Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichoderma_20pleuroti_20[genbank_20GCA_5F001721665.1_202016-09-08]
2,355 sequences; 38,137,656 total letters
Query= NC_004156.2
Length=231621
Score E
Sequences producing significant alignments: (Bits) Value
seq535 286 5e-72
seq1903 149 9e-31
>seq535
Length=62126
Score = 286 bits (316), Expect = 5e-72
Identities = 579/848 (68%), Gaps = 31/848 (4%)
Strand=Plus/Minus
Query 125019 ATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCTTTTGGACGGTCGAAGAGGTCGATCTG 125078
|||||| |||||||||||||||| |||||||||| ||||| | ||||||| | ||||||
Sbjct 15647 ATTTGGCAAATGTACAAAAAGGCCGAGGCCTCCTTCTGGACCGCCGAAGAGATTGATCTG 15588
Query 125079 TCCAAGGACCTGTACGATTGGGAGACTCGTTTGACTGAAACTGAGCGAGAG----TTTAT 125134
|||||||| ||| |||| ||| | | || ||| || ||| ||||| || ||
Sbjct 15587 TCCAAGGATCTGCACGACTGGAACAACCGCCTGAACGA---TGA-CGAGAAGTACTTCAT 15532
Query 125135 ATCGCACATTTTGGCCTTCTTTGCCGGCTCCGATGGAATCGTCAACGACAATCTGTTGAC 125194
|| ||||| ||||||||||||||| ||| ||||| || |||||||| || ||| |
Sbjct 15531 CTCTCACATCCTGGCCTTCTTTGCCGCCTCTGATGGCATTGTCAACGAGAACCTGGTCGA 15472
Query 125195 ACGATTCTCTCAAGAGTTGACCATTCCAGAGGTGTCG-TGCTTTTACGGATTCCAAATCA 125253
|| ||| ||| | || || |||| ||| ||||| ||||| ||||| ||||
Sbjct 15471 GCGCTTCAGCGGCGAGGTCCAGATCCCCGAGGC-TCGATGCTTCTACGGCTTCCAGATCA 15413
Query 125254 TGATTGAGAACGTGCACTCGGAAATGTACTCTACACTGATTGACATGTACATTC--GCGA 125311
|||| |||||| | ||||| || | ||||| || || |||| ||||| | ||
Sbjct 15412 TGATGGAGAACATCCACTCCGAGACCTACTCCCTGCTCATCGACACCTACATCAAGGAGA 15353
Query 125312 TCCGCAA-CGTAAACACATGCTCTTTAACGCAATCGACACGGTGCCGTCTATACGTAAAA 125370
| || | || | || ||||| ||||| || || || | || | || || ||||
Sbjct 15352 ACAGCCAGCGCAGCTAC---CTCTTCAACGCCATTGAGACCATTCCTTGCATTCGCAAAA 15296
Query 125371 AGGCTCAATGGGTGATTCGGTGGATCGATGACGACAAGTCTTCGTACGCCGACAGACTGG 125430
|||| | |||| || |||||| | ||| | || ||||| | ||| | | ||||
Sbjct 15295 AGGCCGACTGGGCCATCAAGTGGATTCAGGACAAGAACTCTTCCTTTGCCCAGCGCCTGG 15236
Query 125431 TGGCATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGGTAGTTTTGCGGCCATCTTTTGGC 125490
| || || |||||||| |||||||||||||| ||| ||||| ||||||| |||
Sbjct 15235 TTGCCTTTGCCGCCGTCGAGGGCATCTTCTTCAGCGGTGCCTTTGCCTCCATCTTCTGGG 15176
Query 125491 TCAAGAAGCGCGGACTCATGCCCGGACTGACGCACAGTAACGAGTTTATATCTCGAGACG 125550
|||||||||| || |||||||| || ||||| |||||| | || ||||| || |
Sbjct 15175 TCAAGAAGCGAGGTCTCATGCCTGGTCTGACCTTTTCCAACGAGCTCATCTCTCGTGATG 15116
Query 125551 AGGGCCTACACTGTGACTTTGCCATTCTACTGTTTCGCAACTATCTGCGTCCCGAGTGCA 125610
|||| || ||| |||||||||| || ||| ||| | | | | || |
Sbjct 15115 AGGGTCTGCACACTGACTTTGCCTGCCTGCTG------CACTCT---CACCTCAAGAACC 15065
Query 125611 GATCCAGCGATGAAAAGGTCATCAACATTGTAACCGATGCCGTGAGGATAGAACAAGAGT 125670
