Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20pleuroti_20[genbank_20GCA_5F001721665.1_202016-09-08] 2,355 sequences; 38,137,656 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq535 286 5e-72 seq1903 149 9e-31 >seq535 Length=62126 Score = 286 bits (316), Expect = 5e-72 Identities = 579/848 (68%), Gaps = 31/848 (4%) Strand=Plus/Minus Query 125019 ATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCTTTTGGACGGTCGAAGAGGTCGATCTG 125078 |||||| |||||||||||||||| |||||||||| ||||| | ||||||| | |||||| Sbjct 15647 ATTTGGCAAATGTACAAAAAGGCCGAGGCCTCCTTCTGGACCGCCGAAGAGATTGATCTG 15588 Query 125079 TCCAAGGACCTGTACGATTGGGAGACTCGTTTGACTGAAACTGAGCGAGAG----TTTAT 125134 |||||||| ||| |||| ||| | | || ||| || ||| ||||| || || Sbjct 15587 TCCAAGGATCTGCACGACTGGAACAACCGCCTGAACGA---TGA-CGAGAAGTACTTCAT 15532 Query 125135 ATCGCACATTTTGGCCTTCTTTGCCGGCTCCGATGGAATCGTCAACGACAATCTGTTGAC 125194 || ||||| ||||||||||||||| ||| ||||| || |||||||| || ||| | Sbjct 15531 CTCTCACATCCTGGCCTTCTTTGCCGCCTCTGATGGCATTGTCAACGAGAACCTGGTCGA 15472 Query 125195 ACGATTCTCTCAAGAGTTGACCATTCCAGAGGTGTCG-TGCTTTTACGGATTCCAAATCA 125253 || ||| ||| | || || |||| ||| ||||| ||||| ||||| |||| Sbjct 15471 GCGCTTCAGCGGCGAGGTCCAGATCCCCGAGGC-TCGATGCTTCTACGGCTTCCAGATCA 15413 Query 125254 TGATTGAGAACGTGCACTCGGAAATGTACTCTACACTGATTGACATGTACATTC--GCGA 125311 |||| |||||| | ||||| || | ||||| || || |||| ||||| | || Sbjct 15412 TGATGGAGAACATCCACTCCGAGACCTACTCCCTGCTCATCGACACCTACATCAAGGAGA 15353 Query 125312 TCCGCAA-CGTAAACACATGCTCTTTAACGCAATCGACACGGTGCCGTCTATACGTAAAA 125370 | || | || | || ||||| ||||| || || || | || | || || |||| Sbjct 15352 ACAGCCAGCGCAGCTAC---CTCTTCAACGCCATTGAGACCATTCCTTGCATTCGCAAAA 15296 Query 125371 AGGCTCAATGGGTGATTCGGTGGATCGATGACGACAAGTCTTCGTACGCCGACAGACTGG 125430 |||| | |||| || |||||| | ||| | || ||||| | ||| | | |||| Sbjct 15295 AGGCCGACTGGGCCATCAAGTGGATTCAGGACAAGAACTCTTCCTTTGCCCAGCGCCTGG 15236 Query 125431 TGGCATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGGTAGTTTTGCGGCCATCTTTTGGC 125490 | || || |||||||| |||||||||||||| ||| ||||| ||||||| ||| Sbjct 15235 TTGCCTTTGCCGCCGTCGAGGGCATCTTCTTCAGCGGTGCCTTTGCCTCCATCTTCTGGG 15176 Query 125491 TCAAGAAGCGCGGACTCATGCCCGGACTGACGCACAGTAACGAGTTTATATCTCGAGACG 125550 |||||||||| || |||||||| || ||||| |||||| | || ||||| || | Sbjct 15175 TCAAGAAGCGAGGTCTCATGCCTGGTCTGACCTTTTCCAACGAGCTCATCTCTCGTGATG 15116 Query 125551 AGGGCCTACACTGTGACTTTGCCATTCTACTGTTTCGCAACTATCTGCGTCCCGAGTGCA 125610 |||| || ||| |||||||||| || ||| ||| | | | | || | Sbjct 15115 AGGGTCTGCACACTGACTTTGCCTGCCTGCTG------CACTCT---CACCTCAAGAACC 15065 Query 125611 GATCCAGCGATGAAAAGGTCATCAACATTGTAACCGATGCCGTGAGGATAGAACAAGAGT 125670 | ||||| | || | | || |||| | ||||| || || | || || || |||| Sbjct 15064 GTGCCAGCAAGGAGATGATCCGTGACATCATCACCGACGCTGTCCGAATTGAGCAGGAGT 15005 Query 125671 TTCTAACCGAATCCCTACCGGTCAGCATGATTGGCATGAACTGCAAGCTAATGTGCGAGT 125730 | | ||||| | || || | | || |||||||||||| || || ||| ||| Sbjct 15004 TCTTGACCGAGGCTCTCCCCTGCGCCTTGCTTGGCATGAACTCCAGCCTGATGAAGCAGT 14945 Query 125731 ACATAGAGTTTGTGGCAGATCGTCTACTGTACGAGTTGATTGGC--CG-CAAGATTTACA 125787 |||| |||||||| || || || || ||| || | ||| || ||| | |||| Sbjct 14944 ACATTGAGTTTGTTGCCGACCGCCTGCTGGTCG---CTCTCGGCAACGAAAAGGTCTACA 14888 Query 125788 ACGCCAAGAATCCCTTTGATTTCATGACCAGCATATCACTAGAGGGTAAGACCAACTTTT 125847 | | || |||||||| |||||| | ||| || || | || ||||||||||| | Sbjct 14887 AGTCTTCCAACCCCTTTGACTTCATGGAGAACATTTCTCTCGGTGGCAAGACCAACTTCT 14828 Query 125848 TCGAGAAG 125855 |||||||| Sbjct 14827 TCGAGAAG 14820 >seq1903 Length=20131 Score = 149 bits (164), Expect = 9e-31 Identities = 308/452 (68%), Gaps = 16/452 (4%) Strand=Plus/Minus Query 96876 CAGGGCGGCAATAAACGGCCAGGCGCTATAGCCGTCTACTTGGAACCTTGGCACGCGGAC 96935 ||||| || || || || || || ||| | ||| ||||| | || || |||||||| ||| Sbjct 5195 CAGGGTGGTAACAAGCGTCCTGGTGCTTTTGCCATCTACCTCGAGCCCTGGCACGCCGAC 5136 Query 96936 GTTTTTGACTTTATCGAGATGCGCAAAAACTCTGGCTTTGAAGAGGCACGAGCCAGGGAC 96995 || ||||| || | || | ||||| ||| ||| ||||||| || || | ||| Sbjct 5135 GTCTTTGAGTTCCTTGATCTCCGCAAGAACCACGGCAAGGAAGAGGTCCGCGCTCGCGAC 5076 Query 96996 TTGTTTTATGCACTCTGGGTGCCAGATTTGTTCATGAAGCGCGT--CAACGACGGTGGCT 97053 ||||| ||| |||||| | || || | ||||||||||| || | || ||| Sbjct 5075 TTGTTCCTTGCTCTCTGGATTCCCGACCTCTTCATGAAGCGTGTTGAGAAGAACTTGG-- 5018 Query 97054 ACTGGAGCCTAATGTGCCCCGACTCGTCACCCGGTCTGTCCGATTGCTGGGGCGAAGAGT 97113 |||||| || ||||||||| || | || || || | || |||| ||||| |||| Sbjct 5017 ACTGGACGCTCATGTGCCCCAACGAATGTCCTGGCCTTGCTGACTGCTATGGCGAGGAGT 4958 Query 97114 TTGAGGCCAAGTACACGGCCTACGAGCAAGAGGGCCGATACGTGAGACG--AGTCGATGC 97171 | |||||| ||| | |||||| | ||||| ||||| | || || | || | Sbjct 4957 TCGAGGCCTTGTATGAGAAGTACGAGAAGGAGGG-----ACGTG-GTCGCAAGACCATCC 4904 Query 97172 ACG---AGAA-CTGTGGAAGGCCATCGTGACGGCTCAGGTAGAGACTGGAACTCCGTACA 97227 || |||| |||||| | ||||| || || ||| |||||||| | || | || Sbjct 4903 GCGCTCAGAAGCTGTGGTATTCCATCCTGGAAGCCCAGACCGAGACTGGTAACCCCTTCA 4844 Query 97228 TTCTCTACAAGGATACCGTGAATCGCAACAGCAACCAACGCCACTTGGGCACCATCAAGG 97287 | |||||||||||| | || ||||| ||||||||| || |||| |||||| Sbjct 4843 TGCTCTACAAGGATCACTGCAACCGCAAGAGCAACCAAAAGAACCTGGGAACCATCCGCA 4784 Query 97288 GCTCCAATCTGTGCACGGAAATTGTAGAGTAC 97319 ||||||| || ||||| || || | |||||| Sbjct 4783 GCTCCAACCTCTGCACCGAGATCATCGAGTAC 4752 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 741037385069800