Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20pleuroti_20[genbank_20GCA_5F001721665.1_202016-09-08] 2,355 sequences; 38,137,656 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq535 127 3e-24 seq1903 125 1e-23 >seq535 Length=62126 Score = 127 bits (140), Expect = 3e-24 Identities = 356/544 (65%), Gaps = 8/544 (1%) Strand=Plus/Plus Query 42079 GTGCAGACCCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCC 42138 ||||||||||||||| | | || | ||||||||||| || || || ||||| || || Sbjct 15105 GTGCAGACCCTCATCACGAGAGATGAGCTCGTTGGAAAAGGTCAGACCAGGCATGAGACC 15164 Query 42139 ACGCTTTTTAAGCCAAAATATAGACGCAAATGATCCAGAAAAGAAGATTCCTTCTACTGC 42198 ||||| || | ||| || || || ||||| | || |||||||| || || || || Sbjct 15165 TCGCTTCTTGACCCAGAAGATGGAGGCAAAGGCACCGCTGAAGAAGATGCCCTCGACGGC 15224 Query 42199 CGCAAAGGCAATAAGTCTCTCTCCA---TAACCGGCACTGTCATGTATCCACTTTTGAGC 42255 |||||||||| || | || || || | |||| || |||||||| || Sbjct 15225 GGCAAAGGCAACCAGGCGCTGGGCAAAGGAAGAGTTCTTGTCCTGAATCCACTTGATGGC 15284 Query 42256 CCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGATAGttttt 42315 ||| |||||||| || | ||||| || || || ||||| || ||||| ||| | Sbjct 15285 CCAGTCGGCCTTTTTGCGAATGCAAGGAATGGTCTCAATGGCGTTGAAGAGGTAGCTGCG 15344 Query 42316 ttCATTACTATCTTTAACATATGTATCGATCAAAAGACTATACATTTCTGAATGAATGTT 42375 | | | || || | || || ||||| | || || | || || || ||||| Sbjct 15345 CTGGCTGTTCTCCTTGATGTAGGTGTCGATGAGCAGGGAGTAGGTCTCGGAGTGGATGTT 15404 Query 42376 TTCAATGGCCATCTGAAATCCGTAGAAACATCTGGCCTCGGTAACCTGTACTTCTGTACA 42435 || || ||||| || |||||||| |||| ||||||| | ||| || || | Sbjct 15405 CTCCATCATGATCTGGAAGCCGTAGAAGCATCGAGCCTCGGGGATCTGGACCTCGCCGCT 15464 Query 42436 AAATCGTTCAGCTAAATTTTCGTTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATAC 42495 || || || | | || ||||| || || || ||| ||| ||||| || |||| | Sbjct 15465 GAAGCGCTCGACCAGGTTCTCGTTGACAATGCCATCAGAGGCGGCAAAGAAGGCCAGGAT 15524 Query 42496 ATGTTTTATAAAATATTTTTCGTCCGGTGTTAA----TTTATTCCAATCATTGATATCTT 42551 || || || || || |||| | ||| | || ||||| || | | ||| | Sbjct 15525 GTGAGAGATGAAGTACTTCTCGT-CATCGTTCAGGCGGTTGTTCCAGTCGTGCAGATCCT 15583 Query 42552 TAGATATATCTACTTCTTCTACCGTCCAAAATGATGCTTCTGCCTTTTTATACATATTCC 42611 | || | ||| | ||||| | ||||| || || || || |||||||| ||||| | || Sbjct 15584 TGGACAGATCAATCTCTTCGGCGGTCCAGAAGGAGGCCTCGGCCTTTTTGTACATTTGCC 15643 Query 42612 AGAT 42615 | || Sbjct 15644 AAAT 15647 >seq1903 Length=20131 Score = 125 bits (138), Expect = 1e-23 Identities = 279/413 (68%), Gaps = 8/413 (2%) Strand=Plus/Plus Query 71974 CCAGGACATTCATTCGGACACATCAATGACCACTCTCCATCATCATTT--ACTCGTTTCA 72031 ||||||||||| || || ||||| | | ||| || || || | | || || |||| Sbjct 4984 CCAGGACATTCGTTGGGGCACATGAGCGTCCAGTC--CAAGTTCTTCTCAACACGCTTCA 5041 Query 72032 TAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGCTCCTCGTTTC 72091 | ||||| || |||||||| ||||| | || | || | | | ||| || || | Sbjct 5042 TGAAGAGGTCGGGAATCCAGAGAGCAAGGAACAAGTCGCGAGCGCGGACCTCTTCCTTGC 5101 Query 72092 CTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATA 72151 | ||||| ||||| |||||| | | | || | ||||| || || | ||| | Sbjct 5102 CGTGGTTCTTGCGGAGATCAAGGAACTCAAAGACGTCGGCGTGCCAGGGCTCGAGGTAGA 5161 Query 72152 TGGCCATAACTCCCGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTAT 72211 |||| | | | || || || ||||| || |||||||| | ||||| || ||||| || Sbjct 5162 TGGCAAAAGCACCAGGACGCTTGTTACCACCCTGATCGACATATCTGGCAGTGTTGTTGA 5221 Query 72212 AAACTCTCAACATTGGAATAATACCATTGGATGCACCATTGGTCCCGGAGATATAGCTTC 72271 | |||| | ||| ||||||||||| ||||| | ||| ||||| || | || || | Sbjct 5222 ACACTCGAAGCATGGGAATAATACCGTTGGAGGTACCGTTGGTGCCAGCAATGTAAGAGC 5281 Query 72272 CACTGGCACGAAT--ATTGCTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAA 72329 | ||||||| || || || | || || || || || |||||||| || || | Sbjct 5282 CGGTGGCACGGATGCGGTGGACGTTCA-AG-CCGATACCACCAGCCATTTTGGAAATCAT 5339 Query 72330 TGCGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGT 72382 || ||| || | || |||||||| ||||| |||||||| ||| |||||| Sbjct 5340 GGCACATGTCTTCAGGGTGTCATAGATACCCTCGATACTATCGTCCTTCATGT 5392 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 671119443339800