| ||||| | || | | || |||| | ||||| || || | || || || ||||
Sbjct 15064 GTGCCAGCAAGGAGATGATCCGTGACATCATCACCGACGCTGTCCGAATTGAGCAGGAGT 15005
Query 125671 TTCTAACCGAATCCCTACCGGTCAGCATGATTGGCATGAACTGCAAGCTAATGTGCGAGT 125730
| | ||||| | || || | | || |||||||||||| || || ||| |||
Sbjct 15004 TCTTGACCGAGGCTCTCCCCTGCGCCTTGCTTGGCATGAACTCCAGCCTGATGAAGCAGT 14945
Query 125731 ACATAGAGTTTGTGGCAGATCGTCTACTGTACGAGTTGATTGGC--CG-CAAGATTTACA 125787
|||| |||||||| || || || || ||| || | ||| || ||| | ||||
Sbjct 14944 ACATTGAGTTTGTTGCCGACCGCCTGCTGGTCG---CTCTCGGCAACGAAAAGGTCTACA 14888
Query 125788 ACGCCAAGAATCCCTTTGATTTCATGACCAGCATATCACTAGAGGGTAAGACCAACTTTT 125847
| | || |||||||| |||||| | ||| || || | || ||||||||||| |
Sbjct 14887 AGTCTTCCAACCCCTTTGACTTCATGGAGAACATTTCTCTCGGTGGCAAGACCAACTTCT 14828
Query 125848 TCGAGAAG 125855
||||||||
Sbjct 14827 TCGAGAAG 14820
>seq1903
Length=20131
Score = 149 bits (164), Expect = 9e-31
Identities = 308/452 (68%), Gaps = 16/452 (4%)
Strand=Plus/Minus
Query 96876 CAGGGCGGCAATAAACGGCCAGGCGCTATAGCCGTCTACTTGGAACCTTGGCACGCGGAC 96935
||||| || || || || || || ||| | ||| ||||| | || || |||||||| |||
Sbjct 5195 CAGGGTGGTAACAAGCGTCCTGGTGCTTTTGCCATCTACCTCGAGCCCTGGCACGCCGAC 5136
Query 96936 GTTTTTGACTTTATCGAGATGCGCAAAAACTCTGGCTTTGAAGAGGCACGAGCCAGGGAC 96995
|| ||||| || | || | ||||| ||| ||| ||||||| || || | |||
Sbjct 5135 GTCTTTGAGTTCCTTGATCTCCGCAAGAACCACGGCAAGGAAGAGGTCCGCGCTCGCGAC 5076
Query 96996 TTGTTTTATGCACTCTGGGTGCCAGATTTGTTCATGAAGCGCGT--CAACGACGGTGGCT 97053
||||| ||| |||||| | || || | ||||||||||| || | || |||
Sbjct 5075 TTGTTCCTTGCTCTCTGGATTCCCGACCTCTTCATGAAGCGTGTTGAGAAGAACTTGG-- 5018
Query 97054 ACTGGAGCCTAATGTGCCCCGACTCGTCACCCGGTCTGTCCGATTGCTGGGGCGAAGAGT 97113
|||||| || ||||||||| || | || || || | || |||| ||||| ||||
Sbjct 5017 ACTGGACGCTCATGTGCCCCAACGAATGTCCTGGCCTTGCTGACTGCTATGGCGAGGAGT 4958
Query 97114 TTGAGGCCAAGTACACGGCCTACGAGCAAGAGGGCCGATACGTGAGACG--AGTCGATGC 97171
| |||||| ||| | |||||| | ||||| ||||| | || || | || |
Sbjct 4957 TCGAGGCCTTGTATGAGAAGTACGAGAAGGAGGG-----ACGTG-GTCGCAAGACCATCC 4904
Query 97172 ACG---AGAA-CTGTGGAAGGCCATCGTGACGGCTCAGGTAGAGACTGGAACTCCGTACA 97227
|| |||| |||||| | ||||| || || ||| |||||||| | || | ||
Sbjct 4903 GCGCTCAGAAGCTGTGGTATTCCATCCTGGAAGCCCAGACCGAGACTGGTAACCCCTTCA 4844
Query 97228 TTCTCTACAAGGATACCGTGAATCGCAACAGCAACCAACGCCACTTGGGCACCATCAAGG 97287
| |||||||||||| | || ||||| ||||||||| || |||| ||||||
Sbjct 4843 TGCTCTACAAGGATCACTGCAACCGCAAGAGCAACCAAAAGAACCTGGGAACCATCCGCA 4784
Query 97288 GCTCCAATCTGTGCACGGAAATTGTAGAGTAC 97319
||||||| || ||||| || || | ||||||
Sbjct 4783 GCTCCAACCTCTGCACCGAGATCATCGAGTAC 4752
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 741037385069800
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |