Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichoderma_20pleuroti_20[genbank_20GCA_5F001721665.1_202016-09-08]
2,355 sequences; 38,137,656 total letters
Query= NC_008168.1
Length=104710
Score E
Sequences producing significant alignments: (Bits) Value
seq2224 140 2e-28
seq1667 116 2e-21
seq1669 100 2e-16
>seq2224
Length=11470
Score = 140 bits (154), Expect = 2e-28
Identities = 88/95 (93%), Gaps = 5/95 (5%)
Strand=Plus/Plus
Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956
|||||||||||||||||||||||||||||||||||||||||||| || ||||||||
Sbjct 6541 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGT 6600
Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991
|||||| ||||||||||||||||||||||||||||
Sbjct 6601 TAATCCATTCATGCGCGTCACTAATTAGATGACGA 6635
>seq1667
Length=31153
Score = 116 bits (128), Expect = 2e-21
Identities = 163/229 (71%), Gaps = 0/229 (0%)
Strand=Plus/Minus
Query 38089 TACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAG 38148
||||||| | || ||| | || | ||||| ||||||||||||||||| ||||| ||
Sbjct 23241 TACCACCACGCAGACGGAGGACAAGGTGAAGTGTGCTCTCCTTTTGAATGTTGTAGTCGC 23182
Query 38149 ACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGG 38208
|||| || |||| || | || || || ||||| || || || || ||||| | ||
Sbjct 23181 TCAAAGTGCGACCGTCCTCGAGCTGCTTACCAGCAAAGATGAGACGCTGCTGATCCGGGG 23122
Query 38209 GGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAA 38268
||| || || |||||| ||| ||| ||| ||||| | || || ||| ||||
Sbjct 23121 GGATACCCTCCTTGTCCTGAATCTTTGACTTGACATTGTCGATGGTGTCTGATGACTCAA 23062
Query 38269 CTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317
| || ||||| || || || || ||||| || || ||||| ||||||||
Sbjct 23061 CCTCCAATGTGATGGTCTTGCCGGTCAACGTCTTGACGAAGATCTGCAT 23013
>seq1669
Length=31036
Score = 100 bits (110), Expect = 2e-16
Identities = 198/293 (68%), Gaps = 0/293 (0%)
Strand=Plus/Minus
Query 6195 GACGCGTTCTACCGCTACAAAATGCCGCGCATCTGCGCCAAGGTCGAGGGTAAGGGAAAC 6254
|| || || ||||||||||| ||| |||| || ||||| | || || ||||| |||
Sbjct 5667 GATGCCTTTTACCGCTACAAGATGGAGCGCCTCCAGACCAAGATTGAAGGCAAGGGTAAC 5608
Query 6255 GGTATTAAAACCGTCATTGTCAACATGCCTGAAGTCGCTAAGGCGCTCGGACGCCCTGCC 6314
||||| || ||||| | |||||| || | ||||| || | || | ||||| | |
Sbjct 5607 GGTATCAAGACCGTTGTCGTCAACTTGTCCAGCGTCGCCCAGTCTCTTGCCCGCCCCGGC 5548
Query 6315 ACCTACCCGACGAAATATTTCGGGTGCGAACTTGGCGCTCAGACGCAGTTTGATCACAAA 6374
|||| | || || || || | ||| || || |||||||| | | || | |||
Sbjct 5547 TCCTATGTCATCAAGTACTTTGGTTTCGAGCTGGGAGCTCAGACCAACATCGACCCCAAG 5488
Query 6375 AACGAGCGCTTCATCGTTAACGGATCGCATAACTCTGCCAAGCTGCAGGACTTACTTGAC 6434
|||| || | ||| | ||||| | || | | || |||||||||||| || ||
Sbjct 5487 GACGACCGTTGGATCATCAACGGCGCCCACGATGCCGCAAAGCTGCAGGACCACCTCGAT 5428
Query 6435 GGCTTTATTCGCAAGTTTGTGCTGTGTCGGGAATGCGATAACCCGGAGACCGA 6487
||||| || ||||||||| || || | ||| | ||||| ||||||||
Sbjct 5427 GGCTTCATCAACAAGTTTGTTCTCTGCAAAAAGTGCAAGAACCCCGAGACCGA 5375
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 334937586492005
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |