Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20pleuroti_20[genbank_20GCA_5F001721665.1_202016-09-08] 2,355 sequences; 38,137,656 total letters Query= NC_007921.1 Length=147544 Score E Sequences producing significant alignments: (Bits) Value seq1903 161 9e-35 seq1667 123 2e-23 seq1790 116 3e-21 seq2135 98.7 9e-16 >seq1903 Length=20131 Score = 161 bits (178), Expect = 9e-35 Identities = 851/1328 (64%), Gaps = 53/1328 (4%) Strand=Plus/Plus Query 145058 TTGACGACCTGAAACTCGCCGGCCAACACACGACGCAAATACACGTTAGACGTGAAGGGT 145117 ||||| ||||| ||||||||||| | ||||| ||| || | ||| || ||| |||| Sbjct 4141 TTGACAACCTGGAACTCGCCGGCAAGGACACGTCGCTGGTAGATGTTGGAAGTGTAGGGC 4200 Query 145118 TCAAAAGACTCGTTATTGCCCAGGATTTGAGCGGTCGTTGCGGTGGGCATGTACGCCACC 145177 || || ||||||| |||||||| || || | ||| | || ||||||||| || || Sbjct 4201 TCGAAGCACTCGTTGTTGCCCAGAATCTGGGAGGTACTGGCAGTGGGCATGGGGGCGACG 4260 Query 145178 AATAATGAATTGCGCAGGCCGTGCTTCTTGATGTCTTCCTTTAGCGTACCCCAATCCCAT 145237 | || ||||||| ||||||| |||||| | ||||| |||| |||| ||||| Sbjct 4261 AGCAAGCTGTTGCGCACACCGTGCTCCTTGATCTGCTCCTTGAGCGAGTCCCACTCCCAC 4320 Query 145238 AGCGAAGTCGGCCTCACGTCCCACATGTCGTACTGCAAAATGCCCTC-GCTGGCGGGGCT 145296 | || ||| | || |||||||||||| | || | |||||||| | || || | | Sbjct 4321 AAGTCAGAAGGCTTGACATCCCACATGTCGAATTGGAGGATGCCCTCGGATGCAGGTGAT 4380 Query 145297 GCCTTGAAAGGAACTGTAACTGCCCCAAGTTTTGGCGAGCTC---GCAACTCGCCTCCAG 145353 ||||| || || ||| ||| ||||| | ||| | || |||||||| Sbjct 4381 CCCTTG-AACGATTCGTAGGGACCCTCCACCTTGGCAATCTCCATGGAA---GCCTCCAG 4436 Query 145354 AGCGCCGAAATAAATTGTCTCGGCAATTTGCCTGTTGAGCAGCATCGC-TTCATCG---C 145409 || || || |||||||| || ||| |||| ||| |||| | ||| Sbjct 4437 GGCCGCGTGGTAGATTGTCTCAAAGATCTGCTTGTTCAGC----TCGCGAGCCTCGGGAG 4492 Query 145410 TCTCGTACGGCATGCGCAGCAGTACAAAAGCATCGGCGAGCCCCTGTATTCCCACGCCGA 145469 ||| | ||||||||||| | ||||| ||||| || ||||| | || || || | Sbjct 4493 ACTCAAAGGGCATGCGCAGGGCAAGGAAAGCGTCGGCAAGACCCTGGACACCAACACCAA 4552 Query 145470 TGGGCCGATGTTTCATGTTGCTCATCCTCGCCGACTCGATAGGATA-TCGATTACGGTCG 145528 | || || || ||||||||| | | ||| || || |||||| | | | || || Sbjct 4553 TAGGTCGGTGGCGCATGTTGCTGTTGCGAGCCTCCTGGACAGGATAGTAGTTGAC-ATCA 4611 Query 145529 ATAATTTTATTCAAGTTTCGCACTACTACCTTTGTAATGTGCCGCAACTTTTCAAAGTCA 145588 || || || || | ||| || || || ||||| || | | | | ||| | |||||| Sbjct 4612 ATGATCTTGTTAAGGTTGCGGACAACGACCTTGGTGACTTCATGAAGCTTCTTAAAGTCG 4671 Query 145589 AACCGAGCC-TCGTCAACGACCACACAGCTATTGACGGCGATCGACGCCAAATTACAAAC 145647 | | |||| |||| | | || | | || ||| | || ||||| || || || Sbjct 4672 TAGC-AGCCTTCGTTGTAGTCGACGTAAGCAGGGAGGGCCAAAGAGGCCAAGTTGCACAC 4730 Query 