Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichoderma_20pleuroti_20[genbank_20GCA_5F001721665.1_202016-09-08]
2,355 sequences; 38,137,656 total letters
Query= NC_005839.2
Length=131680
Score E
Sequences producing significant alignments: (Bits) Value
seq1667 114 1e-20
seq1790 93.3 4e-14
>seq1667
Length=31153
Score = 114 bits (126), Expect = 1e-20
Identities = 147/203 (72%), Gaps = 0/203 (0%)
Strand=Plus/Minus
Query 48524 TGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTGC 48583
||||||||||||||||||||||||||||| || ||| || ||||||| ||||||
Sbjct 23215 TGAAGTGTGCTCTCCTTTTGAATGTTGTAGTCGCTCAAAGTGCGACCGTCCTCGAGCTGC 23156
Query 48584 TTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTC 48643
||||| | | || | ||||||||||||| || | || ||||||||| ||| ||
Sbjct 23155 TTACCAGCAAAGATGAGACGCTGCTGATCCGGGGGGATACCCTCCTTGTCCTGAATCTTT 23096
Query 48644 TGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGTG 48703
||||| | | ||||| || | ||||| ||| | ||| ||||| || |||||
Sbjct 23095 GACTTGACATTGTCGATGGTGTCTGATGACTCAACCTCCAATGTGATGGTCTTGCCGGTC 23036
Query 48704 AGAGTTTTCACAAAAATCTGCAT 48726
| || || || || ||||||||
Sbjct 23035 AACGTCTTGACGAAGATCTGCAT 23013
Score = 102 bits (112), Expect = 7e-17
Identities = 151/212 (71%), Gaps = 4/212 (2%)
Strand=Plus/Minus
Query 48517 CACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTC 48576
||| || || || ||||||||||| || |||||||| || ||| || |||| ||
Sbjct 23450 CACCAAGTGCAGCGTGCTCTCCTTCTGGATGTTGTAGTCGCTCAAGGTGCGACCGTCTTC 23391
Query 48577 CAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCAT 48636
|||||||||||| | | || || |||||||| || || | | |||||||||
Sbjct 23390 CAGCTGCTTACCAGCAAAGATCAAGCGCTGCTGGTCAGGAGGAATGCCCTCCTTGTCCTG 23331
Query 48637 AATTTTCTGCTTGA--TAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTT 48694
||| || ||||| | | || ||||| |||| ||| ||| ||||| || || ||
Sbjct 23330 AATCTTGGACTTGACGTTGTCG--ATGGTGTCGGAAGATTCCACCTCGAGGGTGATTGTC 23273
Query 48695 TTACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726
|| || |||||||| || || |||||||||||
Sbjct 23272 TTGCCTGTGAGAGTCTTGACGAAAATCTGCAT 23241
>seq1790
Length=95376
Score = 93.3 bits (102), Expect = 4e-14
Identities = 140/199 (70%), Gaps = 0/199 (0%)
Strand=Plus/Plus
Query 48535 CTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTA 48594
|||||| || |||||||| || | | ||| | ||||||||||||||||| || |
Sbjct 27703 CTCCTTCTGGATGTTGTAGTCGGAGAGGGTTCGGCCATCCTCCAGCTGCTTACCAGCGAA 27762
Query 48595 AATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTCTGCTTGATAGA 48654
|| || |||||||| ||| || | | ||||||||| || || ||||| |
Sbjct 27763 GATCAATCGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTGGACTTGACATT 27822
Query 48655 CGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCAC 48714
| ||||| |||| ||||||| ||| | || || || || || ||||| || || ||
Sbjct 27823 GTCGATGGTGTCGGAAGACTCCACCTCAAGGGTGATCGTCTTCCCCGTGAGGGTCTTGAC 27882
Query 48715 AAAAATCTGCATCGTGTCT 48733
|||||||||||| || ||
Sbjct 27883 GAAAATCTGCATCTTGCCT 27901
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 421239109432355
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |