Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20pleuroti_20[genbank_20GCA_5F001721665.1_202016-09-08] 2,355 sequences; 38,137,656 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq535 187 3e-42 >seq535 Length=62126 Score = 187 bits (206), Expect = 3e-42 Identities = 488/733 (67%), Gaps = 25/733 (3%) Strand=Plus/Plus Query 92927 TCAGCTACAAATTCTATGTACTGAGACATCAAATCACAATTCATTCCTAG-AAGACGTAC 92985 || || ||||| || |||||||| ||||| | ||||| || || ||| || | Sbjct 14926 TCGGCAACAAACTCAATGTACTGCTTCATCAGGCTGGAGTTCATGCCAAGCAAGGCGCAG 14985 Query 92986 AGGTAGAGCGTCGGTCAAGAAATCTTTCTCGATTACAACGGCTTCTTTCAAGATTTCT-- 93043 || ||||| ||||||||||| || | ||| ||| || || || | | ||| || Sbjct 14986 GGG-AGAGCCTCGGTCAAGAACTCCTGCTCAATTCGGACAGCGTCGGTGATGATGTCACG 15044 Query 93044 -ATTACTCTACTATTTGGT--GGTTTTTGTACGACATAATTGTACATTAAGCACGCAAAG 93100 || | ||| || ||| |||| ||| | | | || || | ||| |||||| Sbjct 15045 GATCA-TCTCCTTGCTGGCACGGTTCTTG----AGGTGAGAGTGCAGCAGGCAGGCAAAG 15099 Query 93101 TCGGTATGTAAACCTTCGTCTCGTGATATCAACTCATTGCTGAATGTTAAACCTGGTAAC 93160 || || || | ||| || || || || || | ||| ||| || || | ||| || | Sbjct 15100 TCAGTGTGCAGACCCTCATCACGAGAGATGAGCTCGTTGGAAAAGGTCAGACCAGGCATG 15159 Query 93161 AGTCCTCGTTTCTTGAGCCAAAATATTGAAGCAAAACTACCAGaaaaaaaTATACCTTCC 93220 || ||||| ||||||| ||| || || || ||||| ||| || || || || || Sbjct 15160 AGACCTCGCTTCTTGACCCAGAAGATGGAGGCAAAGGCACCGCTGAAGAAGATGCCCTCG 15219 Query 93221 ACGGCTGCAAATGCCACAATACGTTCGGCAAAATTTGCGGAATTACTG--CTGA-TCCAT 93277 ||||| ||||| || || | || | |||||| | || || || |||| |||| Sbjct 15220 ACGGCGGCAAAGGCAACCAGGCGCTGGGCAAAG---GAAGAGTTCTTGTCCTGAATCCAC 15276 Query 93278 TTTAAAGCCCAATCGGCTTTTTTCTTAATACAAGGTAGTGTTTCGATAGCGTTAAATAGG 93337 || | ||||| ||||| ||||| ||| ||||| | || || || ||||| || ||| Sbjct 15277 TTGATGGCCCAGTCGGCCTTTTTGCGAATGCAAGGAATGGTCTCAATGGCGTTGAAGAGG 15336 Query 93338 TAATCTCGCTCGTCCGAATCTCGT--ATGTATGTATCGATTAACAGAGAATACATTTCAG 93395 || |||| | | |||| | ||||| || ||||| | ||| || || | || | Sbjct 15337 TAGCTGCGCTGG--CTGTTCTCCTTGATGTAGGTGTCGATGAGCAGGGAGTAGGTCTCGG 15394 Query 93396 AATGGACATTCTCCATTGCAATTTGGAATCCGTAGAAACATCTAGCTTCCGTGATCTGCA 93455 | |||| |||||||| || ||||| |||||||| |||| ||| || | |||||| | Sbjct 15395 AGTGGATGTTCTCCATCATGATCTGGAAGCCGTAGAAGCATCGAGCCTCGGGGATCTGGA 15454 Query 93456 CTTCTTGAGAAAATCTCTCTACGAGATTTTCATTGACTATACCATCGGATGCTGCaaaaa 93515 | || || | ||| || || || || ||||| || ||||| || || ||||| | Sbjct 15455 CCTCGCCGCTGAAGCGCTCGACCAGGTTCTCGTTGACAATGCCATCAGAGGCGGCAAAGA 15514 Query 93516 aaGCCAATATATGCTTTATAAAATGTTTCTCATCATCTTTAAGC---TTATCCCAATCGG 93572 | |||| || || || || | ||||| ||||| || || || | ||| ||| Sbjct 15515 AGGCCAGGATGTGAGAGATGAAGTACTTCTCGTCATCGTTCAGGCGGTTGTTCCAGTCGT 15574 Query 93573 ATAGATCTTTTGAAAGATCGACTTCTTCGACAGTCCAAAACGATGCTTCTGCTTTTTTGT 93632 ||||| || || ||||| | |||||| | ||||| || || || || || ||||||| Sbjct 15575 GCAGATCCTTGGACAGATCAATCTCTTCGGCGGTCCAGAAGGAGGCCTCGGCCTTTTTGT 15634 Query 93633 ACATATCCCATAT 93645 |||| | ||| || Sbjct 15635 ACATTTGCCAAAT 15647 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556844407410200