145648 TGCCGTCTCCTCGGCGTCGCTGTATTGTACGATCTCGGCGCACAAATTGCTACATTTGAT 145707 || ||| || | | | | ||| | | |||||||| ||| | ||| | ||| Sbjct 4731 GGCAACCTCATCTGGGGCACAGTACTCGATGATCTCGGTGCAGAGGTTGGAGCTGCGGAT 4790 Query 145708 GGTTCCCAGATTTTGCTGATTACTTTTCCTGTTGCACGCGTCCTTGTAGAGCATGTACGG 145767 ||||||||| || | || || || || | |||||| ||||||||||||||| | || Sbjct 4791 GGTTCCCAGGTTCTTTTGGTTGCTCTTGCGGTTGCAGTGATCCTTGTAGAGCATGAAGGG 4850 Query 145768 TCCGCCAGTCTCCACCTGCGTCTCCACGATAAAACGGTGCAAGTCCTGCGCACGCACCTG 145827 |||||||| ||| | |||| ||| || || | ||| || || | || Sbjct 4851 GTTACCAGTCTCGGTCTGGGCTTCCAGGATGGAATACCACAGCTTCTGAGCGCGGA--TG 4908 Query 145828 CTGCTGGTA--GCGGCCCTCTTCTTCGTATTTCCTGTAGAGCTCCTCAAACGCGGAACCG 145885 | || | || ||||| | ||||| ||| || | |||| ||| | || Sbjct 4909 GTCTTGCGACCACGTCCCTCCTTCTCGTACTTCTCATACAAGGCCTCGAACTCCTCGCCA 4968 Query 145886 TAGCAATCGGACAGGCCGGGACACTTGTTGGGACACATCAGCGACCATACGCCGTTGGCG 145945 ||||| || | ||||| ||||| | |||||| ||||| |||| ||| | ||| Sbjct 4969 TAGCAGTCAGCAAGGCCAGGACATTCGTTGGGGCACATGAGCGTCCAGTCCAAGTTCTTC 5028 Query 145946 TTGACGCGCTCCATAAACAAATCTGGCACCCACAGCGCGTACATCAAGTCGCGCGCTTTG 146005 | || |||| ||| || | || || | ||| || || | ||||||||| || | Sbjct 5029 TCAACACGCTTCATGAAGAGGTCGGGAATCCAGAGAGCAAGGAACAAGTCGCGAGC---G 5085 Query 146006 CAATCCTCAGC--ACCCATGTTTC--GCTTCAAATTAAGCACACT-ATAGATGTCCGCGT 146060 | |||| | || || ||| || | || ||| | ||| | ||| ||| |||| Sbjct 5086 CGGACCTCTTCCTTGCCGTGGTTCTTGC-GGAGATCAAGGA-ACTCAAAGACGTCGGCGT 5143 Query 146061 GCCACGGTTCAATATAGACGGCGAGGGCTCCTTTTCGTTTG---CCACCCTGGTCCACGT 146117 |||| || || | |||| ||| | || || || ||| |||||||| || || | Sbjct 5144 GCCAGGGCTCGAGGTAGATGGCAAAAGCACCAGGACGCTTGTTACCACCCTGATCGACAT 5203 Query 146118 GACGTACCATGTTGTTAAAGACGCGCACCATGGGCTCGACGCCGCTGGCTACGCCGTTCG 146177 | | ||||||| || || || | |||||| | ||| ||| ||||| | Sbjct 5204 ATCTGGCAGTGTTGTTGAACACTCGAAGCATGGGAATAATACCGTTGGAGGTACCGTTGG 5263 Query 146178 T---AG-AGTTTATTCTGGTGCCGCGGGAGCGCACGCAATGAACATTCACGCCGAGACCG 146233 | || | | || | |||| || || | || || || |||| ||||| ||| Sbjct 5264 TGCCAGCAATGTA----AGAGCCGGTGGCACGGATGCGGTGGACGTTCAAGCCGATACCA 5319 Query 146234 CC-GCCGTACTTGGATATAGCGGCGCA-GTCGCCGAGCGTCTCGTAGATGCCGTCAATGC 146291 || ||| | ||||| || ||| || ||| | || || || ||||| || || || | Sbjct 5320 CCAGCCAT-TTTGGAAATCATGGCACATGTCTTC-AGGGTGTCATAGATACCCTCGATAC 5377 Query 146292 TATCG--CTTCGAATGCCGAGCAGAAAGCACGAGCACATCTGCGCCATCGGCGTCCCCGC 146349 ||||| |||| ||| ||| || ||||| ||| ||| ||| ||| ||| || || || Sbjct 5378 TATCGTCCTTC--ATGTCGACCAAGAAGCATGAGGACAGCTGGGCCTGCGGGGTACCGGC 5435 Query 146350 CGAGAACA 146357 ||||| Sbjct 5436 GTTGAACA 5443 >seq1667 Length=31153 Score = 123 bits (136), Expect = 2e-23 Identities = 164/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 131007 GCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCT 131066 |||||| || | ||| ||||| || || | || |||||| || |||||||| ||||| Sbjct 23468 GCCACCACGAAGACGAAGCACCAAGTGCAGCGTGCTCTCCTTCTGGATGTTGTAGTCGCT 23409 Query 131067 CATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126 || |||||| ||| || |||||||| || || |||| || ||||||||||| ||||| Sbjct 23408 CAAGGTGCGACCGTCTTCCAGCTGCTTACCAGCAAAGATCAAGCGCTGCTGGTCAGGAGG 23349 Query 131127 GATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGAT 131186 || || || ||||| || || ||||| | || | || |||| || || | Sbjct 23348 AATGCCCTCCTTGTCCTGAATCTTGGACTTGACGTTGTCGATGGTGTCGGAAGATTCCAC 23289 Query 131187 GTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 |||| ||| | || || || || ||||| || |||||||||||||| Sbjct 23288 CTCGAGGGTGATTGTCTTGCCTGTGAGAGTCTTGACGAAAATCTGCAT 23241 Score = 116 bits (128), Expect = 3e-21 Identities = 156/217 (72%), Gaps = 0/217 (0%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| || | ||| || || | || | || |||||||| ||||||||||| ||| Sbjct 23011 CCACCACGGAGACGAAGGACAAGGTGGAGAGTGGACTCCTTCTGAATGTTGTAGTCGGAG 22952 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | ||| || ||||| ||||||||||| ||| |||| || ||||||||||| |||||| Sbjct 22951 AGGGTTCGGCCATCCTCAAGCTGCTTGCCGGCGAAGATCAAGCGCTGCTGGTCAGGAGGG 22892 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || || || ||||| ||| || ||||| | || | ||||| | ||||| | Sbjct 22891 ATACCCTCCTTGTCCTGGATCTTGGACTTGACGTTGTCAATGGTATCAGATGACTCCACC 22832 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGA 131224 |||| ||| | ||| || ||||| || || || |||| Sbjct 22831 TCGAGGGTGATGGTCTTTCCGGTGAGGGTCTTGACGA 22795 Score = 116 bits (128), Expect = 3e-21 Identities = 164/228 (72%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| |||| ||| || || | || | || |||||||||||||||||| |||||| Sbjct 23239 CCACCACGCAGACGGAGGACAAGGTGAAGTGTGCTCTCCTTTTGAATGTTGTAGTCGCTC 23180 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | ||||| |||||| |||||||| || || |||| | ||||||||| ||||| ||| Sbjct 23179 AAAGTGCGACCGTCCTCGAGCTGCTTACCAGCAAAGATGAGACGCTGCTGATCCGGGGGG 23120 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTG-CTTGAGCTGCTCCACAGTATCGGTGGACTCGAT 131186 || || || ||||| ||| | | || ||||| | || | || || | ||||| | Sbjct 23119 ATACCCTCCTTGTC-CTGAATCTTTGACTTGACATTGTCGATGGTGTCTGATGACTCAAC 23061 Query 131187 GTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | || | ||| || ||||| | || || ||||| |||||||| Sbjct 23060 