Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20pleuroti_20[genbank_20GCA_5F001721665.1_202016-09-08] 2,355 sequences; 38,137,656 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq1903 336 6e-87 >seq1903 Length=20131 Score = 336 bits (372), Expect = 6e-87 Identities = 1045/1592 (66%), Gaps = 54/1592 (3%) Strand=Plus/Minus Query 363595 CAGATGTCTTCTTGCTTTCTTCTAAAAATGAAGGACGATTCCATCGAGGGTATCTTTGAC 363654 ||| |||| || ||||| | | | |||||||||||| ||||||||||||| |||| Sbjct 5417 CAGCTGTCCTCATGCTTCTTGGTCGACATGAAGGACGATAGTATCGAGGGTATCTATGAC 5358 Query 363655 ACACTTAAGAATTGTGCTCTTATTTCCAAGAATGCAGGCGGAATTGGTGT-ATCGATCCA 363713 || || |||| ||||| | |||||||| | || || || || || | | || |||| Sbjct 5357 ACCCTGAAGACATGTGCCATGATTTCCAAAATGGCTGGTGGTATCGGCTTGAACG-TCCA 5299 Query 363714 CAATGTTCGTGC-ACAGAACAGTTACATTCGCGGCACAGGGGGATACTCGAATGGGCTGG 363772 | | ||||| || | | ||||||| ||||| || ||| || || | Sbjct 5298 CCGCATCCGTGCCACCGG-CTCTTACATTGCTGGCACCAACGGTACCTCCAACGGTATTA 5240 Query 363773 TTCCCATGCTTCGTGTGTTTGACAATACTGCGAGGTACGTCGACCAGGGTGGAGGAAAGC 363832 ||||||||||||| ||||| |||| ||||| || || ||||| |||||||| |||| Sbjct 5239 TTCCCATGCTTCGAGTGTTCAACAACACTGCCAGATATGTCGATCAGGGTGGTAACAAGC 5180 Query 363833 GCAAAGGGGCGTTTGCTATGTATCTCGAGCCTCATCATGCCGATATTTTTGAGTTTCTTG 363892 | || || ||||| || || |||||||| || ||||| | |||||||| |||| Sbjct 5179 GTCCTGGTGCTTTTGCCATCTACCTCGAGCCCTGGCACGCCGACGTCTTTGAGTTCCTTG 5120 Query 363893 AGCTCCGGAA-AAACACGGGAA--AAGAGGAATTGCGTGCACGTGATCTGTTCTATGCAC 363949 | ||||| || || ||||| || |||||| | || || || || ||||| ||| | Sbjct 5119 ATCTCCGCAAGAACCACGGCAAGGAAGAGG---TCCGCGCTCGCGACTTGTTCCTTGCTC 5063 Query 363950 TTTGGGTTTCTGACCATTTTATGAAGCGCGTGGAGGCAGGTA--AGAATTGGTCACTCTT 364007 | ||| || | |||| || |||||||| || ||| | | | | | ||| | ||| | Sbjct 5062 TCTGGATTCCCGACCTCTTCATGAAGCGTGTTGAG--AAGAACTTGGACTGGACGCTCAT 5005 Query 364008 TTGCCCACACGAATGTCCAGGTCTTTCCGA-TG-TATGGGGTGACGACTATGTTGCTCTA 364065 ||||| |||||||||| || ||| | || || ||| || || || | | || | Sbjct 5004 GTGCCCCAACGAATGTCCTGGCCTTGCTGACTGCTAT--GGCGAGGAGTTCGAGGCCTTG 4947 Query 364066 TACGAAAAGTATGAATCGGAGGGAAAGGCTCGTAAGACAATTCCCGCACAGAAGCTATGG 364125 || || ||||| || ||||||| | ||| ||||| || | ||| |||||||| ||| Sbjct 4946 TATGAGAAGTACGAGAAGGAGGGACGTGGTCGCAAGACCATCCGCGCTCAGAAGCTGTGG 4887 Query 364126 TTTGCCATCATGGATTCGCAGATTGAGACAGGAACACCCTATATGTTGTACAAAGATTCG 364185 | | ||||| |||| | |||| ||||| || | |||| ||| | ||||| ||| Sbjct 4886 TATTCCATCCTGGAAGCCCAGACCGAGACTGGTAACCCCTTCATGCTCTACAAGGATCAC 4827 Query 364186 TGCAACCGCAAGTCCAACCAGCAGCACCTTGGTACAATTCAGCAG-AGCAACCTATGTAC 364244 |||||||||||| |||||| || |||| || || | || |||| |||||| || || Sbjct 4826 TGCAACCGCAAGAGCAACCAAAAGAACCTGGGAACCA-TCCGCAGCTCCAACCTCTGCAC 4768 Query 364245 CGAGATTATTGAATACACCGCTCCCGACGAGACTGCCGTATGTAACCTTGCGTCGATCGC 364304 |||||| || || ||| || || || ||| |||||| || ||| | || || | || Sbjct 4767 CGAGATCATCGAGTACTGTGCCCCAGATGAGGTTGCCGTGTGCAACTTGGCCTCTTTGGC 4708 Query 364305 GCTTCCGGCGTTTGT------AAAAGATGGTACTTTTGACCACCAGCATCTTTATGACGT 364358 || || || | || || || || | ||| || | ||| |||| || Sbjct 