Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20pleuroti_20[genbank_20GCA_5F001721665.1_202016-09-08] 2,355 sequences; 38,137,656 total letters Query= NC_005839.2 Length=131680 Score E Sequences producing significant alignments: (Bits) Value seq1667 114 1e-20 seq1790 93.3 4e-14 >seq1667 Length=31153 Score = 114 bits (126), Expect = 1e-20 Identities = 147/203 (72%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 48524 TGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTGC 48583 ||||||||||||||||||||||||||||| || ||| || ||||||| |||||| Sbjct 23215 TGAAGTGTGCTCTCCTTTTGAATGTTGTAGTCGCTCAAAGTGCGACCGTCCTCGAGCTGC 23156 Query 48584 TTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTC 48643 ||||| | | || | ||||||||||||| || | || ||||||||| ||| || Sbjct 23155 TTACCAGCAAAGATGAGACGCTGCTGATCCGGGGGGATACCCTCCTTGTCCTGAATCTTT 23096 Query 48644 TGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGTG 48703 ||||| | | ||||| || | ||||| ||| | ||| ||||| || ||||| Sbjct 23095 GACTTGACATTGTCGATGGTGTCTGATGACTCAACCTCCAATGTGATGGTCTTGCCGGTC 23036 Query 48704 AGAGTTTTCACAAAAATCTGCAT 48726 | || || || || |||||||| Sbjct 23035 AACGTCTTGACGAAGATCTGCAT 23013 Score = 102 bits (112), Expect = 7e-17 Identities = 151/212 (71%), Gaps = 4/212 (2%) Strand=Plus/Minus Query 48517 CACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTC 48576 ||| || || || ||||||||||| || |||||||| || ||| || |||| || Sbjct 23450 CACCAAGTGCAGCGTGCTCTCCTTCTGGATGTTGTAGTCGCTCAAGGTGCGACCGTCTTC 23391 Query 48577 CAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCAT 48636 |||||||||||| | | || || |||||||| || || | | ||||||||| Sbjct 23390 CAGCTGCTTACCAGCAAAGATCAAGCGCTGCTGGTCAGGAGGAATGCCCTCCTTGTCCTG 23331 Query 48637 AATTTTCTGCTTGA--TAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTT 48694 ||| || ||||| | | || ||||| |||| ||| ||| ||||| || || || Sbjct 23330 AATCTTGGACTTGACGTTGTCG--ATGGTGTCGGAAGATTCCACCTCGAGGGTGATTGTC 23273 Query 48695 TTACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726 || || |||||||| || || ||||||||||| Sbjct 23272 TTGCCTGTGAGAGTCTTGACGAAAATCTGCAT 23241 >seq1790 Length=95376 Score = 93.3 bits (102), Expect = 4e-14 Identities = 140/199 (70%), Gaps = 0/199 (0%) Strand=Plus/Plus Query 48535 CTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTA 48594 |||||| || |||||||| || | | ||| | ||||||||||||||||| || | Sbjct 27703 CTCCTTCTGGATGTTGTAGTCGGAGAGGGTTCGGCCATCCTCCAGCTGCTTACCAGCGAA 27762 Query 48595 AATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTCTGCTTGATAGA 48654 || || |||||||| ||| || | | ||||||||| || || ||||| | Sbjct 27763 GATCAATCGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTGGACTTGACATT 27822 Query 48655 CGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCAC 48714 | ||||| |||| ||||||| ||| | || || || || || ||||| || || || Sbjct 27823 GTCGATGGTGTCGGAAGACTCCACCTCAAGGGTGATCGTCTTCCCCGTGAGGGTCTTGAC 27882 Query 48715 AAAAATCTGCATCGTGTCT 48733 |||||||||||| || || Sbjct 27883 GAAAATCTGCATCTTGCCT 27901 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 421239109432355