Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20pleuroti_20[genbank_20GCA_5F001721665.1_202016-09-08] 2,355 sequences; 38,137,656 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq1857 107 3e-19 seq1824 104 4e-18 >seq1857 Length=91414 Score = 107 bits (118), Expect = 3e-19 Identities = 86/101 (85%), Gaps = 2/101 (2%) Strand=Plus/Plus Query 16433 GCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 || |||||||| || | ||| |||||| || |||||||| || || |||||||| ||||| Sbjct 45574 GCCAAGCGTCACCGTAAGAT-TCTTCGTGACAACATCCAGGGCATTACCAAGCCCGCTAT 45632 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTG 16532 ||| ||||| |||||||||||||| ||||||||| |||||| Sbjct 45633 CCGACGTCTCGCTCGTCGTGGTGGTGTCAAGCGTATCTCTG 45673 Score = 84.2 bits (92), Expect = 3e-12 Identities = 117/164 (71%), Gaps = 0/164 (0%) Strand=Plus/Plus Query 16536 TGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATG 16595 || |||| || |||| |||| ||| | ||| ||||||| || || |||| ||||| Sbjct 45749 TGATCTACGAGGAGACCCGTGGTGTCCTCAAGTCCTTCCTCGAGGGTGTCATCCGTGATG 45808 Query 16596 CTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATG 16655 | || || ||||||||||| || || ||||| ||||| || | || | ||||||| Sbjct 45809 CCGTCACATACACCGAGCACGCCAAGCGCAAGACCGTCACATCACTAGACGTTGTCTATG 45868 Query 16656 CATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGAAGTTAA 16699 | ||||||| || ||||| | | || ||||| || ||||| Sbjct 45869 CCCTGAAACGACAGGGCCGCACCCTGTACGGTTTCGGTGGTTAA 45912 >seq1824 Length=92078 Score = 104 bits (114), Expect = 4e-18 Identities = 85/101 (84%), Gaps = 2/101 (2%) Strand=Plus/Minus Query 16433 GCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 || |||||||| || | ||| |||||| || ||||| || || ||||||||||| ||||| Sbjct 77512 GCCAAGCGTCACCGAAAGAT-TCTTCGTGACAACATTCAGGGCATCACCAAGCCTGCTAT 77454 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTG 16532 ||| ||||| || ||||||||||| ||||||||| |||||| Sbjct 77453 CCGACGTCTCGCCCGTCGTGGTGGTGTCAAGCGTATCTCTG 77413 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79073046807015