4707 CCTCCCTGCTTACGTCGACTACAACGAAGGCTGCTACGACTTTAAGAAGCTTCATGAAGT 4648 Query 364359 AACCTA--TCATGCTACTTGCAATCTCGACAAGGTTATCGACAAGAATTATTATCCAATT 364416 ||| | || | | | |||| || ||||| | || || || || ||||| | Sbjct 4647 CACCAAGGTCGTTGTCC--GCAACCTTAACAAGATCATTGATGTCAACTACTATCCTGTC 4590 Query 364417 CCTGAAGC-CG----AGCGTTCTAATATGCGTCATCGCCCGATTGGTCTTGGTGTACAGG 364471 | || || || ||| || ||||| || || || |||||| ||||||| |||| Sbjct 4589 CAGGAGGCTCGCAACAGC-----AACATGCGCCACCGACCTATTGGTGTTGGTGTCCAGG 4535 Query 364472 GCCTCGCTGACGTTTTTATGATGCTCAAGATGGCATTTGATTCGCCTGACGCTCGTGTTC 364531 | || || |||| ||| | || ||| | ||||| || || || ||||| | | Sbjct 4534 GTCTTGCCGACGCTTTCCTTGCCCTGCGCATGCCCTTTGAGTCTCCCGAGGCTCGCGAGC 4475 Query 364532 TAAATAAGGAGATCTTTGAAACAATGTATTTTGCCGCAATGACTGCTTCGTGTGATTTGG 364591 | || ||| |||||||||| ||||| || || || || ||||| || | | Sbjct 4474 TGAACAAGCAGATCTTTGAGACAATCTACCACGCGGCCCTGGAGGCTTCCATGGAGATTG 4415 Query 364592 CAAAAACCAAGGGAAAGTACTCTACTTATGAGGGGTCCCCTCTTTCGCAGGGAAAATTCC 364651 | || |||| ||| | | |||| || ||| || |||| | ||| Sbjct 4414 CCAAGGTGGAGGGTCCCTACGAATCGTTCAAGGGATCACCTGCATCCGAGGGCATCCTCC 4355 Query 364652 AGTTTGATCTATGGAATGTCACGCCATCTGTCCGATGGAACTGGGATACGCT-ACGTTCC 364710 | || || | ||| |||||| ||| |||| | ||| | ||||| |||| | | | Sbjct 4354 AATTCGACATGTGGGATGTCAAGCCTTCTGACTTGTGGGAGTGGGACTCGCTCAAGGAGC 4295 Query 364711 AACGTTAAGAAGCATGGTACTCGCAA---CTCCCTCGTTACAGCGCCCATGCCCACGGCT 364767 | | ||| |||| ||| ||||| || ||||| || ||||||||||| || Sbjct 4294 -AGATCAAGGAGCACGGTGTGCGCAACAGCTTGCTCGT---CGCCCCCATGCCCACTGCC 4239 Query 364768 TCTACTGCACAGATCCTCGGAAACAACGAGTGCTTCGAACCGTTTACAAGCAATCTTTAT 364827 ||| | ||||| || || ||||||||||||||||| || | || ||| | || Sbjct 4238 AGTACCTCCCAGATTCTGGGCAACAACGAGTGCTTCGAGCCCTACACTTCCAACATCTAC 4179 Query 364828 TCACGCCGGGTTCTTTCCGGAGAATTTCCGGTAGTTAATAAGTACCTAGTCAAGGATCTT 364887 || || || ||| |||| || || | ||| || || | || ||||||| || Sbjct 4178 CAGCGACGTGTCCTTGCCGGCGAGTTCCAGGTTGTCAACCCCTGGCTTCTCAAGGACCTG 4119 Query 364888 TCCGACCGCGGGCTGTGGGGTGACAGCATGAAGAACTATATCATCGCCGCTAATGGTTCT 364947 |||| ||| || ||| || |||||||||| |||||| || | || || || Sbjct 4118 GTCGACACCGGCCTCTGGTCCGATGCCATGAAGAACCGTATCATTGCTGAGAACGGCTCC 4059 Query 364948 GTGCAGAACATTCCAGGATTTCCAGAAGATCTGAAGCCTATTTACAAAACCGTATGGGAA 365007 | |||||||| || | || |||||| | ||| | | ||||| ||||| ||||| Sbjct 4058 ATTCAGAACATCCCCAACATCCCCGAAGATATCAAGGCCTTGTACAAGACCGTGTGGGAG 3999 Query 365008 ATTTCCATGCG---AACTCTCATTGATATGGCGGCCGATCGCGGTGCTTTTATCTGTCAG 365064 ||||| ||| || | || | |||||||| ||||| |||||||| || ||| Sbjct 3998 ATTTCTCAGCGCCAAATTGTC---CAGATGGCGGCTGATCGTGGTGCTTTCATTGACCAG 3942 Query 365065 AGCCAGTCGTTTAACGTATTCATGACTCAGCCAACCTCCGCCAAGCTTACATCCATGCAT 365124 |||||| | ||| | ||||| | || || | |||| |||| |||||| Sbjct 3941 TCCCAGTCCCTGAACATCCACATGAAGGACCCCACAATGGGCAAGATTACCAGCATGCAC 3882 Query 365125 TTCTACGGGTGGAAATCCGGTCTTAAGACAGG 365156 ||| || ||||| ||||| ||||| || Sbjct 3881 TTCACTGGCTGGAAGCTTGGTCTCAAGACCGG 3850 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1303314273341610