Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20pleuroti_20[genbank_20GCA_5F001721665.1_202016-09-08] 2,355 sequences; 38,137,656 total letters Query= NC_006549.1 Length=140131 Score E Sequences producing significant alignments: (Bits) Value seq1667 95.1 1e-14 seq1790 84.2 2e-11 >seq1667 Length=31153 Score = 95.1 bits (104), Expect = 1e-14 Identities = 147/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 94798 CACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTC 94857 ||||||||||| || ||||| || | ||| || ||||||| ||| || || Sbjct 23450 CACCAAGTGCAGCGTGCTCTCCTTCTGGATGTTGTAGTCGCTCAAGGTGCGACCGTCTTC 23391 Query 94858 CAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATA 94917 |||||| || || ||||||| || | ||||| || |||||||| || || ||||| | Sbjct 23390 CAGCTGCTTACCAGCAAAGATCAAGCGCTGCTGGTCAGGAGGAATGCCCTCCTTGTCCTG 23331 Query 94918 AATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTT 94977 ||| || | ||||||| | ||| ||||| | || || || | ||||| || || Sbjct 23330 AATCTTGGACTTGACGTTGTCGATGGTGTCGGAAGATTCCACCTCGAGGGTGATTGTCTT 23271 Query 94978 TCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 || || ||||| || || || |||||||| Sbjct 23270 GCCTGTGAGAGTCTTGACGAAAATCTGCAT 23241 Score = 93.3 bits (102), Expect = 4e-14 Identities = 135/191 (71%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 94817 TCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAG 94876 |||||||| | ||| || ||||||| |||| ||||| ||||| || || ||||| Sbjct 23203 TCCTTTTGAATGTTGTAGTCGCTCAAAGTGCGACCGTCCTCGAGCTGCTTACCAGCAAAG 23144 Query 94877 ATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCG 94936 || | | |||||||| || || ||||| || ||||| | ||| |||| |||||| | Sbjct 23143 ATGAGACGCTGCTGATCCGGGGGGATACCCTCCTTGTCCTGAATCTTTGACTTGACATTG 23084 Query 94937 CCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACA 94996 ||| ||||| | || || || | |||||||| || || || | || || || Sbjct 23083 TCGATGGTGTCTGATGACTCAACCTCCAATGTGATGGTCTTGCCGGTCAACGTCTTGACG 23024 Query 94997 AAGATCTGCAT 95007 ||||||||||| Sbjct 23023 AAGATCTGCAT 23013 >seq1790 Length=95376 Score = 84.2 bits (92), Expect = 2e-11 Identities = 150/217 (69%), Gaps = 4/217 (2%) Strand=Plus/Plus Query 94793 CGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGA- 94851 |||| |||| ||| | ||||| ||||| || | ||| || ||| | || ||| | Sbjct 27680 CGCAGGACCAGGTGGAGGGTAGACTCCTTCTGGATGTTGTAGTCGG--AGAGGGTTCGGC 27737 Query 94852 -ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTT 94910 |||||||||||| || || | ||||| |||| ||||| || || ||||| || || | Sbjct 27738 CATCCTCCAGCTGCTTACCAGCGAAGATCAATCGCTGCTGGTCCGGGGGAATGCCCTCCT 27797 Query 94911 TGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGA 94970 |||| | || || | |||||| | ||| ||||| | || || |||| |||| Sbjct 27798 TGTCCTGGATCTTGGACTTGACATTGTCGATGGTGTCGGAAGACTCCACCTCAAGGGTGA 27857 Query 94971 TGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 | || || || || || || || || || |||||||| Sbjct 27858 TCGTCTTCCCCGTGAGGGTCTTGACGAAAATCTGCAT 27894 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448278003427800