CTCCAATGTGATGGTCTTGCCGGTCAACGTCTTGACGAAGATCTGCAT 23013 Score = 109 bits (120), Expect = 5e-19 Identities = 161/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| || | || || || | || | ||| |||||||| || |||||||| ||| | Sbjct 22712 CCACCACGAAGGCGGAGAACCAGGTGGAGGGTAGACTCCTTCTGGATGTTGTAGTCGGAC 22653 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | || || ||||| || |||||||| || | || | |||||||||||| ||||| Sbjct 22652 AGAGTTCGGCCATCCTCGAGTTGCTTGCCAGCAAAAATCAGACGCTGCTGGTCAGGAGGA 22593 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || || || ||||| ||| || ||||| | || | ||||||| ||||| | Sbjct 22592 ATGCCCTCCTTGTCCTGGATCTTAGACTTGACGTTGTCGATGGTATCGGACGACTCCACC 22533 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCATG 131235 |||| ||| | ||| || ||||| || || || ||||| || |||||| Sbjct 22532 TCGAGGGTGATGGTCTTGCCGGTGAGGGTCTTGACGAAGATTTGCATG 22485 >seq1790 Length=95376 Score = 116 bits (128), Expect = 3e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| |||| ||||| || | || | ||| |||||||| || |||||||| ||| Sbjct 27668 CCACCACGCAGGCGCAGGACCAGGTGGAGGGTAGACTCCTTCTGGATGTTGTAGTCGGAG 27727 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | ||| || ||||| |||||||| || ||| |||| || |||||||||||||| || Sbjct 27728 AGGGTTCGGCCATCCTCCAGCTGCTTACCAGCGAAGATCAATCGCTGCTGGTCCGGGGGA 27787 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || || || ||||| ||| || ||||| | || | || |||| ||||| | Sbjct 27788 ATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCGATGGTGTCGGAAGACTCCACC 27847 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | ||| | || || || || || || || |||||||||||||| Sbjct 27848 TCAAGGGTGATCGTCTTCCCCGTGAGGGTCTTGACGAAAATCTGCAT 27894 >seq2135 Length=79206 Score = 98.7 bits (108), Expect = 9e-16 Identities = 131/182 (72%), Gaps = 0/182 (0%) Strand=Plus/Minus Query 131045 CCTTTTGAATGTTGTAATCGCTCATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGA 131104 |||| || |||||||| ||| | |||||| ||||| ||||||||||| || ||| Sbjct 76472 CCTTCTGGATGTTGTAGTCGGAAAGGGTGCGGCCATCCTCGAGCTGCTTGCCAGCAAAGA 76413 Query 131105 TTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCT 131164 | || |||||||||||||| || || || || ||||| ||| || ||||| | | Sbjct 76412 TCAATCGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGT 76353 Query 131165 CCACAGTATCGGTGGACTCGATGTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGA 131224 | | || |||| |||||||| || | ||| | ||| || || || || || || |||| Sbjct 76352 CGATCGTGTCGGAGGACTCGACCTCAAGGGTGATGGTCTTGCCCGTCAGGGTCTTCACGA 76293 Query 131225 AA 131226 || Sbjct 76292 AA 76291 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 471998905123200