Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20pleuroti_20[genbank_20GCA_5F001721665.1_202016-09-08] 2,355 sequences; 38,137,656 total letters Query= NC_004117.1 Length=158482 Score E Sequences producing significant alignments: (Bits) Value seq1667 104 2e-17 >seq1667 Length=31153 Score = 104 bits (114), Expect = 2e-17 Identities = 138/192 (72%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 142994 TCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAG 143053 || ||||| |||||||| ||||||| |||| ||| ||||| || ||||||||| || Sbjct 23203 TCCTTTTGAATGTTGTAGTCGCTCAAAGTGCGACCGTCCTCGAGCTGCTTACCAGCAAAG 23144 Query 143054 ATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGT 143113 || ||||| |||||||| || || || || || ||||| ||| ||| || | | Sbjct 23143 ATGAGACGCTGCTGATCCGGGGGGATACCCTCCTTGTCCTGAATCTTTGACTTGACATTG 23084 Query 143114 TCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACG 143173 || | ||||| | | || || || | || | |||||||||||||| || || ||| Sbjct 23083 TCGATGGTGTCTGATGACTCAACCTCCAATGTGATGGTCTTGCCGGTCAACGTCTTGACG 23024 Query 143174 AATATTTGCATA 143185 || || |||||| Sbjct 23023 AAGATCTGCATA 23012 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 506999474763600