACTTGCTAGACATGAGGTTGTATGTCTCCAGGACACGCTCAATGTCGTCTCCC 5521 Query 80424 TTGATGAATTCCTACCGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTT 80483 |||| || || | || ||||| | ||||||||| || | ||||| |||||| Sbjct 5522 CAGATG----CCAACAGACACCCGCATAATCATGTGCTGTGGCCGCTCAACAATCTTGCC 5577 Query 80484 ATTTATTTTCAACAAGTAAGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAA 80543 || | |||| | ||| || |||| ||| || || ||||| || | ||| || Sbjct 5578 ATCAAGCTTCAGAAGGTATGACCGCTCCAGAGTCTTGAAGCCAAAGTATTGGTAGTTGAA 5637 Query 80544 GTCTCGTTCGTAAATAATAACCGAGTTGAGTTTATCCTT 80582 |||||| ||||| | ||| | |||| ||| | ||||| Sbjct 5638 GTCTCGATCGTAGACAATGGCGGAGTCGAGCTCCTCCTT 5676 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 718247655962200